EWM26353.1, cds4311 (CDS) Nannochloropsis gaditana

Overview
NameEWM26353.1
Unique Namecds4311
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:288818..288863 -
Alignment locationCM002463.1:288517..288627 -
Alignment locationCM002463.1:288011..288288 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26353.1
Productdiphthamide biosynthesis protein 3
Orig transcript idgnl|cribi|Naga_100031g13.2236.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:288818..288863 -
CM002463.1supercontigCM002463.1:288517..288627 -
CM002463.1supercontigCM002463.1:288011..288288 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006139nucleobase-containing compound metabolic process
GO:0006464cellular protein modification process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR007872Znf_DHP
Homology
BLAST of EWM26353.1 vs. NCBI_GenBank
Match: gi|585108363|gb|EWM26353.1| (diphthamide biosynthesis protein 3 [Nannochloropsis gaditana])

HSP 1 Score: 299.286 bits (765), Expect = 6.637e-103
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
Query:    1 MGERLGQGASVHTINDGACAGVYFHSGRPFSSVAWRRVRKAGPRSNSWLFFEDLSAHISKMSIYEEVEIEDMDFEEEEQHYTYPCPCGDKFVITLAELWDGEDVAPCPSCTLRIRVVYEEEALPPLKASEAGGSAGAGMAVAVH 144
            MGERLGQGASVHTINDGACAGVYFHSGRPFSSVAWRRVRKAGPRSNSWLFFEDLSAHISKMSIYEEVEIEDMDFEEEEQHYTYPCPCGDKFVITLAELWDGEDVAPCPSCTLRIRVVYEEEALPPLKASEAGGSAGAGMAVAVH
Sbjct:    1 MGERLGQGASVHTINDGACAGVYFHSGRPFSSVAWRRVRKAGPRSNSWLFFEDLSAHISKMSIYEEVEIEDMDFEEEEQHYTYPCPCGDKFVITLAELWDGEDVAPCPSCTLRIRVVYEEEALPPLKASEAGGSAGAGMAVAVH 144          
BLAST of EWM26353.1 vs. NCBI_GenBank
Match: gi|1173949529|gb|OQR97555.1| (diphthamide biosynthesis protein [Achlya hypogyna])

HSP 1 Score: 108.997 bits (271), Expect = 1.465e-28
Identity = 47/73 (64.38%), Postives = 61/73 (83.56%), Query Frame = 0
Query:   61 MSIYEEVEIEDMDFEEEEQHYTYPCPCGDKFVITLAELWDGEDVAPCPSCTLRIRVVYEEEALPPLKASEAGG 133
            MS+Y+EVEIEDM+F+E EQ Y YPCPCGDKF I L EL+DGED+A CPSC+L IR++++E+ALPPL+  +  G
Sbjct:    1 MSVYDEVEIEDMEFDEAEQIYYYPCPCGDKFFIGLDELYDGEDIASCPSCSLTIRIIFDEDALPPLREDDEDG 73          
BLAST of EWM26353.1 vs. NCBI_GenBank
Match: gi|223998808|ref|XP_002289077.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220976185|gb|EED94513.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 107.071 bits (266), Expect = 6.113e-28
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 0
Query:   61 MSIYEEVEIEDMDFEEEEQHYTYPCPCGDKFVITLAELWDGEDVAPCPSCTLRIRVVYEEEALPPL 126
            MSIYEEVE ED+D++   Q YTYPCPCGDKF ITL  LWDGED+A CPSCTLRI ++YEE  LPPL
Sbjct:    1 MSIYEEVEFEDLDYDPLTQTYTYPCPCGDKFSITLEALWDGEDIATCPSCTLRIEIIYEESDLPPL 66          
BLAST of EWM26353.1 vs. NCBI_GenBank
Match: gi|219110459|ref|XP_002176981.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411516|gb|EEC51444.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 105.145 bits (261), Expect = 3.971e-27
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 0
Query:   61 MSIYEEVEIEDMDFEEEEQHYTYPCPCGDKFVITLAELWDGEDVAPCPSCTLRIRVVYEEEAL 123
            MSIYEEVEIEDM F+E+E  YTYPCPCGDKF ITL ELW+GEDVA CPSCTLRI V++EEE L
Sbjct:    1 MSIYEEVEIEDMIFDEDELVYTYPCPCGDKFRITLEELWEGEDVAKCPSCTLRIMVIFEEEDL 63          
BLAST of EWM26353.1 vs. NCBI_GenBank
Match: gi|673044757|ref|XP_008876339.1| (hypothetical protein H310_11430 [Aphanomyces invadans] >gi|574468146|gb|ETV95166.1| hypothetical protein H310_11430 [Aphanomyces invadans])

HSP 1 Score: 103.99 bits (258), Expect = 2.733e-26
Identity = 43/80 (53.75%), Postives = 60/80 (75.00%), Query Frame = 0
Query:   61 MSIYEEVEIEDMDFEEEEQHYTYPCPCGDKFVITLAELWDGEDVAPCPSCTLRIRVVYEEEALPPLKASEAGGSAGAGMA 140
            MS Y+E+EIEDM+++E+EQ YTYPCPCGD F ITL +L+DG+D+  CPSC+L IRV+++E+ LP L+  E    A   + 
Sbjct:    1 MSTYDEIEIEDMEYDEKEQIYTYPCPCGDNFFITLQDLYDGDDIGTCPSCSLTIRVIFDEDNLPELRDEEDDDCAVDDLV 80          
BLAST of EWM26353.1 vs. NCBI_GenBank
Match: gi|1210528891|dbj|GAX12534.1| (diphthamide biosynthesis protein 3 [Fistulifera solaris])

HSP 1 Score: 102.834 bits (255), Expect = 5.761e-26
Identity = 48/60 (80.00%), Postives = 52/60 (86.67%), Query Frame = 0
Query:   61 MSIYEEVEIEDMDFEEEEQHYTYPCPCGDKFVITLAELWDGEDVAPCPSCTLRIRVVYEE 120
            MSIYEEVEIEDM F+EE+  YTYPCPCGDKF ITL EL DGED+A CPSCTLRI V+YEE
Sbjct:    1 MSIYEEVEIEDMFFDEEQLVYTYPCPCGDKFRITLEELHDGEDIAKCPSCTLRIMVIYEE 60          
BLAST of EWM26353.1 vs. NCBI_GenBank
Match: gi|698808714|ref|XP_009837386.1| (hypothetical protein H257_11993 [Aphanomyces astaci] >gi|574107670|gb|ETV73181.1| hypothetical protein H257_11993 [Aphanomyces astaci])

HSP 1 Score: 102.834 bits (255), Expect = 7.667e-26
Identity = 41/67 (61.19%), Postives = 57/67 (85.07%), Query Frame = 0
Query:   61 MSIYEEVEIEDMDFEEEEQHYTYPCPCGDKFVITLAELWDGEDVAPCPSCTLRIRVVYEEEALPPLK 127
            MS+Y+E+EIEDM++ E+EQ YTYPCPCGD F ITL +L+DG+D+  CPSC+L IRV+++E+ LP L+
Sbjct:    1 MSVYDEIEIEDMEYNEKEQLYTYPCPCGDNFFITLQDLYDGDDIGSCPSCSLTIRVIFDEDNLPELR 67          
BLAST of EWM26353.1 vs. NCBI_GenBank
Match: gi|397566088|gb|EJK44901.1| (hypothetical protein THAOC_36525 [Thalassiosira oceanica])

HSP 1 Score: 102.834 bits (255), Expect = 7.938e-26
Identity = 43/67 (64.18%), Postives = 55/67 (82.09%), Query Frame = 0
Query:   61 MSIYEEVEIEDMDFEEEEQHYTYPCPCGDKFVITLAELWDGEDVAPCPSCTLRIRVVYEEEALPPLK 127
            MSIYEE+E ED++++ + Q YTYPCPCGD F I+L  LWDGED+A CPSCTLRI ++Y+EE LP L+
Sbjct:    1 MSIYEEIEFEDLNYDPKTQMYTYPCPCGDMFSISLEALWDGEDIATCPSCTLRIEIIYDEEDLPELR 67          
BLAST of EWM26353.1 vs. NCBI_GenBank
Match: gi|675209203|ref|XP_008913486.1| (hypothetical protein PPTG_17582 [Phytophthora parasitica INRA-310] >gi|566011902|gb|ETI34813.1| hypothetical protein F443_18751 [Phytophthora parasitica P1569] >gi|567949366|gb|ETK75098.1| hypothetical protein L915_18235 [Phytophthora parasitica] >gi|567978042|gb|ETL28536.1| hypothetical protein L916_18141 [Phytophthora parasitica] >gi|568007554|gb|ETL81791.1| hypothetical protein L917_17955 [Phytophthora parasitica] >gi|568037410|gb|ETM34995.1| hypothetical protein L914_18041 [Phytophthora parasitica] >gi|568086267|gb|ETN01159.1| hypothetical protein PPTG_17582 [Phytophthora parasitica INRA-310] >gi|570315606|gb|ETO63554.1| hypothetical protein F444_18751 [Phytophthora parasitica P1976] >gi|570939395|gb|ETP04652.1| hypothetical protein F441_18614 [Phytophthora parasitica CJ01A1] >gi|570969681|gb|ETP32800.1| hypothetical protein F442_18567 [Phytophthora parasitica P10297])

HSP 1 Score: 100.138 bits (248), Expect = 4.486e-25
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 0
Query:   62 SIYEEVEIEDMDFEEEEQHYTYPCPCGDKFVITLAELWDGEDVAPCPSCTLRIRVVYEEEALPPLKASE 130
            S+Y+EVEIEDM+F+ EEQ Y YPCPCGD+F I L EL+DGED+A CPSC+L IRV+++EE LP L   E
Sbjct:    3 SVYDEVEIEDMEFDAEEQVYYYPCPCGDRFSIDLEELYDGEDIATCPSCSLTIRVIFDEENLPELAEEE 71          
BLAST of EWM26353.1 vs. NCBI_GenBank
Match: gi|669139348|ref|XP_008605242.1| (hypothetical protein SDRG_01493 [Saprolegnia diclina VS20] >gi|530743286|gb|EQC41528.1| hypothetical protein SDRG_01493 [Saprolegnia diclina VS20])

HSP 1 Score: 99.3673 bits (246), Expect = 8.585e-25
Identity = 42/67 (62.69%), Postives = 56/67 (83.58%), Query Frame = 0
Query:   61 MSIYEEVEIEDMDFEEEEQHYTYPCPCGDKFVITLAELWDGEDVAPCPSCTLRIRVVYEEEALPPLK 127
            MS+Y+E+EIEDM+F E++Q Y YPCPCGDKF I L EL DGED+A CPSC+L IR++++ +ALP L+
Sbjct:    1 MSVYDEIEIEDMEFNEDDQVYYYPCPCGDKFFIGLDELHDGEDIASCPSCSLTIRIIFDADALPELR 67          
The following BLAST results are available for this feature:
BLAST of EWM26353.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108363|gb|EWM26353.1|6.637e-103100.00diphthamide biosynthesis protein 3 [Nannochloropsi... [more]
gi|1173949529|gb|OQR97555.1|1.465e-2864.38diphthamide biosynthesis protein [Achlya hypogyna][more]
gi|223998808|ref|XP_002289077.1|6.113e-2872.73predicted protein, partial [Thalassiosira pseudona... [more]
gi|219110459|ref|XP_002176981.1|3.971e-2779.37predicted protein, partial [Phaeodactylum tricornu... [more]
gi|673044757|ref|XP_008876339.1|2.733e-2653.75hypothetical protein H310_11430 [Aphanomyces invad... [more]
gi|1210528891|dbj|GAX12534.1|5.761e-2680.00diphthamide biosynthesis protein 3 [Fistulifera so... [more]
gi|698808714|ref|XP_009837386.1|7.667e-2661.19hypothetical protein H257_11993 [Aphanomyces astac... [more]
gi|397566088|gb|EJK44901.1|7.938e-2664.18hypothetical protein THAOC_36525 [Thalassiosira oc... [more]
gi|675209203|ref|XP_008913486.1|4.486e-2565.22hypothetical protein PPTG_17582 [Phytophthora para... [more]
gi|669139348|ref|XP_008605242.1|8.585e-2562.69hypothetical protein SDRG_01493 [Saprolegnia dicli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4321rna4321Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications