EWM26332.1, cds4340 (CDS) Nannochloropsis gaditana

Overview
NameEWM26332.1
Unique Namecds4340
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:357879..357923 +
Alignment locationCM002463.1:358053..358162 +
Alignment locationCM002463.1:358630..359685 +
Alignment locationCM002463.1:359917..359998 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26332.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100078g19.7007.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:357879..357923 +
CM002463.1supercontigCM002463.1:358053..358162 +
CM002463.1supercontigCM002463.1:358630..359685 +
CM002463.1supercontigCM002463.1:359917..359998 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM26332.1 vs. NCBI_GenBank
Match: gi|585108339|gb|EWM26332.1| (hypothetical protein Naga_100078g19 [Nannochloropsis gaditana])

HSP 1 Score: 878.241 bits (2268), Expect = 0.000e+0
Identity = 430/430 (100.00%), Postives = 430/430 (100.00%), Query Frame = 0
Query:    1 MSALDSNALRKGKWTSEEEEFTQRMIEYFNTGLLPLPNGTTLRAYLAEKLKCDPMRITKKFTGAACLGRRVYRPSISSSSTRAEPSPSAVASAKSHLMELEARMWQRLERRRENKDYMGCLEYDAGGYDSSYLVSTPAIDALLRQSRNDPHFWDEDVSSTHSSASERRGEEEEEEEEEEEEEEEEGEENMAAVSCMPANFLKTSRAIKTEHQGLGSAWTDQYEGIDPLLPKYSTSSVSSCSSSTTGCSSSGSSESACCSCSFSDGDTADADVSVSLGLELQTCGSVRGGSGSLSRPMKKRARMAASTGSFTDGEYPEEEEEAVEEGLRSGWMDGRRLCWVAGKAWEGSLEEGEEADAGTLMNVVSQLHKSGSHEDLVHFVCGVNQKMEGGAENAGTSKGRGLLRRGPGETIDGYRGGTAGNKHDIFLMKK 430
            MSALDSNALRKGKWTSEEEEFTQRMIEYFNTGLLPLPNGTTLRAYLAEKLKCDPMRITKKFTGAACLGRRVYRPSISSSSTRAEPSPSAVASAKSHLMELEARMWQRLERRRENKDYMGCLEYDAGGYDSSYLVSTPAIDALLRQSRNDPHFWDEDVSSTHSSASERRGEEEEEEEEEEEEEEEEGEENMAAVSCMPANFLKTSRAIKTEHQGLGSAWTDQYEGIDPLLPKYSTSSVSSCSSSTTGCSSSGSSESACCSCSFSDGDTADADVSVSLGLELQTCGSVRGGSGSLSRPMKKRARMAASTGSFTDGEYPEEEEEAVEEGLRSGWMDGRRLCWVAGKAWEGSLEEGEEADAGTLMNVVSQLHKSGSHEDLVHFVCGVNQKMEGGAENAGTSKGRGLLRRGPGETIDGYRGGTAGNKHDIFLMKK
Sbjct:    1 MSALDSNALRKGKWTSEEEEFTQRMIEYFNTGLLPLPNGTTLRAYLAEKLKCDPMRITKKFTGAACLGRRVYRPSISSSSTRAEPSPSAVASAKSHLMELEARMWQRLERRRENKDYMGCLEYDAGGYDSSYLVSTPAIDALLRQSRNDPHFWDEDVSSTHSSASERRGEEEEEEEEEEEEEEEEGEENMAAVSCMPANFLKTSRAIKTEHQGLGSAWTDQYEGIDPLLPKYSTSSVSSCSSSTTGCSSSGSSESACCSCSFSDGDTADADVSVSLGLELQTCGSVRGGSGSLSRPMKKRARMAASTGSFTDGEYPEEEEEAVEEGLRSGWMDGRRLCWVAGKAWEGSLEEGEEADAGTLMNVVSQLHKSGSHEDLVHFVCGVNQKMEGGAENAGTSKGRGLLRRGPGETIDGYRGGTAGNKHDIFLMKK 430          
BLAST of EWM26332.1 vs. NCBI_GenBank
Match: gi|298707207|emb|CBJ29954.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 124.405 bits (311), Expect = 8.089e-31
Identity = 66/122 (54.10%), Postives = 79/122 (64.75%), Query Frame = 0
Query:    7 NAL-RKGKWTSEEEEFTQRMIEYFNTGLLPLPNGTTLRAYLAEKLKCDPMRITKKFTGAACLGRRVYRPSISSSSTRAEPSPSAVASAKSHLMELEARMWQRLERRRENKDYMGCLEYDAGG 127
            NA+ RKGKWTSEEE  T R+I YF+ G+L LP+GTTLRAYLA+KL CDPMRITKKFTG  CLG+RVY      S  R   +      A   L ELEAR   RLER +E +  +  +E+   G
Sbjct:    5 NAMSRKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVY-----HSCERTTATYEVAKQAVEELAELEARFQARLERNKEKRTGILGIEHTKTG 121          
BLAST of EWM26332.1 vs. NCBI_GenBank
Match: gi|676400387|ref|XP_009043471.1| (hypothetical protein AURANDRAFT_69453, partial [Aureococcus anophagefferens] >gi|323444961|gb|EGB01830.1| hypothetical protein AURANDRAFT_69453, partial [Aureococcus anophagefferens])

HSP 1 Score: 128.257 bits (321), Expect = 1.170e-30
Identity = 80/155 (51.61%), Postives = 100/155 (64.52%), Query Frame = 0
Query:    5 DSNALRKGKWTSEEEEFTQRMIEYFNTGLLPLPNGTTLRAYLAEKLKCDPMRITKKFTGAACLGRRVYRPSI---SSSSTRAEPSPSAVASAKSHLMELEARMWQRLERRRENKDYMGCLEYDAGGYDSSYLVSTPAIDALLRQSRNDPHFWDED 156
            D    RKGKWT EE EFT R+IE FNTGLL LP G TLR+YLA+KL CDPMRITKKF+GA+CLG+RV+  S     +S++   PS ++VA+A+  L  LEAR      R  E+KD    ++ +A    S  +VSTPAIDA + QS      WD D
Sbjct:   28 DGATTRKGKWTIEETEFTTRIIELFNTGLLELPEGATLRSYLAQKLSCDPMRITKKFSGASCLGKRVFHSSTGRQRNSASAVAPSAASVAAAQQELSVLEARFVDACIRSTESKDAR-MIDLEARFLHSHDVVSTPAIDAFIMQSCQP--LWDPD 179          
BLAST of EWM26332.1 vs. NCBI_GenBank
Match: gi|1210531978|dbj|GAX09406.1| (hypothetical protein FisN_6Lh221 [Fistulifera solaris])

HSP 1 Score: 124.79 bits (312), Expect = 2.663e-27
Identity = 61/109 (55.96%), Postives = 76/109 (69.72%), Query Frame = 0
Query:    1 MSALDSNALRKGKWTSEEEEFTQRMIEYFNTGLLPLPNGTTLRAYLAEKLKCDPMRITKKFTGAACLGRRVYRPSISSSSTRAEPSPSAVASAKSHLMELEARMWQRLE 109
            +SA + + LRKGKWT EEEE+T R+I YF+TGLL LP G TLR+YLAEKL CDPMRITKK+ GAACLGRR Y+         A P+   +  A++ L +LE R   R+E
Sbjct:   88 ISAKERSMLRKGKWTPEEEEYTSRIIHYFSTGLLILPEGHTLRSYLAEKLNCDPMRITKKYAGAACLGRRAYQ-----YREHAPPTIGEIQLARTQLDDLEHRFRMRVE 191          
BLAST of EWM26332.1 vs. NCBI_GenBank
Match: gi|1210520889|dbj|GAX20270.1| (hypothetical protein FisN_6Hh221 [Fistulifera solaris])

HSP 1 Score: 124.405 bits (311), Expect = 3.833e-27
Identity = 61/109 (55.96%), Postives = 76/109 (69.72%), Query Frame = 0
Query:    1 MSALDSNALRKGKWTSEEEEFTQRMIEYFNTGLLPLPNGTTLRAYLAEKLKCDPMRITKKFTGAACLGRRVYRPSISSSSTRAEPSPSAVASAKSHLMELEARMWQRLE 109
            +SA + + LRKGKWT EEEE+T R+I YF+TGLL LP G TLR+YLAEKL CDPMRITKK+ GAACLGRR Y+         A P+   +  A++ L +LE R   R+E
Sbjct:  125 ISAKERSMLRKGKWTPEEEEYTSRIIHYFSTGLLILPEGYTLRSYLAEKLNCDPMRITKKYAGAACLGRRAYQ-----YREHAPPTIGEIQLARTQLDDLEHRFRMRVE 228          
BLAST of EWM26332.1 vs. NCBI_GenBank
Match: gi|1210526797|dbj|GAX14445.1| (hypothetical protein FisN_11Hh096 [Fistulifera solaris])

HSP 1 Score: 121.324 bits (303), Expect = 5.030e-27
Identity = 54/106 (50.94%), Postives = 77/106 (72.64%), Query Frame = 0
Query:    9 LRKGKWTSEEEEFTQRMIEYFNTGLLPLPNGTTLRAYLAEKLKCDPMRITKKFTGAACLGRRVYRPSISSSSTRAEPSPSAVASAKSHLMELEARMWQRLERRREN 114
            LR+GKWT+EEE +  R+I+ FN+G L  P GTTLR YL+EKL+CDPMRITKKFTG AC+G+RV+ P++     R+  + S +  A++ L+ LE R  +RLE ++ +
Sbjct:  157 LRRGKWTAEEEAYVARVIQDFNSGFLDAPAGTTLRTYLSEKLQCDPMRITKKFTGDACIGKRVFHPAV-----RSPNNVSTIDKAQAELLHLEKRWHRRLESQQRD 257          
BLAST of EWM26332.1 vs. NCBI_GenBank
Match: gi|219128023|ref|XP_002184223.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404454|gb|EEC44401.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 122.479 bits (306), Expect = 5.189e-27
Identity = 57/105 (54.29%), Postives = 75/105 (71.43%), Query Frame = 0
Query:    5 DSNALRKGKWTSEEEEFTQRMIEYFNTGLLPLPNGTTLRAYLAEKLKCDPMRITKKFTGAACLGRRVYRPSISSSSTRAEPSPSAVASAKSHLMELEARMWQRLE 109
            D + LRKGKW+ EEEE+T R+I YF+TG + LP G+TLR+YLA+KL CDPMRITKK+ GA+CLGRRVY+        R +P+ + +  AK+ L  LE R   R+E
Sbjct:  123 DRSKLRKGKWSIEEEEYTSRIIHYFSTGFISLPEGSTLRSYLADKLNCDPMRITKKYAGASCLGRRVYQ-----FRDRVQPTMTEIQIAKAELDHLERRFRLRVE 222          
BLAST of EWM26332.1 vs. NCBI_GenBank
Match: gi|553196459|ref|XP_005856348.1| (hypothetical protein NGA_2018700, partial [Nannochloropsis gaditana CCMP526] >gi|422292702|gb|EKU20004.1| hypothetical protein NGA_2018700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 122.479 bits (306), Expect = 1.669e-26
Identity = 60/119 (50.42%), Postives = 73/119 (61.34%), Query Frame = 0
Query:    6 SNALRKGKWTSEEEEFTQRMIEYFNTGLLPLPNGTTLRAYLAEKLKCDPMRITKKFTGAACLGRRVY-------RPSISSSSTRAEPSPSAVASAKSHLMELEARMWQRLERRRENKDY 117
            S  LRKGKWT EEEE+T R+I YFN GLL LP G TLRAY++ KLKCDPMR+TKKFTGA C+G++ +       +P +         +P  V  AK  L  LE R W  LE+  E   Y
Sbjct:  288 SGILRKGKWTVEEEEYTARLIYYFNRGLLQLPEGQTLRAYISHKLKCDPMRVTKKFTGACCIGKKAFSGAQQALQPHLQRGEVGQGVAPEDVNRAKEELERLEKRFWTTLEQSEEGYCY 406          
BLAST of EWM26332.1 vs. NCBI_GenBank
Match: gi|1072220897|gb|OEU05753.1| (hypothetical protein FRACYDRAFT_258386 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 121.324 bits (303), Expect = 2.522e-26
Identity = 60/101 (59.41%), Postives = 71/101 (70.30%), Query Frame = 0
Query:    9 LRKGKWTSEEEEFTQRMIEYFNTGLLPLPNGTTLRAYLAEKLKCDPMRITKKFTGAACLGRRVYRPSISSSSTRAEPSPSAVASAKSHLMELEARMWQRLE 109
            LRKGKWT EEEE+T R+I+YF+TGLL LP+G TLR+YLA+KL CDPMRITKKFTGA CLGRR Y       ++ AE     V  A   L+ LE R   R+E
Sbjct:   56 LRKGKWTIEEEEYTSRIIQYFSTGLLTLPDGATLRSYLADKLNCDPMRITKKFTGACCLGRRAYHLRDRPRASFAE-----VEMANLELLHLERRFRLRVE 151          
BLAST of EWM26332.1 vs. NCBI_GenBank
Match: gi|585108131|gb|EWM26137.1| (hypothetical protein Naga_100014g82 [Nannochloropsis gaditana])

HSP 1 Score: 120.939 bits (302), Expect = 1.094e-25
Identity = 60/119 (50.42%), Postives = 73/119 (61.34%), Query Frame = 0
Query:    6 SNALRKGKWTSEEEEFTQRMIEYFNTGLLPLPNGTTLRAYLAEKLKCDPMRITKKFTGAACLGRRVY-------RPSISSSSTRAEPSPSAVASAKSHLMELEARMWQRLERRRENKDY 117
            S  LRKGKWT EEEE+T R+I YFN GLL LP G TLRAY++ KLKCDPMR+TKKFTGA C+G++ +       +P +         +P  V  AK  L  LE R W  LE+  E   Y
Sbjct:  388 SGILRKGKWTVEEEEYTARLIYYFNRGLLQLPEGQTLRAYISHKLKCDPMRVTKKFTGACCIGKKAFSGAQQALQPHLQRGEVGQGVAPEDVNRAKEELERLEKRFWTTLEQSEEGYCY 506          
The following BLAST results are available for this feature:
BLAST of EWM26332.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108339|gb|EWM26332.1|0.000e+0100.00hypothetical protein Naga_100078g19 [Nannochlorops... [more]
gi|298707207|emb|CBJ29954.1|8.089e-3154.10conserved unknown protein [Ectocarpus siliculosus][more]
gi|676400387|ref|XP_009043471.1|1.170e-3051.61hypothetical protein AURANDRAFT_69453, partial [Au... [more]
gi|1210531978|dbj|GAX09406.1|2.663e-2755.96hypothetical protein FisN_6Lh221 [Fistulifera sola... [more]
gi|1210520889|dbj|GAX20270.1|3.833e-2755.96hypothetical protein FisN_6Hh221 [Fistulifera sola... [more]
gi|1210526797|dbj|GAX14445.1|5.030e-2750.94hypothetical protein FisN_11Hh096 [Fistulifera sol... [more]
gi|219128023|ref|XP_002184223.1|5.189e-2754.29predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|553196459|ref|XP_005856348.1|1.669e-2650.42hypothetical protein NGA_2018700, partial [Nannoch... [more]
gi|1072220897|gb|OEU05753.1|2.522e-2659.41hypothetical protein FRACYDRAFT_258386 [Fragilario... [more]
gi|585108131|gb|EWM26137.1|1.094e-2550.42hypothetical protein Naga_100014g82 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4350rna4350Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications