EWM26401.1, cds4274 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM26401.1 vs. NCBI_GenBank
Match: gi|553193965|ref|XP_005855864.1| (hypothetical protein NGA_0525000 [Nannochloropsis gaditana CCMP526] >gi|422293189|gb|EKU20489.1| hypothetical protein NGA_0525000 [Nannochloropsis gaditana CCMP526] >gi|585108418|gb|EWM26401.1| hypothetical protein Naga_100365g4 [Nannochloropsis gaditana]) HSP 1 Score: 533.487 bits (1373), Expect = 0.000e+0 Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0 Query: 1 MKISRFLFISLVPMMARSTSMGDRRRRCPAFSFLGLTLPAIPDLQMPTSPIEVKLVYQRVLDPIHYGDYCGPTPEITPDTGCRHPLNLAALDDTDEICRLHDHFYCKCDSVYHRQGKSPPSSALIATRSLSADFRKTYFANLDKDYYMCVHEADQEMLGKFDTLVSEGRLPPSYWDPLTRWKFDSLLDVFRRNMAVDAEILDLQAQDGRERGRAYWFEEDADAHAVKQGPGDDVPPARSEGKGSQVVTAAATSMTH 256 MKISRFLFISLVPMMARSTSMGDRRRRCPAFSFLGLTLPAIPDLQMPTSPIEVKLVYQRVLDPIHYGDYCGPTPEITPDTGCRHPLNLAALDDTDEICRLHDHFYCKCDSVYHRQGKSPPSSALIATRSLSADFRKTYFANLDKDYYMCVHEADQEMLGKFDTLVSEGRLPPSYWDPLTRWKFDSLLDVFRRNMAVDAEILDLQAQDGRERGRAYWFEEDADAHAVKQGPGDDVPPARSEGKGSQVVTAAATSMTH Sbjct: 1 MKISRFLFISLVPMMARSTSMGDRRRRCPAFSFLGLTLPAIPDLQMPTSPIEVKLVYQRVLDPIHYGDYCGPTPEITPDTGCRHPLNLAALDDTDEICRLHDHFYCKCDSVYHRQGKSPPSSALIATRSLSADFRKTYFANLDKDYYMCVHEADQEMLGKFDTLVSEGRLPPSYWDPLTRWKFDSLLDVFRRNMAVDAEILDLQAQDGRERGRAYWFEEDADAHAVKQGPGDDVPPARSEGKGSQVVTAAATSMTH 256
BLAST of EWM26401.1 vs. NCBI_GenBank
Match: gi|873231157|emb|CEM08964.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 78.5666 bits (192), Expect = 3.867e-13 Identity = 46/143 (32.17%), Postives = 78/143 (54.55%), Query Frame = 0 Query: 58 QRVLDPIH-YGDYCGPTPEITPDTGCRHPLNLA-ALDDTDEICRLHDHFYCKCD-SVYHRQGKSPPSSALIATRSLSADFRKTYFANLDKDYYMCVHEADQEMLGKFDTLVSEGRLPPSYWDPLTRWKFDSLLDVFRRNMAVD 197 QRV++ ++ YG YCGPT E++ T CR + A +D D C HD YC C+ + +++ ++ P+S IA R L F +D+ Y+ C+H AD+ + ++ +S+ PS+W TR KF + +F+ ++ D Sbjct: 101 QRVINSLNRYGTYCGPTKELSVATQCRPRRDDAIPVDGVDRTCMQHDVNYCTCELYLQNKKKRAAPASITIAGRYLLPPFLFD-MKGVDEQYFRCIHNADEILYKSLESRLSDSSGLPSWWGYWTRLKFRIAMGLFKNDLDND 242
BLAST of EWM26401.1 vs. NCBI_GenBank
Match: gi|1072236888|gb|OEU21616.1| (hypothetical protein FRACYDRAFT_235242 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 63.929 bits (154), Expect = 1.978e-8 Identity = 43/129 (33.33%), Postives = 66/129 (51.16%), Query Frame = 0 Query: 59 RVLDPIHYGDYCGPTPEITPDTGCR-HPLNL-AALDDTDEICRLHDHFYCKCDS-VYHRQGKSPPSS---ALIATRSLSADFRKTYFANLDKDYYMCVHEADQEMLGKFDTLVSEGRLPPSYWDPLTRW 181 R L P Y +YCGPTPE+T CR H + A D+ D C+LHD YC C+S + R+ K P++ +LIA R ++ T +D++Y CV++AD ++ L + + +P W Sbjct: 53 RKLYPGTYKNYCGPTPEVTVRDNCRAHGWHGDEASDEVDSACQLHDISYCHCESGLMERKAKIKPTNSLASLIALRFITLPAL-TRLDLVDREYLRCVNQADTNLITTGIRLRQQNQQSNCKINPSLGW 180 The following BLAST results are available for this feature:
BLAST of EWM26401.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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