EWM26340.1, cds4345 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26340.1 vs. NCBI_GenBank
Match: gi|585108347|gb|EWM26340.1| (ubiquitin-like protein atg12 [Nannochloropsis gaditana]) HSP 1 Score: 425.631 bits (1093), Expect = 1.110e-150 Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0
Query: 1 MEEEREEDATSSGAPAASPPSVPQAQAFDEPPSMPTLRIEREDDIPSRTSQATSTALTAATPAMCSRPGGPAGEDFSMNASTSTGGTVDLLRPSASTASSPSAPTPQSTQHSASLCPGQTAPAHAARVKLQLMAVGRAPRLTQSKFFVQASEPFRALFPVLRRLLQLKESEALFVFVNSAFAPAPEDKFGDLQKCFSRGGALIINYSLDEAWG 213
MEEEREEDATSSGAPAASPPSVPQAQAFDEPPSMPTLRIEREDDIPSRTSQATSTALTAATPAMCSRPGGPAGEDFSMNASTSTGGTVDLLRPSASTASSPSAPTPQSTQHSASLCPGQTAPAHAARVKLQLMAVGRAPRLTQSKFFVQASEPFRALFPVLRRLLQLKESEALFVFVNSAFAPAPEDKFGDLQKCFSRGGALIINYSLDEAWG
Sbjct: 1 MEEEREEDATSSGAPAASPPSVPQAQAFDEPPSMPTLRIEREDDIPSRTSQATSTALTAATPAMCSRPGGPAGEDFSMNASTSTGGTVDLLRPSASTASSPSAPTPQSTQHSASLCPGQTAPAHAARVKLQLMAVGRAPRLTQSKFFVQASEPFRALFPVLRRLLQLKESEALFVFVNSAFAPAPEDKFGDLQKCFSRGGALIINYSLDEAWG 213
BLAST of EWM26340.1 vs. NCBI_GenBank
Match: gi|325186213|emb|CCA20715.1| (hypothetical protein PITG_10650 [Albugo laibachii Nc14]) HSP 1 Score: 96.2857 bits (238), Expect = 1.754e-22 Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 0
Query: 127 RVKLQLMAVGRAPRLTQSKFFVQASEPFRALFPVLRRLLQLKESEALFVFVNSAFAPAPEDKFGDLQKCFSRGGALIINYSLDEAWG 213
+V L +AVG AP L ++KF + A++ ++ LR+ L+LK S+ALF++ N AFAPAP+ DLQKCFS L++NYSL AWG
Sbjct: 6 KVTLHFVAVGNAPILQKTKFTIDANDTLSVVYDFLRKQLKLKLSDALFIYCNRAFAPAPDQSLLDLQKCFSVDNVLVLNYSLTHAWG 92
BLAST of EWM26340.1 vs. NCBI_GenBank
Match: gi|1072230414|gb|OEU15147.1| (autophagy-related protein 12b, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 91.6633 bits (226), Expect = 1.253e-20 Identity = 38/92 (41.30%), Postives = 65/92 (70.65%), Query Frame = 0
Query: 122 PAHAARVKLQLMAVGRAPRLTQSKFFVQASEPFRALFPVLRRLLQLKESEALFVFVNSAFAPAPEDKFGDLQKCFSRGGALIINYSLDEAWG 213
P ++K+ ++VG AP L ++KF + A + F +++ LR++L+L+ ++LF+++ +AF P PE+ GDL +CFSR G L+I+YSL +AWG
Sbjct: 3 PPSVEKIKVHFVSVGSAPILKKTKFQISADQRFASVYAFLRKVLKLQVGDSLFLYLQAAFCPGPEELVGDLNECFSRRGELVIHYSLQQAWG 94
BLAST of EWM26340.1 vs. NCBI_GenBank
Match: gi|224003173|ref|XP_002291258.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220973034|gb|EED91365.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 91.2781 bits (225), Expect = 1.384e-20 Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 0
Query: 126 ARVKLQLMAVGRAPRLTQSKFFVQASEPFRALFPVLRRLLQLKESEALFVFVNSAFAPAPEDKFGDLQKCFSRGGALIINYSLDEAWG 213
+RVK+ +AVG AP L +SKF + + F LRRLL+L + +LF+++N+AF P+P+++ GDL CF G L+++YSL EAWG
Sbjct: 4 SRVKVHFVAVGSAPILKKSKFLIGEEDEFGVATAFLRRLLRLDSAPSLFLYINAAFVPSPDERIGDLYDCFGVRGELVVHYSLQEAWG 91
BLAST of EWM26340.1 vs. NCBI_GenBank
Match: gi|342321002|gb|EGU12940.1| (hypothetical protein RTG_00981 [Rhodotorula toruloides ATCC 204091]) HSP 1 Score: 92.4337 bits (228), Expect = 1.835e-20 Identity = 51/126 (40.48%), Postives = 72/126 (57.14%), Query Frame = 0
Query: 92 RPSASTASSPSAPTPQSTQHSASLCPGQTAPA----HAARVKLQLMAVGRAPRLTQSKFFVQASEPFRALFPVLRRLLQLKESEALFVFVNSAFAPAPEDKFGDLQKCFSRGGALIINYSLDEAWG 213
RPSA + SA +T+ A L P + A A +V ++ A G AP + Q+ + + AS FRA+ LR+ L K S+ LF+++NS+FAPAP+D DL KCF LI+NYS +AWG
Sbjct: 12 RPSAVRTGTSSAA---ATEQGAKLTPREALEASKLKEATKVVVRFKATGNAPIMKQNFYKITASNQFRAVIAFLRKELAWKPSDPLFLYINSSFAPAPDDTVADLYKCFGTENHLIVNYSSTQAWG 134
BLAST of EWM26340.1 vs. NCBI_GenBank
Match: gi|669147156|ref|XP_008609140.1| (hypothetical protein SDRG_05214 [Saprolegnia diclina VS20] >gi|530739378|gb|EQC37620.1| hypothetical protein SDRG_05214 [Saprolegnia diclina VS20]) HSP 1 Score: 91.6633 bits (226), Expect = 1.917e-20 Identity = 38/87 (43.68%), Postives = 59/87 (67.82%), Query Frame = 0
Query: 127 RVKLQLMAVGRAPRLTQSKFFVQASEPFRALFPVLRRLLQLKESEALFVFVNSAFAPAPEDKFGDLQKCFSRGGALIINYSLDEAWG 213
+V +Q AVG AP + +SKF V ++P ++ LR+ L+LK+ +ALFV+ N++FAP P+ K +L +CF G L++NYS +AWG
Sbjct: 21 KVTIQFTAVGGAPIMKRSKFTVNGADPLGVVYSFLRKQLRLKDEDALFVYCNASFAPTPDQKLSELHECFHVNGTLVLNYSRTQAWG 107
BLAST of EWM26340.1 vs. NCBI_GenBank
Match: gi|673045695|ref|XP_008876808.1| (hypothetical protein H310_11809 [Aphanomyces invadans] >gi|574467470|gb|ETV94493.1| hypothetical protein H310_11809 [Aphanomyces invadans]) HSP 1 Score: 91.6633 bits (226), Expect = 2.466e-20 Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 0
Query: 118 GQTAPAHAARVKLQLMAVGRAPRLTQSKFFVQASEPFRALFPVLRRLLQLKESEALFVFVNSAFAPAPEDKFGDLQKCFSRGGALIINYSLDEAWG 213
G P +V +Q AVG AP + +SKF V +P ++ LR+ L+LK+ +ALFV+ N++FAP P+ + +L +CF G L++NYS +AWG
Sbjct: 18 GNGRPGGPEKVTIQFTAVGGAPIMKRSKFTVNGGDPLSHVYIFLRKQLRLKDDDALFVYCNNSFAPTPDQRMHELYECFHINGVLVLNYSRSQAWG 113
BLAST of EWM26340.1 vs. NCBI_GenBank
Match: gi|552934870|gb|ESA18187.1| (hypothetical protein GLOINDRAFT_344710 [Rhizophagus irregularis DAOM 181602]) HSP 1 Score: 91.6633 bits (226), Expect = 2.718e-20 Identity = 44/109 (40.37%), Postives = 64/109 (58.72%), Query Frame = 0
Query: 105 TPQSTQHSASLCPGQTAPAHAARVKLQLMAVGRAPRLTQSKFFVQASEPFRALFPVLRRLLQLKESEALFVFVNSAFAPAPEDKFGDLQKCFSRGGALIINYSLDEAWG 213
TP + SL + A +V ++ A+G AP L Q+ + + AS F+A+ LRR L K S+ LF+++NSAF+PAP++ +L KCF+ G LIINY AWG
Sbjct: 16 TPSQISQNPSLALEKYKKKDAVKVIVRFRAIGNAPILKQNLYKINASNKFQAVIQFLRRELNYKASDPLFLYINSAFSPAPDEIVANLVKCFNTDGHLIINYCTSAAWG 124
BLAST of EWM26340.1 vs. NCBI_GenBank
Match: gi|595492536|gb|EXX75815.1| (hypothetical protein RirG_038670 [Rhizophagus irregularis DAOM 197198w] >gi|595492538|gb|EXX75817.1| hypothetical protein RirG_038670 [Rhizophagus irregularis DAOM 197198w]) HSP 1 Score: 91.6633 bits (226), Expect = 3.875e-20 Identity = 44/109 (40.37%), Postives = 64/109 (58.72%), Query Frame = 0
Query: 105 TPQSTQHSASLCPGQTAPAHAARVKLQLMAVGRAPRLTQSKFFVQASEPFRALFPVLRRLLQLKESEALFVFVNSAFAPAPEDKFGDLQKCFSRGGALIINYSLDEAWG 213
TP + SL + A +V ++ A+G AP L Q+ + + AS F+A+ LRR L K S+ LF+++NSAF+PAP++ +L KCF+ G LIINY AWG
Sbjct: 32 TPSQISQNPSLALEKYKKKDAVKVIVRFRAIGNAPILKQNLYKINASNKFQAVIQFLRRELNYKASDPLFLYINSAFSPAPDEIVANLVKCFNTDGHLIINYCTSAAWG 140
BLAST of EWM26340.1 vs. NCBI_GenBank
Match: gi|953497551|emb|CEG41038.1| (autophagy-related protein 12 [Plasmopara halstedii]) HSP 1 Score: 90.5077 bits (223), Expect = 4.947e-20 Identity = 39/92 (42.39%), Postives = 60/92 (65.22%), Query Frame = 0
Query: 122 PAHAARVKLQLMAVGRAPRLTQSKFFVQASEPFRALFPVLRRLLQLKESEALFVFVNSAFAPAPEDKFGDLQKCFSRGGALIINYSLDEAWG 213
P +V LQ +AVG AP + ++KF V + ++ LR+ L+LK+S++LFV+ NS+FAP+P + L +CF G L++NYSL +AWG
Sbjct: 15 PMGPTKVTLQFVAVGSAPLMKRTKFTVNGQDELSVVYKFLRKQLRLKDSDSLFVYCNSSFAPSPGQRLSSLYECFQVGDVLVLNYSLTQAWG 106 The following BLAST results are available for this feature:
BLAST of EWM26340.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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