EWM30266.1, cds433 (CDS) Nannochloropsis gaditana

Overview
NameEWM30266.1
Unique Namecds433
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1076327..1076585 -
Alignment locationCM002455.1:1076087..1076225 -
Alignment locationCM002455.1:1075884..1075947 -
Alignment locationCM002455.1:1075518..1075682 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30266.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100003g49.1783.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1076327..1076585 -
CM002455.1supercontigCM002455.1:1076087..1076225 -
CM002455.1supercontigCM002455.1:1075884..1075947 -
CM002455.1supercontigCM002455.1:1075518..1075682 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR023222PsbQ-like_domain
Homology
BLAST of EWM30266.1 vs. NCBI_GenBank
Match: gi|585112925|gb|EWM30266.1| (hypothetical protein Naga_100003g49 [Nannochloropsis gaditana])

HSP 1 Score: 427.172 bits (1097), Expect = 2.092e-151
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0
Query:    1 MRALSVGLILATIVGAAAFVVPPLSLPSRDFKIRLSAGGNEDCGTSLERRSALHNSLCQAVTLSMFMFGGATWISAPSQAMAAVGEGGLPAVTEAFQRVIRGQREWNKVGKTIADREGKLADEEWVNTQIFLRNSYMVGEDMRRIVRDAEESKREKGTAIAKDFQRLTLDMDKPTKSKDFQGFIEAQKKGASYFQDFIDLLSDVPDEL 208
            MRALSVGLILATIVGAAAFVVPPLSLPSRDFKIRLSAGGNEDCGTSLERRSALHNSLCQAVTLSMFMFGGATWISAPSQAMAAVGEGGLPAVTEAFQRVIRGQREWNKVGKTIADREGKLADEEWVNTQIFLRNSYMVGEDMRRIVRDAEESKREKGTAIAKDFQRLTLDMDKPTKSKDFQGFIEAQKKGASYFQDFIDLLSDVPDEL
Sbjct:    1 MRALSVGLILATIVGAAAFVVPPLSLPSRDFKIRLSAGGNEDCGTSLERRSALHNSLCQAVTLSMFMFGGATWISAPSQAMAAVGEGGLPAVTEAFQRVIRGQREWNKVGKTIADREGKLADEEWVNTQIFLRNSYMVGEDMRRIVRDAEESKREKGTAIAKDFQRLTLDMDKPTKSKDFQGFIEAQKKGASYFQDFIDLLSDVPDEL 208          
BLAST of EWM30266.1 vs. NCBI_GenBank
Match: gi|397616916|gb|EJK64197.1| (hypothetical protein THAOC_15101 [Thalassiosira oceanica])

HSP 1 Score: 90.8929 bits (224), Expect = 2.727e-19
Identity = 55/150 (36.67%), Postives = 77/150 (51.33%), Query Frame = 0
Query:   61 VTLSMFMFGGATWISAPSQAMAAVGEGG-LPAVTEAFQRVIRGQREWNKVGKTIADREGKLADEEWVNTQIFLRNSYMVGEDMRRIVRD-AEESKREKGTAIAKDFQRLTLDMDKPTKSKDFQGFIEAQKKGASYFQDFIDLLSDVPDEL 208
            V+ S+   G A WIS+PS ++A V +G  LP     F RVI+ + +   V K +A++  ++ ++EW     +LR  Y  G DM+ I +   + SK+ K     K  Q L     KP   KD  GF     K  S F+DF D L DVPDEL
Sbjct:   49 VSSSIAGAGLAVWISSPSPSLADVSDGNSLPQGAAQFSRVIKVRSQLKSVAKRVAEQSSEMDNKEWDKIDEYLRTVYSAGNDMKEISKGMTDPSKKAKAEEDVKLLQGLVQAAQKPVSKKDAAGFGAIANKADSLFEDFFDQLRDVPDEL 198          
BLAST of EWM30266.1 vs. NCBI_GenBank
Match: gi|299116744|emb|CBN74857.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 87.8113 bits (216), Expect = 1.049e-17
Identity = 51/180 (28.33%), Postives = 86/180 (47.78%), Query Frame = 0
Query:   29 RDFKIRLSAGGNEDCGTSLERRSALHNSLCQAVTLSMFMFGGATWISAPSQAMAAVGEGGLPAVTEAFQRVIRGQREWNKVGKTIADREGKLADEEWVNTQIFLRNSYMVGEDMRRIVRDAEESKREKGTAIAKDFQRLTLDMDKPTKSKDFQGFIEAQKKGASYFQDFIDLLSDVPDEL 208
            R    R++ G     G  + R       L  A+T ++ +  G  + SA       VGEGGLP     F  +++ Q++W  +GK+I  +   +  +EW N  +FLR  Y +G ++  +       K++   A+ +  Q+     D P + KD   F++AQ      F+DF++L +DVP EL
Sbjct:   70 RSRATRMTTGALPSDGGGMSRGQWAGRMLGAAITGAVAVSQGPEFASAE----VGVGEGGLPDGARQFSNLVKVQKDWAALGKSIERQGADVTADEWKNVALFLRKVYQLGGELEYLAGTFPPDKKKSALALVRSIQKEVQAADVPAREKDAAAFMKAQASVQKKFEDFMELFNDVPSEL 245          
BLAST of EWM30266.1 vs. NCBI_GenBank
Match: gi|873229124|emb|CEM14000.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 81.6481 bits (200), Expect = 2.415e-15
Identity = 46/133 (34.59%), Postives = 70/133 (52.63%), Query Frame = 0
Query:   77 PSQAMAAVGEGG-LPAVTEAFQRVIRGQREWNKVGKTIADREGKLADEEWVNTQIFLRNSYMVGEDMRRIVRDAEESKREKGTAIAKDFQRLTLDMDKPTKSKDFQGFIEAQKKGASYFQDFIDLLSDVPDEL 208
            P  A A V  G  LPA      R I+ +  W ++G  +  R   +  +EW   + FLR  Y   +DMR I +  +  K ++   + K+F++    MDKP  + D + F+ +Q+K     QDF+D+LSDVPDEL
Sbjct:  117 PVSAYADVYSGDTLPAGALQRDRFIKAKLRWEEMGSALRARTDDITADEWKGLRNFLRAMYKESDDMRFISKGLDPEKDKQSKQLIKNFEKTIESMDKPATAGDKEVFLASQQKITQTMQDFLDVLSDVPDEL 249          
BLAST of EWM30266.1 vs. NCBI_GenBank
Match: gi|551646742|ref|XP_005826157.1| (hypothetical protein GUITHDRAFT_165053 [Guillardia theta CCMP2712] >gi|428170250|gb|EKX39177.1| hypothetical protein GUITHDRAFT_165053 [Guillardia theta CCMP2712])

HSP 1 Score: 79.337 bits (194), Expect = 8.975e-15
Identity = 55/215 (25.58%), Postives = 101/215 (46.98%), Query Frame = 0
Query:    4 LSVGLILATIVGAAAFVVPPLSLPSRDFKIRLSAGGNEDCGTSLERRSALHNSLCQAVTLSMFMFGGATWISAPSQAMAAVGEGGLPAVTEAFQRVIRGQREWNKVGKTIADREGKLADEEWVNTQIFLRNSYMVGEDMRRIVRDAEESKREKGTAIAKDFQRLTLDMDKPTKSKDFQGFIEAQKKGASYFQDFIDLLSD----------VPDEL 208
            L+   IL+ + G +AF  P + + S   K R  A        S+ RR ++   L  A  L+     GA            V +GGLP     +  +I+ +++W ++G  +++   ++++EEW N Q +LR  +  G+DM  + +     +++    ++K+F++    +DKP  +KD++ F+   K    Y  +F D+ S           VPDEL
Sbjct:   11 LASACILSELSGVSAFNAPLVHIQS-SVKTRGRATPLALRMQSVNRRDSIGIMLATAGMLAQTKDVGAK----------DVADGGLPGGLAEYMSIIKSKKQWGEIGNRVSNGHAEMSEEEWKNVQGYLRKFFDTGKDMEVVAKAFSPEEQKAVAEVSKEFRKAVKGIDKPAAAKDWETFMAQHKVILGYIDEFQDIRSGKKKIQSNAQYVPDEL 214          
BLAST of EWM30266.1 vs. NCBI_GenBank
Match: gi|223998250|ref|XP_002288798.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975906|gb|EED94234.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 76.2554 bits (186), Expect = 1.014e-13
Identity = 46/135 (34.07%), Postives = 67/135 (49.63%), Query Frame = 0
Query:   77 PSQAMAAVGEG-GLPAVTEAFQRVIRGQREWNKVGKTIADREGKLADEEWVNTQIFLRNSYMVGEDMRRIVRDA--EESKREKGTAIAKDFQRLTLDMDKPTKSKDFQGFIEAQKKGASYFQDFIDLLSDVPDEL 208
            P  ++A V +G  LP     F RVI+ + +   V K +A++  ++   EW     FLR  Y  GEDM+ I + +  + +K+ K     K  Q++      P   KD  GF     K  + F+DF DLL DVPDEL
Sbjct:   63 PLPSVADVSDGNALPQGAAQFSRVIKVRAQLKSVAKRVAEQSSEIDKNEWNKIDDFLRTVYSAGEDMKVIAKSSIFDPAKKAKADEDIKLLQKVAQAAQGPVSKKDPVGFGTVANKADALFEDFFDLLRDVPDEL 197          
BLAST of EWM30266.1 vs. NCBI_GenBank
Match: gi|1210516718|dbj|GAX24207.1| (hypothetical protein FisN_4Lh299 [Fistulifera solaris])

HSP 1 Score: 68.9366 bits (167), Expect = 6.475e-11
Identity = 58/205 (28.29%), Postives = 92/205 (44.88%), Query Frame = 0
Query:   17 AAFVVPPLSLPSRDFKIRLSAGGNEDCGTSLERRSALHNSLCQAVTLSMF-------MFGGATWISA-----PSQAMAAVGEGG-LPAVTEAFQRVIRGQREWNKVGKTIADREGKLADEEWVNTQIFLRNSY-MVGEDMRRIVRDAEESK-REKGTAIAKDFQRLTLDMDKPTKSKDFQGFIEAQKKGASYFQDFIDLLSDVPD 206
            +A+++  ++LP+       S   + D   +L  RSA++ S     T +M        +F  A   +A     PS A A V  G  LP     F R IR +R+  KV K + +   ++   EW N   FLR  Y + G+DM+ +    + +  +++    A   ++     D P  +KD  GF+   +K     QDF D L DVPD
Sbjct:    4 SAYLLILVTLPTATMSWVTSRVTSSD---ALRSRSAVYESSASVSTTTMNRQRFLQGIFTAALTTTAVITQQPSIARADVYSGTELPQGVAQFNRCIRLKRDLKKVTKRVQENSSEMDSTEWDNVGKFLRQIYSLAGDDMKVVASTIQSADMKQRALQDADKLRQYAQAADVPVSAKDATGFVLVAQKMNDLVQDFFDALVDVPD 205          
BLAST of EWM30266.1 vs. NCBI_GenBank
Match: gi|1210516406|dbj|GAX24741.1| (hypothetical protein FisN_4Hh299 [Fistulifera solaris])

HSP 1 Score: 64.6994 bits (156), Expect = 2.717e-9
Identity = 48/165 (29.09%), Postives = 74/165 (44.85%), Query Frame = 0
Query:   45 TSLERRSALHNSLCQAVTLSMFMFGGATWISAPSQAMAAVGEGG-LPAVTEAFQRVIRGQREWNKVGKTIADREGKLADEEWVNTQIFLRNSY-MVGEDMRRIVRDAEESK-REKGTAIAKDFQRLTLDMDKPTKSKDFQGFIEAQKKGASYFQDFIDLLSDVPD 206
            T++ R+  L      A+T +      A     P+ A A V  G  LP     F R IR +R+  KV K + +   ++   EW N   FLR  Y + G+DM+ +    + +  +++    A   ++     D P  +KD  GF+   +K     QDF D L DVPD
Sbjct:   46 TTMNRQRFLQGMFTAALTTT------AVITQQPTIAHADVYSGTELPQGVAQFNRCIRLKRDLKKVTKRVQENSSEMDAAEWDNVGKFLRQIYSLAGDDMKVVAGTIQSADMKQRALQDADKLRQYAQAADVPVSAKDATGFVLVAQKMNDLVQDFFDALVDVPD 204          
BLAST of EWM30266.1 vs. NCBI_GenBank
Match: gi|1189392083|gb|OSX79002.1| (hypothetical protein BU14_0093s0046 [Porphyra umbilicalis])

HSP 1 Score: 61.2326 bits (147), Expect = 5.389e-9
Identity = 32/88 (36.36%), Postives = 47/88 (53.41%), Query Frame = 0
Query:  124 EWVNTQIFLRNSYMVGEDMRRIVRDAEESKREKGTAIAKDFQRLTLDMDKPTKSKDFQGFIEAQKKGASYFQDFIDLL---SDVPDEL 208
            EW N + +LR  Y VG+DM  + +   +  ++   AIAK  ++   DMDKP   KD++ F+ A     +   DF   L   SD+PDEL
Sbjct:    5 EWNNVRTYLRKFYSVGDDMVALGKGRGKESKQAVEAIAKSLRKTVKDMDKPAAVKDWEAFLVAHAAATTLVDDFFGYLKSSSDIPDEL 92          
BLAST of EWM30266.1 vs. NCBI_GenBank
Match: gi|219130179|ref|XP_002185249.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403428|gb|EEC43381.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 63.1586 bits (152), Expect = 7.814e-9
Identity = 49/153 (32.03%), Postives = 72/153 (47.06%), Query Frame = 0
Query:   67 MFGGATWISA-----PSQAMAAVGEG-GLPAVTEAFQRVIRGQREWNKVGKTIADREGKLADEEWVNTQIFLRNSYMVGEDMRRI---VRDAEESKR--EKGTAIAKDFQRLTLDMDKPTKSKDFQGFIEAQKKGASYFQDFIDLLSDVPDEL 208
            +FG A +++      PS A A V  G  LP     F RV+R + +   V K +++   ++  +EW N   FLR  Y  G+DM+ +   V D E  KR  E  + + K  Q   + + K    KD  G +    K      DF D LSD+PDE+
Sbjct:   53 IFGAAGFLATSVTFMPSSASADVSSGTALPQGAAQFNRVVRVKSDLTAVRKRVSEGGSEIDKKEWDNIGKFLRTVYSTGDDMKAVGGGVLDPENKKRAMEDVSQLRKYAQAGDVSVSK----KDPIGMLAVLNKMIGLMDDFFDALSDIPDEI 201          
The following BLAST results are available for this feature:
BLAST of EWM30266.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112925|gb|EWM30266.1|2.092e-151100.00hypothetical protein Naga_100003g49 [Nannochlorops... [more]
gi|397616916|gb|EJK64197.1|2.727e-1936.67hypothetical protein THAOC_15101 [Thalassiosira oc... [more]
gi|299116744|emb|CBN74857.1|1.049e-1728.33conserved unknown protein [Ectocarpus siliculosus][more]
gi|873229124|emb|CEM14000.1|2.415e-1534.59unnamed protein product [Vitrella brassicaformis C... [more]
gi|551646742|ref|XP_005826157.1|8.975e-1525.58hypothetical protein GUITHDRAFT_165053 [Guillardia... [more]
gi|223998250|ref|XP_002288798.1|1.014e-1334.07predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210516718|dbj|GAX24207.1|6.475e-1128.29hypothetical protein FisN_4Lh299 [Fistulifera sola... [more]
gi|1210516406|dbj|GAX24741.1|2.717e-929.09hypothetical protein FisN_4Hh299 [Fistulifera sola... [more]
gi|1189392083|gb|OSX79002.1|5.389e-936.36hypothetical protein BU14_0093s0046 [Porphyra umbi... [more]
gi|219130179|ref|XP_002185249.1|7.814e-932.03predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna433rna433Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications