EWM26340.1, cds4345 (CDS) Nannochloropsis gaditana

Overview
NameEWM26340.1
Unique Namecds4345
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:369139..369780 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26340.1
Productubiquitin-like protein atg12
Orig transcript idgnl|cribi|Naga_100078g13.7015.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:369139..369780 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0009056catabolic process
GO:0000045autophagosome assembly
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR007242Atg12
Homology
BLAST of EWM26340.1 vs. NCBI_GenBank
Match: gi|585108347|gb|EWM26340.1| (ubiquitin-like protein atg12 [Nannochloropsis gaditana])

HSP 1 Score: 425.631 bits (1093), Expect = 1.110e-150
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0
Query:    1 MEEEREEDATSSGAPAASPPSVPQAQAFDEPPSMPTLRIEREDDIPSRTSQATSTALTAATPAMCSRPGGPAGEDFSMNASTSTGGTVDLLRPSASTASSPSAPTPQSTQHSASLCPGQTAPAHAARVKLQLMAVGRAPRLTQSKFFVQASEPFRALFPVLRRLLQLKESEALFVFVNSAFAPAPEDKFGDLQKCFSRGGALIINYSLDEAWG 213
            MEEEREEDATSSGAPAASPPSVPQAQAFDEPPSMPTLRIEREDDIPSRTSQATSTALTAATPAMCSRPGGPAGEDFSMNASTSTGGTVDLLRPSASTASSPSAPTPQSTQHSASLCPGQTAPAHAARVKLQLMAVGRAPRLTQSKFFVQASEPFRALFPVLRRLLQLKESEALFVFVNSAFAPAPEDKFGDLQKCFSRGGALIINYSLDEAWG
Sbjct:    1 MEEEREEDATSSGAPAASPPSVPQAQAFDEPPSMPTLRIEREDDIPSRTSQATSTALTAATPAMCSRPGGPAGEDFSMNASTSTGGTVDLLRPSASTASSPSAPTPQSTQHSASLCPGQTAPAHAARVKLQLMAVGRAPRLTQSKFFVQASEPFRALFPVLRRLLQLKESEALFVFVNSAFAPAPEDKFGDLQKCFSRGGALIINYSLDEAWG 213          
BLAST of EWM26340.1 vs. NCBI_GenBank
Match: gi|325186213|emb|CCA20715.1| (hypothetical protein PITG_10650 [Albugo laibachii Nc14])

HSP 1 Score: 96.2857 bits (238), Expect = 1.754e-22
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 0
Query:  127 RVKLQLMAVGRAPRLTQSKFFVQASEPFRALFPVLRRLLQLKESEALFVFVNSAFAPAPEDKFGDLQKCFSRGGALIINYSLDEAWG 213
            +V L  +AVG AP L ++KF + A++    ++  LR+ L+LK S+ALF++ N AFAPAP+    DLQKCFS    L++NYSL  AWG
Sbjct:    6 KVTLHFVAVGNAPILQKTKFTIDANDTLSVVYDFLRKQLKLKLSDALFIYCNRAFAPAPDQSLLDLQKCFSVDNVLVLNYSLTHAWG 92          
BLAST of EWM26340.1 vs. NCBI_GenBank
Match: gi|1072230414|gb|OEU15147.1| (autophagy-related protein 12b, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 91.6633 bits (226), Expect = 1.253e-20
Identity = 38/92 (41.30%), Postives = 65/92 (70.65%), Query Frame = 0
Query:  122 PAHAARVKLQLMAVGRAPRLTQSKFFVQASEPFRALFPVLRRLLQLKESEALFVFVNSAFAPAPEDKFGDLQKCFSRGGALIINYSLDEAWG 213
            P    ++K+  ++VG AP L ++KF + A + F +++  LR++L+L+  ++LF+++ +AF P PE+  GDL +CFSR G L+I+YSL +AWG
Sbjct:    3 PPSVEKIKVHFVSVGSAPILKKTKFQISADQRFASVYAFLRKVLKLQVGDSLFLYLQAAFCPGPEELVGDLNECFSRRGELVIHYSLQQAWG 94          
BLAST of EWM26340.1 vs. NCBI_GenBank
Match: gi|224003173|ref|XP_002291258.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220973034|gb|EED91365.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 91.2781 bits (225), Expect = 1.384e-20
Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 0
Query:  126 ARVKLQLMAVGRAPRLTQSKFFVQASEPFRALFPVLRRLLQLKESEALFVFVNSAFAPAPEDKFGDLQKCFSRGGALIINYSLDEAWG 213
            +RVK+  +AVG AP L +SKF +   + F      LRRLL+L  + +LF+++N+AF P+P+++ GDL  CF   G L+++YSL EAWG
Sbjct:    4 SRVKVHFVAVGSAPILKKSKFLIGEEDEFGVATAFLRRLLRLDSAPSLFLYINAAFVPSPDERIGDLYDCFGVRGELVVHYSLQEAWG 91          
BLAST of EWM26340.1 vs. NCBI_GenBank
Match: gi|342321002|gb|EGU12940.1| (hypothetical protein RTG_00981 [Rhodotorula toruloides ATCC 204091])

HSP 1 Score: 92.4337 bits (228), Expect = 1.835e-20
Identity = 51/126 (40.48%), Postives = 72/126 (57.14%), Query Frame = 0
Query:   92 RPSASTASSPSAPTPQSTQHSASLCPGQTAPA----HAARVKLQLMAVGRAPRLTQSKFFVQASEPFRALFPVLRRLLQLKESEALFVFVNSAFAPAPEDKFGDLQKCFSRGGALIINYSLDEAWG 213
            RPSA    + SA    +T+  A L P +   A     A +V ++  A G AP + Q+ + + AS  FRA+   LR+ L  K S+ LF+++NS+FAPAP+D   DL KCF     LI+NYS  +AWG
Sbjct:   12 RPSAVRTGTSSAA---ATEQGAKLTPREALEASKLKEATKVVVRFKATGNAPIMKQNFYKITASNQFRAVIAFLRKELAWKPSDPLFLYINSSFAPAPDDTVADLYKCFGTENHLIVNYSSTQAWG 134          
BLAST of EWM26340.1 vs. NCBI_GenBank
Match: gi|669147156|ref|XP_008609140.1| (hypothetical protein SDRG_05214 [Saprolegnia diclina VS20] >gi|530739378|gb|EQC37620.1| hypothetical protein SDRG_05214 [Saprolegnia diclina VS20])

HSP 1 Score: 91.6633 bits (226), Expect = 1.917e-20
Identity = 38/87 (43.68%), Postives = 59/87 (67.82%), Query Frame = 0
Query:  127 RVKLQLMAVGRAPRLTQSKFFVQASEPFRALFPVLRRLLQLKESEALFVFVNSAFAPAPEDKFGDLQKCFSRGGALIINYSLDEAWG 213
            +V +Q  AVG AP + +SKF V  ++P   ++  LR+ L+LK+ +ALFV+ N++FAP P+ K  +L +CF   G L++NYS  +AWG
Sbjct:   21 KVTIQFTAVGGAPIMKRSKFTVNGADPLGVVYSFLRKQLRLKDEDALFVYCNASFAPTPDQKLSELHECFHVNGTLVLNYSRTQAWG 107          
BLAST of EWM26340.1 vs. NCBI_GenBank
Match: gi|673045695|ref|XP_008876808.1| (hypothetical protein H310_11809 [Aphanomyces invadans] >gi|574467470|gb|ETV94493.1| hypothetical protein H310_11809 [Aphanomyces invadans])

HSP 1 Score: 91.6633 bits (226), Expect = 2.466e-20
Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 0
Query:  118 GQTAPAHAARVKLQLMAVGRAPRLTQSKFFVQASEPFRALFPVLRRLLQLKESEALFVFVNSAFAPAPEDKFGDLQKCFSRGGALIINYSLDEAWG 213
            G   P    +V +Q  AVG AP + +SKF V   +P   ++  LR+ L+LK+ +ALFV+ N++FAP P+ +  +L +CF   G L++NYS  +AWG
Sbjct:   18 GNGRPGGPEKVTIQFTAVGGAPIMKRSKFTVNGGDPLSHVYIFLRKQLRLKDDDALFVYCNNSFAPTPDQRMHELYECFHINGVLVLNYSRSQAWG 113          
BLAST of EWM26340.1 vs. NCBI_GenBank
Match: gi|552934870|gb|ESA18187.1| (hypothetical protein GLOINDRAFT_344710 [Rhizophagus irregularis DAOM 181602])

HSP 1 Score: 91.6633 bits (226), Expect = 2.718e-20
Identity = 44/109 (40.37%), Postives = 64/109 (58.72%), Query Frame = 0
Query:  105 TPQSTQHSASLCPGQTAPAHAARVKLQLMAVGRAPRLTQSKFFVQASEPFRALFPVLRRLLQLKESEALFVFVNSAFAPAPEDKFGDLQKCFSRGGALIINYSLDEAWG 213
            TP     + SL   +     A +V ++  A+G AP L Q+ + + AS  F+A+   LRR L  K S+ LF+++NSAF+PAP++   +L KCF+  G LIINY    AWG
Sbjct:   16 TPSQISQNPSLALEKYKKKDAVKVIVRFRAIGNAPILKQNLYKINASNKFQAVIQFLRRELNYKASDPLFLYINSAFSPAPDEIVANLVKCFNTDGHLIINYCTSAAWG 124          
BLAST of EWM26340.1 vs. NCBI_GenBank
Match: gi|595492536|gb|EXX75815.1| (hypothetical protein RirG_038670 [Rhizophagus irregularis DAOM 197198w] >gi|595492538|gb|EXX75817.1| hypothetical protein RirG_038670 [Rhizophagus irregularis DAOM 197198w])

HSP 1 Score: 91.6633 bits (226), Expect = 3.875e-20
Identity = 44/109 (40.37%), Postives = 64/109 (58.72%), Query Frame = 0
Query:  105 TPQSTQHSASLCPGQTAPAHAARVKLQLMAVGRAPRLTQSKFFVQASEPFRALFPVLRRLLQLKESEALFVFVNSAFAPAPEDKFGDLQKCFSRGGALIINYSLDEAWG 213
            TP     + SL   +     A +V ++  A+G AP L Q+ + + AS  F+A+   LRR L  K S+ LF+++NSAF+PAP++   +L KCF+  G LIINY    AWG
Sbjct:   32 TPSQISQNPSLALEKYKKKDAVKVIVRFRAIGNAPILKQNLYKINASNKFQAVIQFLRRELNYKASDPLFLYINSAFSPAPDEIVANLVKCFNTDGHLIINYCTSAAWG 140          
BLAST of EWM26340.1 vs. NCBI_GenBank
Match: gi|953497551|emb|CEG41038.1| (autophagy-related protein 12 [Plasmopara halstedii])

HSP 1 Score: 90.5077 bits (223), Expect = 4.947e-20
Identity = 39/92 (42.39%), Postives = 60/92 (65.22%), Query Frame = 0
Query:  122 PAHAARVKLQLMAVGRAPRLTQSKFFVQASEPFRALFPVLRRLLQLKESEALFVFVNSAFAPAPEDKFGDLQKCFSRGGALIINYSLDEAWG 213
            P    +V LQ +AVG AP + ++KF V   +    ++  LR+ L+LK+S++LFV+ NS+FAP+P  +   L +CF  G  L++NYSL +AWG
Sbjct:   15 PMGPTKVTLQFVAVGSAPLMKRTKFTVNGQDELSVVYKFLRKQLRLKDSDSLFVYCNSSFAPSPGQRLSSLYECFQVGDVLVLNYSLTQAWG 106          
The following BLAST results are available for this feature:
BLAST of EWM26340.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108347|gb|EWM26340.1|1.110e-150100.00ubiquitin-like protein atg12 [Nannochloropsis gadi... [more]
gi|325186213|emb|CCA20715.1|1.754e-2248.28hypothetical protein PITG_10650 [Albugo laibachii ... [more]
gi|1072230414|gb|OEU15147.1|1.253e-2041.30autophagy-related protein 12b, partial [Fragilario... [more]
gi|224003173|ref|XP_002291258.1|1.384e-2045.45predicted protein, partial [Thalassiosira pseudona... [more]
gi|342321002|gb|EGU12940.1|1.835e-2040.48hypothetical protein RTG_00981 [Rhodotorula torulo... [more]
gi|669147156|ref|XP_008609140.1|1.917e-2043.68hypothetical protein SDRG_05214 [Saprolegnia dicli... [more]
gi|673045695|ref|XP_008876808.1|2.466e-2040.63hypothetical protein H310_11809 [Aphanomyces invad... [more]
gi|552934870|gb|ESA18187.1|2.718e-2040.37hypothetical protein GLOINDRAFT_344710 [Rhizophagu... [more]
gi|595492536|gb|EXX75815.1|3.875e-2040.37hypothetical protein RirG_038670 [Rhizophagus irre... [more]
gi|953497551|emb|CEG41038.1|4.947e-2042.39autophagy-related protein 12 [Plasmopara halstedii... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4355rna4355Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications