EWM26339.1, cds4356 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26339.1 vs. NCBI_GenBank
Match: gi|585108346|gb|EWM26339.1| (SNARE associated Golgi protein [Nannochloropsis gaditana]) HSP 1 Score: 1139.79 bits (2947), Expect = 0.000e+0 Identity = 554/554 (100.00%), Postives = 554/554 (100.00%), Query Frame = 0
Query: 1 MYLSSLSFFPRCPFPRPCARLIGPRSHYRLTCSNKHPRHREMGTPSCLSAGELLNSPLPSAPSPESLTSRDESSIGFTEDMIEMMASAAAIRPPSVNLPPRENITQENERKTDNFYDDRSSRHVCLQMNDTVSGAGEKEGNQSVGPTALPSSRQGFCRRAYKTLRRLRSMLLVLSVVLICAVAGSYLCVRYRDQVLEGSEWIRAHAPQSAVYYALITALWIILCLPSTIIELLGGAIFSYPVALLTLTVGKQLGCMLAFLLAKVFASPTLRDALGHSSHSPTRGKEPNESVVENNDQEGGDAPSLRHSRFPAAARPSKPMSKRKRTIRAMFIAMECHPWKITFLLRFLPIPISIKNYGMAFLPCPTHVFFLCTFVASIPFTLIWVNLGESTKNLLEALNGGGAAMKRHGIFAQELGLLVVGLALLMVLIFILRRYTQRYAAVIEAEEADGVGTGAERAGDGKGEEDSLTRADEGGSKRAEDDDRRGVDPKKRGHGDSNERSQAKGAGEEGHPTPGRICWEEMERDTEGAEEEEKEEKPSQEEPEGSPSSVASVA 554
MYLSSLSFFPRCPFPRPCARLIGPRSHYRLTCSNKHPRHREMGTPSCLSAGELLNSPLPSAPSPESLTSRDESSIGFTEDMIEMMASAAAIRPPSVNLPPRENITQENERKTDNFYDDRSSRHVCLQMNDTVSGAGEKEGNQSVGPTALPSSRQGFCRRAYKTLRRLRSMLLVLSVVLICAVAGSYLCVRYRDQVLEGSEWIRAHAPQSAVYYALITALWIILCLPSTIIELLGGAIFSYPVALLTLTVGKQLGCMLAFLLAKVFASPTLRDALGHSSHSPTRGKEPNESVVENNDQEGGDAPSLRHSRFPAAARPSKPMSKRKRTIRAMFIAMECHPWKITFLLRFLPIPISIKNYGMAFLPCPTHVFFLCTFVASIPFTLIWVNLGESTKNLLEALNGGGAAMKRHGIFAQELGLLVVGLALLMVLIFILRRYTQRYAAVIEAEEADGVGTGAERAGDGKGEEDSLTRADEGGSKRAEDDDRRGVDPKKRGHGDSNERSQAKGAGEEGHPTPGRICWEEMERDTEGAEEEEKEEKPSQEEPEGSPSSVASVA
Sbjct: 1 MYLSSLSFFPRCPFPRPCARLIGPRSHYRLTCSNKHPRHREMGTPSCLSAGELLNSPLPSAPSPESLTSRDESSIGFTEDMIEMMASAAAIRPPSVNLPPRENITQENERKTDNFYDDRSSRHVCLQMNDTVSGAGEKEGNQSVGPTALPSSRQGFCRRAYKTLRRLRSMLLVLSVVLICAVAGSYLCVRYRDQVLEGSEWIRAHAPQSAVYYALITALWIILCLPSTIIELLGGAIFSYPVALLTLTVGKQLGCMLAFLLAKVFASPTLRDALGHSSHSPTRGKEPNESVVENNDQEGGDAPSLRHSRFPAAARPSKPMSKRKRTIRAMFIAMECHPWKITFLLRFLPIPISIKNYGMAFLPCPTHVFFLCTFVASIPFTLIWVNLGESTKNLLEALNGGGAAMKRHGIFAQELGLLVVGLALLMVLIFILRRYTQRYAAVIEAEEADGVGTGAERAGDGKGEEDSLTRADEGGSKRAEDDDRRGVDPKKRGHGDSNERSQAKGAGEEGHPTPGRICWEEMERDTEGAEEEEKEEKPSQEEPEGSPSSVASVA 554
BLAST of EWM26339.1 vs. NCBI_GenBank
Match: gi|585100983|gb|EWM20987.1| (SNARE associated Golgi protein [Nannochloropsis gaditana]) HSP 1 Score: 156.377 bits (394), Expect = 5.515e-39 Identity = 86/208 (41.35%), Postives = 116/208 (55.77%), Query Frame = 0
Query: 191 YRDQVLEGSEWIRAHAPQSAVYYALITALWIILCLPSTIIELLGGAIFSYPVALLTLTVGKQLGCMLAFLLAKVFASPTLRDALGHSSHSPTRGKEPNESVVENNDQEGGDAPSLRHSRFPAAARPSKPMSKRKRTIRAMFIAMECHPWKITFLLRFLPIPISIKNYGMAFLPCPTHVFFLCTFVASIPFTLIWVNLGESTKNLLEAL 398
+ ++ + W++A AP SA+YYA T LW++LCLPST+IEL GG IF PV LLT+ V K GC LAFLL + A+ +LR L P P + A+F+AME HPWK+T LLRF+ +PI++KNYGMA LPCP VF LCT AS+P+TL+W + G S+++L + L
Sbjct: 112 FHSRLTDLMAWVQARAPLSALYYAAFTVLWVLLCLPSTLIELCGGFIFGLPVTLLTVGVAKPFGCCLAFLLGRCVAADSLRQGLLLPPVRPPAPSAPPSAPARAR---------------------------------ALFLAMERHPWKVTLLLRFMYLPIAVKNYGMAALPCPFPVFALCTLAASLPYTLLWAHAGASSRSLYDVL 286
BLAST of EWM26339.1 vs. NCBI_GenBank
Match: gi|970642700|gb|KUF84275.1| (ABC transporter G family member 35 [Phytophthora nicotianae]) HSP 1 Score: 97.0561 bits (240), Expect = 2.842e-17 Identity = 80/294 (27.21%), Postives = 125/294 (42.52%), Query Frame = 0
Query: 164 LRRLRSMLLVLSVVLICAVAGSYLCVRYR-DQVLEGSEWIRAHAPQSAVYYALITALWIILCLPSTIIELLGGAIFSYPVALLTLTVGKQLGCMLAFLLAKVFASPTLRDALGHSSHSPTRGKEPNESVVENNDQEGGDAPSLRHSRFPAAARPSKPMSKRKRTIRAMFIAMECHPWKITFLLRFLPIPISIKNYGMAFLPCPTHVFFLCTFVASIPFTLIWVNLGESTKNLLEALNGGGAAMKRHGIFAQELGLLVVGLALLMVLIFILRRYTQRYAAVIEAEEADGVGTGAE 456
L +L+ LLVL +V + G L R D +W++ H A Y +++LC PST ELL G IF + LL T GK +G +L++++ + + + H +G + SL RKR I + FL R PI++KNYG++ L V+F + +PF+ IWV G + +N L AA RH + E+ LL+VG ++L+F++ YT++Y + EE D T A+
Sbjct: 24 LMQLKRALLVLGIVALGLTVGLLLFRFVRSDDFDLVVQWLQTHETLGAALYVCSFTCFVVLCFPSTAFELLAGYIFGLWLGLLLATTGKLVGSVLSYVIGRYLCRRRVHAYMAQG-HPALQGFQ-----------------SL----------------LRKRQI------------LVVFLTRVAFFPIAVKNYGLSVLDVRFPVYFAAALLTGLPFSFIWVYSGHAVENFTALLASPTAA--RH---STEMILLLVGAGSALLLLFVVGFYTRKYVLDLAEEEKDAGTTVAD 266
BLAST of EWM26339.1 vs. NCBI_GenBank
Match: gi|970636211|gb|KUF80926.1| (prenyltransferase alpha subunit repeat-containing protein 1 protein [Phytophthora nicotianae]) HSP 1 Score: 92.8189 bits (229), Expect = 4.663e-16 Identity = 78/294 (26.53%), Postives = 123/294 (41.84%), Query Frame = 0
Query: 164 LRRLRSMLLVLSVVLICAVAGSYLCVRYR-DQVLEGSEWIRAHAPQSAVYYALITALWIILCLPSTIIELLGGAIFSYPVALLTLTVGKQLGCMLAFLLAKVFASPTLRDALGHSSHSPTRGKEPNESVVENNDQEGGDAPSLRHSRFPAAARPSKPMSKRKRTIRAMFIAMECHPWKITFLLRFLPIPISIKNYGMAFLPCPTHVFFLCTFVASIPFTLIWVNLGESTKNLLEALNGGGAAMKRHGIFAQELGLLVVGLALLMVLIFILRRYTQRYAAVIEAEEADGVGTGAE 456
L +L+ LLVL +V + G L R D +W++ H A Y +++LC PST ELL G IF + LL T GK +G +L++++ + + + H +G + RKR I + FL R PI++KNYG++ L V+F + +PF+ IWV G + +N L AA RH + E+ LL+VG ++L+F++ YT++Y + EE D T A+
Sbjct: 24 LMQLKRALLVLGIVALGLTVGLLLFRFVRSDDFDLVVQWLQTHETLGAALYVCSFTCFVVLCFPSTAFELLAGYIFGLWLGLLLATTGKLVGSVLSYVIGRYLCRRRVHAYMAQG-HPALQGFQS---------------------------------LLRKRQIL------------VVFLTRVAFFPIAVKNYGLSVLDVRFPVYFAAALLTGLPFSFIWVYSGHAVENFTALLASPTAA--RH---STEMILLLVGAGSALLLLFVVGFYTRKYVLDLAEEEKDAGTTVAD 266
BLAST of EWM26339.1 vs. NCBI_GenBank
Match: gi|675207319|ref|XP_008912544.1| (hypothetical protein PPTG_16793 [Phytophthora parasitica INRA-310] >gi|566013846|gb|ETI36757.1| hypothetical protein F443_17187 [Phytophthora parasitica P1569] >gi|567951248|gb|ETK76951.1| hypothetical protein L915_16727 [Phytophthora parasitica] >gi|567979907|gb|ETL30379.1| hypothetical protein L916_16636 [Phytophthora parasitica] >gi|568009408|gb|ETL83611.1| hypothetical protein L917_16456 [Phytophthora parasitica] >gi|568039318|gb|ETM36814.1| hypothetical protein L914_16562 [Phytophthora parasitica] >gi|568087287|gb|ETN02161.1| hypothetical protein PPTG_16793 [Phytophthora parasitica INRA-310] >gi|570317508|gb|ETO65456.1| hypothetical protein F444_17228 [Phytophthora parasitica P1976] >gi|570941298|gb|ETP06555.1| hypothetical protein F441_17060 [Phytophthora parasitica CJ01A1] >gi|570971530|gb|ETP34649.1| hypothetical protein F442_17061 [Phytophthora parasitica P10297] >gi|970654070|gb|KUF92436.1| hypothetical protein AM588_10004053 [Phytophthora nicotianae]) HSP 1 Score: 86.2705 bits (212), Expect = 4.098e-15 Identity = 80/295 (27.12%), Postives = 125/295 (42.37%), Query Frame = 0
Query: 164 LRRLRSMLLVLSVVLICAVAGSYLC--VRYRDQVLEGSEWIRAHAPQSAVYYALITALWIILCLPSTIIELLGGAIFSYPVALLTLTVGKQLGCMLAFLLAKVFASPTLRDALGHSSHSPTRGKEPNESVVENNDQEGGDAPSLRHSRFPAAARPSKPMSKRKRTIRAMFIAMECHPWKITFLLRFLPIPISIKNYGMAFLPCPTHVFFLCTFVASIPFTLIWVNLGESTKNLLEALNGGGAAMKRHGIFAQELGLLVVGLALLMVLIFILRRYTQRYAAVIEAEEADGVGTGAE 456
L +L+ LLVL +V + G L VR D L +W++ H A Y +++LC PST ELL G IF + LL T GK +G +L++++ + + + H +G + RKR I + FL R PI++KNYG++ L V+F + +PF+ IWV G + +N L AA RH + E+ LL+VG ++L+F++ YT++Y + EE D T A+
Sbjct: 24 LMQLKRALLVLGIVALGLTVGLLLFRFVRSDDFDLV-VQWLQTHETLGAALYVCSFTCFVVLCFPSTAFELLAGYIFGLWLGLLLATTGKLVGSVLSYVIGRYLCRRRVHAYMAQG-HPALQGFQS---------------------------------LLRKRQIL------------VVFLTRVAFFPIAVKNYGLSVLDVRFPVYFAAALLTGLPFSFIWVYSGHAVENFTALLASPTAA--RH---STEMILLLVGAGSALLLLFVVGFYTRKYVLDLAEEEKDAGTTVAD 266
BLAST of EWM26339.1 vs. NCBI_GenBank
Match: gi|301101692|ref|XP_002899934.1| (ATP-binding Cassette (ABC) superfamily [Phytophthora infestans T30-4] >gi|262102509|gb|EEY60561.1| ATP-binding Cassette (ABC) superfamily [Phytophthora infestans T30-4]) HSP 1 Score: 86.2705 bits (212), Expect = 4.137e-15 Identity = 79/295 (26.78%), Postives = 123/295 (41.69%), Query Frame = 0
Query: 164 LRRLRSMLLVLSVVLICAVAGSYLC--VRYRDQVLEGSEWIRAHAPQSAVYYALITALWIILCLPSTIIELLGGAIFSYPVALLTLTVGKQLGCMLAFLLAKVFASPTLRDALGHSSHSPTRGKEPNESVVENNDQEGGDAPSLRHSRFPAAARPSKPMSKRKRTIRAMFIAMECHPWKITFLLRFLPIPISIKNYGMAFLPCPTHVFFLCTFVASIPFTLIWVNLGESTKNLLEALNGGGAAMKRHGIFAQELGLLVVGLALLMVLIFILRRYTQRYAAVIEAEEADGVGTGAE 456
L +L+ LLVL + + G L VR D L W++ H A Y +++LC PST ELL G IF + LL T GK +G +L++++ + + + H +G + RKR I + FL R PI+IKNYG++ L V+F + +PF+ IWV G + +N L A+ RH + E+ LL+VG ++L+F++ YT++Y + EE D T A+
Sbjct: 24 LMQLKRALLVLGAIALGLTVGLLLFRFVRSDDFDLV-VHWLQTHETIGAALYVCSFTCFVVLCFPSTAFELLAGYIFGLWLGLLLATTGKLVGSVLSYVIGRYLCRRRVHAYMAQG-HPALQGFQS---------------------------------LLRKRQIL------------VVFLTRVAFFPIAIKNYGLSVLDVRFPVYFAAALLTGLPFSFIWVYSGHAVENFTALLASPAAS--RH---STEMVLLLVGAGSALLLLFVVGLYTRKYVLDLAEEEKDADTTAAD 266
BLAST of EWM26339.1 vs. NCBI_GenBank
Match: gi|953502243|emb|CEG36628.1| (atp-binding cassette superfamily [Plasmopara halstedii]) HSP 1 Score: 84.3445 bits (207), Expect = 2.007e-14 Identity = 73/272 (26.84%), Postives = 117/272 (43.01%), Query Frame = 0
Query: 180 CAVAGSYLC--VRYRDQVLEGSEWIRAHAPQSAVYYALITALWIILCLPSTIIELLGGAIFSYPVALLTLTVGKQLGCMLAFLLAKVFASPTLRDALGHSSHSPTRGKEPNESVVENNDQEGGDAPSLRHSRFPAAARPSKPMSKRKRTIRAMFIAMECHPWKITFLLRFLPIPISIKNYGMAFLPCPTHVFFLCTFVASIPFTLIWVNLGESTKNLLEALNGGGAAMKRHGIFAQELGLLVVGLALLMVLIFILRRYTQRYAAVIEAEEAD 449
C AG + VR D L +W++ H A Y +++LC PST+ ELL G IF + LL T GK LG +L++++ R H HS P A + + + ++++ + I FL R PI+IKNYG++ L V+F + +PF+ IWV G + +N+ L A+ RH + E LL+VG ++L+F++ Y+++Y + EE D
Sbjct: 46 CVTAGLIVIRFVRSNDFTLV-VQWLQVHEALGAALYVCSFTCFVVLCFPSTVFELLAGYIFGLWLGLLLATTGKLLGSVLSYVIG--------RYMCRHRVHSYMARGHP-------------------------ALQGFQSLLRKRQIL-------------IVFLTRVAFFPIAIKNYGLSVLDVRFSVYFAAALLTGLPFSFIWVYSGHAVENVAALLVSPTAS--RH---STEGILLLVGAGSALLLLFMVGYYSRKYVLELAKEEQD 265
BLAST of EWM26339.1 vs. NCBI_GenBank
Match: gi|1173947608|gb|OQR95846.1| (ATP-binding Cassette (ABC) superfamily [Achlya hypogyna]) HSP 1 Score: 78.1814 bits (191), Expect = 1.959e-12 Identity = 72/259 (27.80%), Postives = 102/259 (39.38%), Query Frame = 0
Query: 195 VLEGSEWIRAHAPQSAVYYALITALWIILCLPSTIIELLGGAIFSYPVALLTLTVGKQLGCMLAFLLAKVFASPTLRDALGHSSHSPTRGKEPNESVVENNDQEGGDAPSLRHSRFPAAARPSKPMSKRKRTIRAMFIAMECHPWKITFLLRFLPIPISIKNYGMAFLPCPTHVFFLCTFVASIPFTLIWVNLGESTKNLLEALNGGGAAMKRHGIFAQELGLLVV----GLALLMVLIFILRRYTQRYAAVIEAEEAD 449
V + EW+RAH V Y + I+LCLP+T+ EL+ G +F + V K G LAF L + L H+R P+ + + +A WKI L R +PI+IKNYG++ LP P +FF T + PF I LG S + L+G H + GLL V GLALL ++ + R+Y + A +AE D
Sbjct: 29 VADSVEWLRAHQLMGGVLYTVGFTASIVLCLPATLFELIAGYVFGFWGGWAISIVAKTAGSCLAFCLGRY----------------------------------------LLHARVLRLLDSGAPLFRA----LGLLLARSDMKWKIVCLARAAWMPIAIKNYGLSVLPVPFSLFFWSTLLLGTPFGGISCYLGHSATQVSSLLSG------HHDSGYLKFGLLAVGAASGLALLCLVGYQTRKYIEELA---DAERDD 234
BLAST of EWM26339.1 vs. NCBI_GenBank
Match: gi|813170565|ref|XP_012204038.1| (hypothetical protein SPRG_09446 [Saprolegnia parasitica CBS 223.65] >gi|641531083|gb|KDO25172.1| hypothetical protein SPRG_09446 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 77.411 bits (189), Expect = 3.658e-12 Identity = 62/251 (24.70%), Postives = 99/251 (39.44%), Query Frame = 0
Query: 200 EWIRAHAPQSAVYYALITALWIILCLPSTIIELLGGAIFSYPVALLTLTVGKQLGCMLAFLLAKVFASPTLRDALGHSSHSPTRGKEPNESVVENNDQEGGDAPSLRHSRFPAAARPSKPMSKRKRTIRAMFIAMECHPWKITFLLRFLPIPISIKNYGMAFLPCPTHVFFLCTFVASIPFTLIWVNLGESTKNLLEALNGGGAAMKRHGIFAQELGLLVVGLALLMVLIFILRRYTQRYAAVIEAEEADG 450
W+RAH + Y L+ ++LCLP+T+ EL+ G +F + VGK G L+F + + F H+R PM + + ++ WKI L R +PI+IKNYG++ LP P +FF T + PF I LG S + L+G +H + L+ +G + L+ ++ T++Y + A E DG
Sbjct: 36 HWLRAHPATGGLLYTLLYTCCVVLCLPATLFELVAGYVFGFWGGWAISIVGKTAGSCLSFYIGRYF----------------------------------------LHARVLRVLESGAPMFRA----LGLLLSRPDMKWKIVCLARVAWMPIAIKNYGLSVLPVPFPMFFWSTLILGTPFGGISCYLGHSATEVSSLLSG------KHESSCFKFVLMAIGATSGLTLLCLVGYQTRKYIEELAAAERDG 236
BLAST of EWM26339.1 vs. NCBI_GenBank
Match: gi|669171049|ref|XP_008620873.1| (hypothetical protein SDRG_16441 [Saprolegnia diclina VS20] >gi|530727461|gb|EQC25703.1| hypothetical protein SDRG_16441 [Saprolegnia diclina VS20]) HSP 1 Score: 76.6406 bits (187), Expect = 6.728e-12 Identity = 64/251 (25.50%), Postives = 101/251 (40.24%), Query Frame = 0
Query: 200 EWIRAHAPQSAVYYALITALWIILCLPSTIIELLGGAIFSYPVALLTLTVGKQLGCMLAFLLAKVFASPTLRDALGHSSHSPTRGKEPNESVVENNDQEGGDAPSLRHSRFPAAARPSKPMSKRKRTIRAMFIAMECHPWKITFLLRFLPIPISIKNYGMAFLPCPTHVFFLCTFVASIPFTLIWVNLGESTKNLLEALNGGGAAMKRHGIFAQELGLLVVGLALLMVLIFILRRYTQRYAAVIEAEEADG 450
W+RAH + Y L+ ++LCLP+T+ EL+ G IF + + VGK G L+F + + F H+R PM + + ++ WKI L R +PI+IKNYG++ LP P +FF T + PF I LG S + L+G +H ++ L+ VG + L+ ++ T++Y + A E DG
Sbjct: 35 HWLRAHPATGGLLYILLYTCCVVLCLPATLFELVAGYIFGFWGGWVISIVGKTTGSCLSFYIGRYF----------------------------------------LHARVLRILESGAPMFRA----LGLLLSRPDMKWKIVCLARVAWMPIAIKNYGLSVLPVPFPMFFWSTLILGTPFGGISCYLGHSATEVSSLLSG------KHESGYFKVILMAVGATSGLTLLCLVGYQTRKYIEELAAAERDG 235 The following BLAST results are available for this feature:
BLAST of EWM26339.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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