EWM30204.1, cds438 (CDS) Nannochloropsis gaditana

Overview
NameEWM30204.1
Unique Namecds438
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1083460..1084233 +

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Properties
Property NameValue
Protein idEWM30204.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100003g44.1721.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1083460..1084233 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM30204.1 vs. NCBI_GenBank
Match: gi|585112863|gb|EWM30204.1| (hypothetical protein Naga_100003g44 [Nannochloropsis gaditana])

HSP 1 Score: 537.339 bits (1383), Expect = 0.000e+0
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 0 
Query:    1 MVLAPSLLYLSRAPFTLSTLVALTYLFFPRFGMWQIDSLRYSSMTISPWDLAISLEMDVGVSMFNPNHINSRLHNATLDIYRVQPTHISGAHQAPTYGTSFGVARTHFHEVPRRDTFYLDSHVSIVRLPFAVLCSFMRELLLNKGVVKMRGVGQAWISAAAQDVTVLVDCFQHVQPFPHPGRIVHTACNFKLANGGGMNGSLLDLLQLQLGTEWGEIRGRKKQQGHKARKSVRAKEEICDATMIRGVIAEVQACEGL 257
            MVLAPSLLYLSRAPFTLSTLVALTYLFFPRFGMWQIDSLRYSSMTISPWDLAISLEMDVGVSMFNPNHINSRLHNATLDIYRVQPTHISGAHQAPTYGTSFGVARTHFHEVPRRDTFYLDSHVSIVRLPFAVLCSFMRELLLNKGVVKMRGVGQAWISAAAQDVTVLVDCFQHVQPFPHPGRIVHTACNFKLANGGGMNGSLLDLLQLQLGTEWGEIRGRKKQQGHKARKSVRAKEEICDATMIRGVIAEVQACEGL
Sbjct:    1 MVLAPSLLYLSRAPFTLSTLVALTYLFFPRFGMWQIDSLRYSSMTISPWDLAISLEMDVGVSMFNPNHINSRLHNATLDIYRVQPTHISGAHQAPTYGTSFGVARTHFHEVPRRDTFYLDSHVSIVRLPFAVLCSFMRELLLNKGVVKMRGVGQAWISAAAQDVTVLVDCFQHVQPFPHPGRIVHTACNFKLANGGGMNGSLLDLLQLQLGTEWGEIRGRKKQQGHKARKSVRAKEEICDATMIRGVIAEVQACEGL 257
[Close]
BLAST of EWM30204.1 vs. NCBI_GenBank
Match: gi|298706725|emb|CBJ29674.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 68.5514 bits (166), Expect = 1.675e-10
Identity = 38/180 (21.11%), Postives = 83/180 (46.11%), Query Frame = 0 
Query:   15 FTLSTLVALTYLFFPRFGMWQIDSLRYSSMTISPWDLAISLEMDVGVSMFNPNHINSRLHNATLDIYRVQPTHISGAHQAPTYGTSFGVARTHFHEVPRRDTFYLDSHVSIVRLPFAVLCSFMRELLLNKGVVKMRGVGQAWISAAAQDVTVLVDCFQHVQPFPHPGRIVHTACNFKLAN 194
            F  + +     + FPR   WQI  ++Y  ++++   + + +++D+G+ +FNPN++ + L    + ++        G  +AP    +F  A  +   +P R +  + + + +V LP ++     ++ + + GV+  R      +     D+ +  DC QH+Q    P +I    C +   N
Sbjct:    8 FVAAAVSVCVGVMFPRAPTWQIVDMKYRGLSMNIASIGVDMKIDMGLEVFNPNYVPATLKGIVMTMFH----EDLGGEEAPFGVVTF--AGENAARLPARGSAVVQAQMEVVSLPTSMAMGIAKD-VADGGVIVSRASAFMDVKVMGGDILIEADCVQHMQADVFPIKINEIDCKYYYKN 180
The following BLAST results are available for this feature:
BLAST of EWM30204.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585112863|gb|EWM30204.1|0.000e+0100.00hypothetical protein Naga_100003g44 [Nannochlorops... [more]
gi|298706725|emb|CBJ29674.1|1.675e-1021.11expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna438rna438Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications