EWM26401.1, cds4274 (CDS) Nannochloropsis gaditana

Overview
NameEWM26401.1
Unique Namecds4274
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:181124..181314 -
Alignment locationCM002463.1:180963..180996 -
Alignment locationCM002463.1:180766..180881 -
Alignment locationCM002463.1:180397..180557 -
Alignment locationCM002463.1:180029..180135 -
Alignment locationCM002463.1:179767..179928 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26401.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100365g4.937.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:181124..181314 -
CM002463.1supercontigCM002463.1:180963..180996 -
CM002463.1supercontigCM002463.1:180766..180881 -
CM002463.1supercontigCM002463.1:180397..180557 -
CM002463.1supercontigCM002463.1:180029..180135 -
CM002463.1supercontigCM002463.1:179767..179928 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM26401.1 vs. NCBI_GenBank
Match: gi|553193965|ref|XP_005855864.1| (hypothetical protein NGA_0525000 [Nannochloropsis gaditana CCMP526] >gi|422293189|gb|EKU20489.1| hypothetical protein NGA_0525000 [Nannochloropsis gaditana CCMP526] >gi|585108418|gb|EWM26401.1| hypothetical protein Naga_100365g4 [Nannochloropsis gaditana])

HSP 1 Score: 533.487 bits (1373), Expect = 0.000e+0
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0
Query:    1 MKISRFLFISLVPMMARSTSMGDRRRRCPAFSFLGLTLPAIPDLQMPTSPIEVKLVYQRVLDPIHYGDYCGPTPEITPDTGCRHPLNLAALDDTDEICRLHDHFYCKCDSVYHRQGKSPPSSALIATRSLSADFRKTYFANLDKDYYMCVHEADQEMLGKFDTLVSEGRLPPSYWDPLTRWKFDSLLDVFRRNMAVDAEILDLQAQDGRERGRAYWFEEDADAHAVKQGPGDDVPPARSEGKGSQVVTAAATSMTH 256
            MKISRFLFISLVPMMARSTSMGDRRRRCPAFSFLGLTLPAIPDLQMPTSPIEVKLVYQRVLDPIHYGDYCGPTPEITPDTGCRHPLNLAALDDTDEICRLHDHFYCKCDSVYHRQGKSPPSSALIATRSLSADFRKTYFANLDKDYYMCVHEADQEMLGKFDTLVSEGRLPPSYWDPLTRWKFDSLLDVFRRNMAVDAEILDLQAQDGRERGRAYWFEEDADAHAVKQGPGDDVPPARSEGKGSQVVTAAATSMTH
Sbjct:    1 MKISRFLFISLVPMMARSTSMGDRRRRCPAFSFLGLTLPAIPDLQMPTSPIEVKLVYQRVLDPIHYGDYCGPTPEITPDTGCRHPLNLAALDDTDEICRLHDHFYCKCDSVYHRQGKSPPSSALIATRSLSADFRKTYFANLDKDYYMCVHEADQEMLGKFDTLVSEGRLPPSYWDPLTRWKFDSLLDVFRRNMAVDAEILDLQAQDGRERGRAYWFEEDADAHAVKQGPGDDVPPARSEGKGSQVVTAAATSMTH 256          
BLAST of EWM26401.1 vs. NCBI_GenBank
Match: gi|873231157|emb|CEM08964.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 78.5666 bits (192), Expect = 3.867e-13
Identity = 46/143 (32.17%), Postives = 78/143 (54.55%), Query Frame = 0
Query:   58 QRVLDPIH-YGDYCGPTPEITPDTGCRHPLNLA-ALDDTDEICRLHDHFYCKCD-SVYHRQGKSPPSSALIATRSLSADFRKTYFANLDKDYYMCVHEADQEMLGKFDTLVSEGRLPPSYWDPLTRWKFDSLLDVFRRNMAVD 197
            QRV++ ++ YG YCGPT E++  T CR   + A  +D  D  C  HD  YC C+  + +++ ++ P+S  IA R L   F       +D+ Y+ C+H AD+ +    ++ +S+    PS+W   TR KF   + +F+ ++  D
Sbjct:  101 QRVINSLNRYGTYCGPTKELSVATQCRPRRDDAIPVDGVDRTCMQHDVNYCTCELYLQNKKKRAAPASITIAGRYLLPPFLFD-MKGVDEQYFRCIHNADEILYKSLESRLSDSSGLPSWWGYWTRLKFRIAMGLFKNDLDND 242          
BLAST of EWM26401.1 vs. NCBI_GenBank
Match: gi|1072236888|gb|OEU21616.1| (hypothetical protein FRACYDRAFT_235242 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 63.929 bits (154), Expect = 1.978e-8
Identity = 43/129 (33.33%), Postives = 66/129 (51.16%), Query Frame = 0
Query:   59 RVLDPIHYGDYCGPTPEITPDTGCR-HPLNL-AALDDTDEICRLHDHFYCKCDS-VYHRQGKSPPSS---ALIATRSLSADFRKTYFANLDKDYYMCVHEADQEMLGKFDTLVSEGRLPPSYWDPLTRW 181
            R L P  Y +YCGPTPE+T    CR H  +   A D+ D  C+LHD  YC C+S +  R+ K  P++   +LIA R ++     T    +D++Y  CV++AD  ++     L  + +      +P   W
Sbjct:   53 RKLYPGTYKNYCGPTPEVTVRDNCRAHGWHGDEASDEVDSACQLHDISYCHCESGLMERKAKIKPTNSLASLIALRFITLPAL-TRLDLVDREYLRCVNQADTNLITTGIRLRQQNQQSNCKINPSLGW 180          
The following BLAST results are available for this feature:
BLAST of EWM26401.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|553193965|ref|XP_005855864.1|0.000e+0100.00hypothetical protein NGA_0525000 [Nannochloropsis ... [more]
gi|873231157|emb|CEM08964.1|3.867e-1332.17unnamed protein product [Vitrella brassicaformis C... [more]
gi|1072236888|gb|OEU21616.1|1.978e-833.33hypothetical protein FRACYDRAFT_235242 [Fragilario... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4284rna4284Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications