EWM30316.1, cds432 (CDS) Nannochloropsis gaditana

Overview
NameEWM30316.1
Unique Namecds432
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1074824..1075273 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30316.1
Producthsbp1-like protein
Orig transcript idgnl|cribi|Naga_100003g50.1833.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1074824..1075273 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0140110transcription regulator activity
Vocabulary: INTERPRO
TermDefinition
IPR009643HS1-bd
Homology
BLAST of EWM30316.1 vs. NCBI_GenBank
Match: gi|585112975|gb|EWM30316.1| (hsbp1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 300.442 bits (768), Expect = 3.451e-103
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0
Query:    1 MSSSRPTSTTTSGVGSKGGQSSKPKSDTPSSAAPVLSKCDPNIPTSSSDCLGSAIQLPHGEPQGHLARQDDPARYVRSLLDDMQSRFENMSQQILSKIDTFGSKVDALEAEISELMNEAGAEFEDEVLGKSEGKGKEVLSEKITLDSEA 149
            MSSSRPTSTTTSGVGSKGGQSSKPKSDTPSSAAPVLSKCDPNIPTSSSDCLGSAIQLPHGEPQGHLARQDDPARYVRSLLDDMQSRFENMSQQILSKIDTFGSKVDALEAEISELMNEAGAEFEDEVLGKSEGKGKEVLSEKITLDSEA
Sbjct:    1 MSSSRPTSTTTSGVGSKGGQSSKPKSDTPSSAAPVLSKCDPNIPTSSSDCLGSAIQLPHGEPQGHLARQDDPARYVRSLLDDMQSRFENMSQQILSKIDTFGSKVDALEAEISELMNEAGAEFEDEVLGKSEGKGKEVLSEKITLDSEA 149          
BLAST of EWM30316.1 vs. NCBI_GenBank
Match: gi|553184328|ref|XP_005854070.1| (hsbp1-like protein [Nannochloropsis gaditana CCMP526] >gi|422294992|gb|EKU22291.1| hsbp1-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 297.36 bits (760), Expect = 6.394e-102
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 0
Query:    1 MSSSRPTSTTTSGVGSKGGQSSKPKSDTPSSAAPVLSKCDPNIPTSSSDCLGSAIQLPHGEPQGHLARQDDPARYVRSLLDDMQSRFENMSQQILSKIDTFGSKVDALEAEISELMNEAGAEFEDEVLGKSEGKGKEVLSEKITLDSEA 149
            MSSSRPTSTTTSGVGSKGGQSSKPKSDTPSSAAPV SKCDPNIPTSSSDCLGSAIQLPHGEPQGHLARQDDPARYVRSLLDDMQSRFENMSQQILSKIDTFGSKVDALEAEISELMNEAGAEFEDEVLGKSEGKGKEVLSEKITLDSEA
Sbjct:    1 MSSSRPTSTTTSGVGSKGGQSSKPKSDTPSSAAPVPSKCDPNIPTSSSDCLGSAIQLPHGEPQGHLARQDDPARYVRSLLDDMQSRFENMSQQILSKIDTFGSKVDALEAEISELMNEAGAEFEDEVLGKSEGKGKEVLSEKITLDSEA 149          
BLAST of EWM30316.1 vs. NCBI_GenBank
Match: gi|1199382815|ref|XP_021186001.1| (heat shock factor-binding protein 1 [Helicoverpa armigera])

HSP 1 Score: 62.3882 bits (150), Expect = 3.338e-10
Identity = 32/86 (37.21%), Postives = 54/86 (62.79%), Query Frame = 0
Query:   39 CDPNIPTSSSDCLGSAIQLPHGEPQGHLARQDDPARYVRSLLDDMQSRFENMSQQILSKIDTFGSKVDALEAEISELMNEAGAEFE 124
             + N  T+++D + S    P  +P+       +  +YV+SLL +MQ +F++MS QI+++ID  G++VD LE  I++LM +AG E E
Sbjct:    2 AEQNTDTTTTD-VESTYTAPGNDPKNM----QEVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGTRVDELEKNITDLMTQAGVENE 82          
BLAST of EWM30316.1 vs. NCBI_GenBank
Match: gi|528258820|gb|EPY37670.1| (hypothetical protein AGDE_06264 [Angomonas deanei] >gi|528268833|gb|EPY40989.1| hypothetical protein AGDE_02936 [Angomonas deanei])

HSP 1 Score: 62.003 bits (149), Expect = 4.861e-10
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 0
Query:   75 YVRSLLDDMQSRFENMSQQILSKIDTFGSKVDALEAEISELMNEAGAEFEDEVLGKSEGKGK 136
            +V+ LL  MQSRFE MS  I+S+ID  G+++D LE  I ELM +AG E ED    K++GK K
Sbjct:   21 FVQGLLQQMQSRFEEMSNNIISRIDDMGTRIDDLEKSIDELMQQAGTEEED--TPKAKGKKK 80          
BLAST of EWM30316.1 vs. NCBI_GenBank
Match: gi|512925699|ref|XP_004930902.1| (heat shock factor-binding protein 1 [Bombyx mori])

HSP 1 Score: 62.003 bits (149), Expect = 4.911e-10
Identity = 27/52 (51.92%), Postives = 40/52 (76.92%), Query Frame = 0
Query:   73 ARYVRSLLDDMQSRFENMSQQILSKIDTFGSKVDALEAEISELMNEAGAEFE 124
             +YV+SLL +MQ +F++MS QI+++ID  GS+VD LE  I++LM +AG E E
Sbjct:   31 TQYVQSLLQNMQDKFQSMSDQIINRIDEMGSRVDELEKNITDLMTQAGVENE 82          
BLAST of EWM30316.1 vs. NCBI_GenBank
Match: gi|914568425|gb|KOB72376.1| (Heat Shock Factor binding protein 1 [Operophtera brumata])

HSP 1 Score: 61.2326 bits (147), Expect = 9.247e-10
Identity = 26/51 (50.98%), Postives = 39/51 (76.47%), Query Frame = 0
Query:   74 RYVRSLLDDMQSRFENMSQQILSKIDTFGSKVDALEAEISELMNEAGAEFE 124
            +YV+SLL +MQ +F+NMS QI+++ID   ++VD LE  I++LM +AG E E
Sbjct:   32 QYVQSLLQNMQDKFQNMSDQIINRIDDMSTRVDELEKNITDLMTQAGVENE 82          
BLAST of EWM30316.1 vs. NCBI_GenBank
Match: gi|913304573|ref|XP_013201226.1| (PREDICTED: heat shock factor-binding protein 1 isoform X1 [Amyelois transitella] >gi|913304576|ref|XP_013201227.1| PREDICTED: heat shock factor-binding protein 1 isoform X2 [Amyelois transitella])

HSP 1 Score: 61.2326 bits (147), Expect = 9.757e-10
Identity = 26/52 (50.00%), Postives = 40/52 (76.92%), Query Frame = 0
Query:   73 ARYVRSLLDDMQSRFENMSQQILSKIDTFGSKVDALEAEISELMNEAGAEFE 124
             +YV+SLL +MQ +F++MS QI+++ID  G++VD LE  I++LM +AG E E
Sbjct:   31 TQYVQSLLQNMQDKFQSMSDQIINRIDEMGTRVDELEKNITDLMTQAGVENE 82          
BLAST of EWM30316.1 vs. NCBI_GenBank
Match: gi|909557790|ref|XP_013133878.1| (PREDICTED: heat shock factor-binding protein 1 [Papilio polytes])

HSP 1 Score: 61.2326 bits (147), Expect = 1.098e-9
Identity = 28/79 (35.44%), Postives = 49/79 (62.03%), Query Frame = 0
Query:   46 SSSDCLGSAIQLPHGEPQGHLARQDDPARYVRSLLDDMQSRFENMSQQILSKIDTFGSKVDALEAEISELMNEAGAEFE 124
            ++ D + S ++  +  P        +  +YV++LL  MQ +F++MS QI+++ID  G++VD LE  I++LM +AG E E
Sbjct:    4 NNPDSIPSDVENTYNTPANDPKNMQEVTQYVQTLLQTMQDKFQSMSDQIINRIDEMGTRVDELEKNITDLMTQAGVENE 82          
BLAST of EWM30316.1 vs. NCBI_GenBank
Match: gi|768444043|ref|XP_011563860.1| (PREDICTED: heat shock factor-binding protein 1 [Plutella xylostella])

HSP 1 Score: 60.8474 bits (146), Expect = 1.327e-9
Identity = 32/86 (37.21%), Postives = 52/86 (60.47%), Query Frame = 0
Query:   39 CDPNIPTSSSDCLGSAIQLPHGEPQGHLARQDDPARYVRSLLDDMQSRFENMSQQILSKIDTFGSKVDALEAEISELMNEAGAEFE 124
             DPNI   + +   +    P  +P+       +  +YV+SLL +MQ +F++MS QI+++ID  G++VD LE  I++LM +AG E E
Sbjct:    2 ADPNIDAINDE--ENTYNTPANDPKNM----QEVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGTRVDELEKNITDLMTQAGVEGE 81          
BLAST of EWM30316.1 vs. NCBI_GenBank
Match: gi|910330118|ref|XP_013168342.1| (PREDICTED: heat shock factor-binding protein 1 [Papilio xuthus] >gi|943958878|ref|XP_014362111.1| PREDICTED: heat shock factor-binding protein 1 [Papilio machaon] >gi|930652298|gb|KPI94638.1| Heat shock factor-binding protein 1 [Papilio xuthus] >gi|930671542|gb|KPJ12254.1| Heat shock factor-binding protein 1 [Papilio machaon])

HSP 1 Score: 60.4622 bits (145), Expect = 1.917e-9
Identity = 28/76 (36.84%), Postives = 47/76 (61.84%), Query Frame = 0
Query:   49 DCLGSAIQLPHGEPQGHLARQDDPARYVRSLLDDMQSRFENMSQQILSKIDTFGSKVDALEAEISELMNEAGAEFE 124
            D + S ++  +  P        +  +YV++LL  MQ +F++MS QI+++ID  G++VD LE  I++LM +AG E E
Sbjct:    7 DSIPSDVENTYTTPANDPKNMQEVTQYVQTLLQTMQDKFQSMSDQIINRIDEMGTRVDELEKNITDLMTQAGVENE 82          
The following BLAST results are available for this feature:
BLAST of EWM30316.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112975|gb|EWM30316.1|3.451e-103100.00hsbp1-like protein [Nannochloropsis gaditana][more]
gi|553184328|ref|XP_005854070.1|6.394e-10299.33hsbp1-like protein [Nannochloropsis gaditana CCMP5... [more]
gi|1199382815|ref|XP_021186001.1|3.338e-1037.21heat shock factor-binding protein 1 [Helicoverpa a... [more]
gi|528258820|gb|EPY37670.1|4.861e-1051.61hypothetical protein AGDE_06264 [Angomonas deanei]... [more]
gi|512925699|ref|XP_004930902.1|4.911e-1051.92heat shock factor-binding protein 1 [Bombyx mori][more]
gi|914568425|gb|KOB72376.1|9.247e-1050.98Heat Shock Factor binding protein 1 [Operophtera b... [more]
gi|913304573|ref|XP_013201226.1|9.757e-1050.00PREDICTED: heat shock factor-binding protein 1 iso... [more]
gi|909557790|ref|XP_013133878.1|1.098e-935.44PREDICTED: heat shock factor-binding protein 1 [Pa... [more]
gi|768444043|ref|XP_011563860.1|1.327e-937.21PREDICTED: heat shock factor-binding protein 1 [Pl... [more]
gi|910330118|ref|XP_013168342.1|1.917e-936.84PREDICTED: heat shock factor-binding protein 1 [Pa... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna432rna432Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications