EWM26414.1, cds4258 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26414.1 vs. NCBI_GenBank
Match: gi|585108444|gb|EWM26414.1| (exosome complex component rrp46 [Nannochloropsis gaditana]) HSP 1 Score: 546.199 bits (1406), Expect = 0.000e+0 Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0
Query: 1 MSMEVESPPITPLPPSSLSLSLPPRPDRRLANQLRPPMCELGPLNRADGSARFAQGQTSVLAAVYGPAAPRFSRKERVEGAAVEVTVHPHYGLATSSEKEKEGAVKALLEAAICLERFPRTVIHVICQVCEDNGGLMACLMNAASLAVINAGIDMKYVPLTVSMALISPPSATMKALPSLPSSSSTTAPTSSSTYLLLDPINEEERQSIATITIGISSVDQNVLSCQSMGIMMPSQLFEAIDVAKGAAKALMAFLRMTIEEHSRHISKEK 270
MSMEVESPPITPLPPSSLSLSLPPRPDRRLANQLRPPMCELGPLNRADGSARFAQGQTSVLAAVYGPAAPRFSRKERVEGAAVEVTVHPHYGLATSSEKEKEGAVKALLEAAICLERFPRTVIHVICQVCEDNGGLMACLMNAASLAVINAGIDMKYVPLTVSMALISPPSATMKALPSLPSSSSTTAPTSSSTYLLLDPINEEERQSIATITIGISSVDQNVLSCQSMGIMMPSQLFEAIDVAKGAAKALMAFLRMTIEEHSRHISKEK
Sbjct: 1 MSMEVESPPITPLPPSSLSLSLPPRPDRRLANQLRPPMCELGPLNRADGSARFAQGQTSVLAAVYGPAAPRFSRKERVEGAAVEVTVHPHYGLATSSEKEKEGAVKALLEAAICLERFPRTVIHVICQVCEDNGGLMACLMNAASLAVINAGIDMKYVPLTVSMALISPPSATMKALPSLPSSSSTTAPTSSSTYLLLDPINEEERQSIATITIGISSVDQNVLSCQSMGIMMPSQLFEAIDVAKGAAKALMAFLRMTIEEHSRHISKEK 270
BLAST of EWM26414.1 vs. NCBI_GenBank
Match: gi|553182109|ref|XP_005853681.1| (exosome complex component RRP46, partial [Nannochloropsis gaditana CCMP526] >gi|422295380|gb|EKU22679.1| exosome complex component RRP46, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 479.174 bits (1232), Expect = 2.630e-170 Identity = 237/242 (97.93%), Postives = 239/242 (98.76%), Query Frame = 0
Query: 1 MSMEVESPPITPLPPSSLSLSLPPRPDRRLANQLRPPMCELGPLNRADGSARFAQGQTSVLAAVYGPAAPRFSRKERVEGAAVEVTVHPHYGLATSSEKEKEGAVKALLEAAICLERFPRTVIHVICQVCEDNGGLMACLMNAASLAVINAGIDMKYVPLTVSMALISPPSATMKALPSLPSSSSTTAPTSSSTYLLLDPINEEERQSIATITIGISSVDQNVLSCQSMGIMMPSQLFEAID 242
MSMEVESPPITPLPPSSLSLSLPPRPDRRLANQLRPPMCELGPLNRADGSARFAQGQTSVLAAVYGPAAPRFSRKERVEGAAVEVTVHPHYGLATSSEKEKEGAVKALLEAAICLERFPRTVIHVICQV EDNGGLMACLMNAASLAVINAGIDMKYVPLTVS+ALISPPSATMKALPSLP SSSTTAPTSSSTYLLLDPINEEERQSIA ITIGISSVDQNVLSCQSMG+MMPSQLFEAID
Sbjct: 3 MSMEVESPPITPLPPSSLSLSLPPRPDRRLANQLRPPMCELGPLNRADGSARFAQGQTSVLAAVYGPAAPRFSRKERVEGAAVEVTVHPHYGLATSSEKEKEGAVKALLEAAICLERFPRTVIHVICQVYEDNGGLMACLMNAASLAVINAGIDMKYVPLTVSLALISPPSATMKALPSLPPSSSTTAPTSSSTYLLLDPINEEERQSIAAITIGISSVDQNVLSCQSMGVMMPSQLFEAID 244
BLAST of EWM26414.1 vs. NCBI_GenBank
Match: gi|66809981|ref|XP_638714.1| (hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4] >gi|60467336|gb|EAL65367.1| hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4]) HSP 1 Score: 150.214 bits (378), Expect = 6.497e-41 Identity = 80/238 (33.61%), Postives = 132/238 (55.46%), Query Frame = 0
Query: 25 RPDRRLANQLRPPMCELGPLNRADGSARFAQGQTSVLAAVYGPAAPRFSRKERVEGAAVEVTVHPHYGLATSSEKEKEGAVKALLEAAICLERFPRTVIHVICQVCEDNGGLMACLMNAASLAVINAGIDMKYVPLTVSMALISPPSATMKALPSLPSSSSTTAPTSSSTYLLLDPINEEERQSIATITIGISSVDQNVLSCQSMGIMMPSQLFEAIDVAKGAAKALMAFLRMTIEEH 262
R D R N +RP E G LN+ADGSA+F+Q ++ VLAAVYGP +RKE++ + VEVT P +G +KEKE +K +E+ I +PRT I VI QV D+G +++C +NAA LA+++AGI+M + +V++ + S + +DP EEE QS A SS+++N++ +++G + Q F+ +D A + +++F+++ ++
Sbjct: 7 RNDGRCENSIRPVESEQGSLNKADGSAKFSQDKSKVLAAVYGPIEVNSARKEKILKSYVEVTFTPAFGNTNYIDKEKELLIKNAVESMILTTLYPRTQISVILQVFSDDGSIVSCAINAACLALLDAGIEMNGLLGSVTLCFNNDGS------------------------IYVDPSTEEENQSKAIAIYSFSSINKNIVLSKTIGTLTEDQYFKGLDKASESCDLIISFIKLAVKNR 220
BLAST of EWM26414.1 vs. NCBI_GenBank
Match: gi|675168033|ref|XP_008892901.1| (hypothetical protein PPTG_01379 [Phytophthora parasitica INRA-310] >gi|675168035|ref|XP_008892902.1| hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|675168037|ref|XP_008892903.1| hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|566022709|gb|ETI45620.1| hypothetical protein F443_09870 [Phytophthora parasitica P1569] >gi|566022710|gb|ETI45621.1| hypothetical protein, variant 1 [Phytophthora parasitica P1569] >gi|566022711|gb|ETI45622.1| hypothetical protein, variant 2 [Phytophthora parasitica P1569] >gi|567960006|gb|ETK85570.1| hypothetical protein L915_09669 [Phytophthora parasitica] >gi|567960007|gb|ETK85571.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|567960008|gb|ETK85572.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|567988726|gb|ETL38999.1| hypothetical protein L916_09572 [Phytophthora parasitica] >gi|567988727|gb|ETL39000.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|567988728|gb|ETL39001.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568017943|gb|ETL92120.1| hypothetical protein L917_09497 [Phytophthora parasitica] >gi|568017944|gb|ETL92121.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568017945|gb|ETL92122.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568048364|gb|ETM45419.1| hypothetical protein L914_09536 [Phytophthora parasitica] >gi|568048365|gb|ETM45420.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568048366|gb|ETM45421.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568106436|gb|ETN21066.1| hypothetical protein PPTG_01379 [Phytophthora parasitica INRA-310] >gi|568106437|gb|ETN21067.1| hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|568106438|gb|ETN21068.1| hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|570326316|gb|ETO74264.1| hypothetical protein F444_09964 [Phytophthora parasitica P1976] >gi|570326317|gb|ETO74265.1| hypothetical protein, variant 1 [Phytophthora parasitica P1976] >gi|570326318|gb|ETO74266.1| hypothetical protein, variant 2 [Phytophthora parasitica P1976] >gi|570950173|gb|ETP15430.1| hypothetical protein F441_09818 [Phytophthora parasitica CJ01A1] >gi|570950174|gb|ETP15431.1| hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >gi|570950175|gb|ETP15432.1| hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1] >gi|570983725|gb|ETP43500.1| hypothetical protein F442_09773 [Phytophthora parasitica P10297] >gi|570983726|gb|ETP43501.1| hypothetical protein, variant 1 [Phytophthora parasitica P10297] >gi|570983727|gb|ETP43502.1| hypothetical protein, variant 2 [Phytophthora parasitica P10297]) HSP 1 Score: 145.591 bits (366), Expect = 3.817e-39 Identity = 83/241 (34.44%), Postives = 124/241 (51.45%), Query Frame = 0
Query: 25 RPDRRLANQLRPPMCELGPLNRADGSARFAQGQTSVLAAVYGPAAPRFSRKERVEGAAVEVTVHPHYGLATSSEKEKEGAVKALLEAAICLERFPRTVIHVICQVCEDNGGLMACLMNAASLAVINAGIDMKYVPLTVSMALISPPSATMKALPSLPSSSSTTAPTSSSTYLLLDPINEEERQSIATITIGISSVDQNVLSCQSMGIMMPSQLFEAIDVAKGAAKALMAFLRMTIEEHSRH 265
R D R N+LRP E G L RADGSAR + G ++VLAAVYGP R R E+ + A ++V G+ TS EKE E ++ + + FPR VI ++ QV EDNG L+A +NA SLA+++AG+ M V S ++ + L LDP + EE ++++ +T SS VL+C S G++ Q F + + A++++ AF R I + +H
Sbjct: 8 RQDGRAGNELRPFASEQGALFRADGSARMSHGSSTVLAAVYGPGQARNWRAEKTDKATLDVCFKLEKGIMTSKEKEYEQIIRETFTPVVLTDNFPRAVISIVVQVIEDNGSLLAVAINAVSLALMDAGVPMISVVTATSCSIFDDGN------------------------LYLDPTSAEEEEAVSWVTTARSSTSDGVLTCISNGLLSEEQYFACSEACQRASESVAAFFR--IVQQKKH 222
BLAST of EWM26414.1 vs. NCBI_GenBank
Match: gi|298710388|emb|CBJ25452.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 144.436 bits (363), Expect = 8.590e-39 Identity = 91/238 (38.24%), Postives = 134/238 (56.30%), Query Frame = 0
Query: 25 RPDRRLANQLRPPMCELGPLNRADGSARFAQGQTSVLAAVYGPAAPRFSRKERVEGAAVEVTVHPHYGLATSSEKEKEGAVKALLEAAICLERFPRTVIHVICQVCEDNGGLMACLMNAASLAVINAGIDMKYVPLTVSMALISPPSATMKALPSLPSSSSTTAPTSSSTYLLLDPINEEERQSIATITIGISSVDQNVLSCQSMGIMMPSQLFEAIDVAKGAAKALMAFLRMTIEEH 262
R D R ANQ+RP E G LNRADGSARF QG TSVLAAVYGPA + R ER EGA ++V+ P G+ +S++ E E ++ LE + R+PRTV+ VI QV D+G +++ +NAA++A++NAG++M + L+V+ + + T S +LLDP EE + AT + S VLSC ++G M + F + A A+ +F+R++ E+
Sbjct: 5 RRDGRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSLRMERSEGATLDVSFKPESGITSSADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITA---------------------TVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCHAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQK 221
BLAST of EWM26414.1 vs. NCBI_GenBank
Match: gi|673052809|ref|XP_008880365.1| (hypothetical protein H310_14314 [Aphanomyces invadans] >gi|574463921|gb|ETV90976.1| hypothetical protein H310_14314 [Aphanomyces invadans]) HSP 1 Score: 142.124 bits (357), Expect = 6.413e-38 Identity = 80/236 (33.90%), Postives = 127/236 (53.81%), Query Frame = 0
Query: 25 RPDRRLANQLRPPMCELGPLNRADGSARFAQGQTSVLAAVYGPAAPRFSRKERVEGAAVEVTVHPHYGLATSSEKEKEGAVKALLEAAICLERFPRTVIHVICQVCEDNGGLMACLMNAASLAVINAGIDMKYVPLTVSMALISPPSATMKALPSLPSSSSTTAPTSSSTYLLLDPINEEERQSIATITIGISSVDQNVLSCQSMGIMMPSQLFEAIDVAKGAAKALMAFLRMTIE 260
R D RL ++RP CE G LNRADGSARF G TSVLA+V GPAA + R E+V+ A VEV G T+ +KE E +K + + +E +PR VI + QV ED+G L+A +NA +LA+++AGI M+ + ++ +++ L LDP E + A++T + + +L+ + G++ SQ F A ++ + A ++++F+R+ E
Sbjct: 10 RDDGRLVQEIRPLSCEQGLLNRADGSARFCHGSTSVLASVNGPAAAKIRRHEKVDAATVEVVFKSDKGAPTARDKEYEAILKQTFDPIVYVENYPRAVISITVQVVEDDGSLLAVAINAVNLALLDAGIPMRSLVGAITCSILDDGQ------------------------LCLDPSLTEGDAATASVTAAYAGKNDGILTSITTGLVNESQYFAASEICRRAIDSVLSFVRIAQE 221
BLAST of EWM26414.1 vs. NCBI_GenBank
Match: gi|698812994|ref|XP_009839526.1| (hypothetical protein H257_13641 [Aphanomyces astaci] >gi|574105339|gb|ETV70863.1| hypothetical protein H257_13641 [Aphanomyces astaci]) HSP 1 Score: 141.354 bits (355), Expect = 1.488e-37 Identity = 79/236 (33.47%), Postives = 129/236 (54.66%), Query Frame = 0
Query: 25 RPDRRLANQLRPPMCELGPLNRADGSARFAQGQTSVLAAVYGPAAPRFSRKERVEGAAVEVTVHPHYGLATSSEKEKEGAVKALLEAAICLERFPRTVIHVICQVCEDNGGLMACLMNAASLAVINAGIDMKYVPLTVSMALISPPSATMKALPSLPSSSSTTAPTSSSTYLLLDPINEEERQSIATITIGISSVDQNVLSCQSMGIMMPSQLFEAIDVAKGAAKALMAFLRMTIE 260
R D RL ++RP CE G LNRADGSARF+ G TSV+A+V GPAA + R+E+V+ A +EV G T+ +KE E ++ E + LE FPR VI + QV ED+G L+A +NA +LA+++AGI M+ + ++ +++ L LDP E + A++T + + +L+ + G++ SQ F + ++ + A ++++F+R+ E
Sbjct: 11 REDGRLVQEIRPLSCEQGLLNRADGSARFSHGSTSVVASVNGPAAAKNRRQEKVDAATLEVVFKSDKGAPTARDKEYEVILRQTFETVVYLENFPRAVISLTVQVVEDDGSLLAVAINAVNLALLDAGIPMRSLVGAITCSILDDGQ------------------------LCLDPSLTEGDAATASVTAACAGKNDGILTSLTTGLLNESQYFASSEICRRAIDSVLSFVRIAQE 222
BLAST of EWM26414.1 vs. NCBI_GenBank
Match: gi|813135132|ref|XP_012198388.1| (hypothetical protein SPRG_04585 [Saprolegnia parasitica CBS 223.65] >gi|641536813|gb|KDO30684.1| hypothetical protein SPRG_04585 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 137.887 bits (346), Expect = 3.317e-36 Identity = 83/241 (34.44%), Postives = 128/241 (53.11%), Query Frame = 0
Query: 24 PRPDRR----LANQLRPPMCELGPLNRADGSARFAQGQTSVLAAVYGPAAPRFSRKERVEGAAVEVTVHPHYGLATSSEKEKEGAVKALLEAAICLERFPRTVIHVICQVCEDNGGLMACLMNAASLAVINAGIDMKYVPLTVSMALISPPSATMKALPSLPSSSSTTAPTSSSTYLLLDPINEEERQSIATITIGISSVDQNVLSCQSMGIMMPSQLFEAIDVAKGAAKALMAFLRMTIE 260
P PDRR L ++RP CE G LNRADGSARF G TSVLA+V GPAA + R+E+ GA +EVT G ++ +KE E ++ E I LE FPR V+ + QV ED+G L+A +NA +LA+I+AG+ M+ + ++ +++ L LDP E + AT+T + +L+ + G++ Q F ++ + A +++AF+R++ E
Sbjct: 2 PTPDRREDGRLVQEIRPLACEQGLLNRADGSARFNHGTTSVLASVSGPAAAKLRRQEKATGATLEVTFKAEKGAPSARDKEYEMILRETFEPIIVLENFPRAVVSITVQVVEDDGALLAVAINAVNLALIDAGVPMRSIVGAITCSIL------------------------EDGQLCLDPSRSEGETAAATVTTACCGNNDGILTSMTSGVLSEEQYFACSEICRRAIDSVLAFVRISQE 218
BLAST of EWM26414.1 vs. NCBI_GenBank
Match: gi|754352959|ref|XP_011270851.1| (hypothetical protein CAOG_09141 [Capsaspora owczarzaki ATCC 30864] >gi|765557598|gb|KJE97874.1| hypothetical protein CAOG_009141 [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 137.502 bits (345), Expect = 4.961e-36 Identity = 91/244 (37.30%), Postives = 130/244 (53.28%), Query Frame = 0
Query: 25 RPDRRLANQLRPPMCELGPLNRADGSARFAQGQTSVLAAVYGPAAPRFSRKERVEGAAVEVTVHPHYGLATSSEKEKEGAVKALLEAAICLERFPRTVIHVICQVCEDNGGLMACLMNAASLAVINAGIDMKYVPLTVSMALISPPSATMKALPSLPSSSSTTAPTSSSTYLLLDPINEEERQSIATITIGISSVDQNVLSCQSMGIMMPSQLFEAIDVAKGAAKALMAFLRMTIEEHSRHISK 268
R D R+ NQLR E L+RADGS+RF+Q TS L AVYGPA + S KE ++ A V+ P GLA + E ++ LE I PRT I VI QV D+G L+AC +N+AS+A+I+AG+ M V V+ A LP+ A SS LLLDP EE+ + + T S +Q ++ + G + + F I++A+ AA ++AF+R+++E R SK
Sbjct: 4 RADGRMPNQLRELSIEHAVLSRADGSSRFSQRDTSALTAVYGPAEVK-SSKELLDKATVQTVFRPKTGLAGVDDHVCEAILRQALEPVIQRTANPRTSITVIVQVMHDDGALLACALNSASMALIDAGVPMSAVLAAVTCAW----------LPA--------ADGSSERRLLLDPTLEEQTAATSIATFAFESTNQEIVFSSTEGQLTVDEYFYTIEMAQKAAANVLAFMRLSLE---RKFSK 225
BLAST of EWM26414.1 vs. NCBI_GenBank
Match: gi|470267268|ref|XP_004362002.1| (hypothetical protein DFA_06297 [Dictyostelium fasciculatum] >gi|328875787|gb|EGG24151.1| hypothetical protein DFA_06297 [Dictyostelium fasciculatum]) HSP 1 Score: 137.887 bits (346), Expect = 3.742e-35 Identity = 81/236 (34.32%), Postives = 132/236 (55.93%), Query Frame = 0
Query: 24 PRPDRRLANQLRPPMCELGPLNRADGSARFAQGQTSVLAAVYGPAAPRFSRKERVEGAAVEVTVHPHYGLATSSEKEKEGAVKALLEAAICLERFPRTVIHVICQVCEDNGGLMACLMNAASLAVINAGIDMKYVPLTVSMALISPPSATMKALPSLPSSSSTTAPTSSSTYLLLDPINEEERQSIATITIGISSVDQNVLSCQSMGIMMPSQLFEAIDVAKGAAKALMAFLRMTI 259
R D RL+NQ+RP E LN+ADGSA+F+QG++SVLAAVYGP + +RKE++ + V+V+ P G T +KE+E V+ +E+ I PRT I+VI QV ++G +++C +NA LA+++AGI++ LI SS T + + LDP +EE S I+S + V++ ++ GI+ S F+ +++AK + + + A+ R+ +
Sbjct: 84 KRDDTRLSNQIRPIESEQALLNKADGSAKFSQGKSSVLAAVYGPIDVKTARKEKISKSVVDVSFTPATGNTTYFDKEREMLVRNAVESIILTLLHPRTQINVIVQVYSNDGSIISCAINACCLALLDAGIELN--------CLI----------------SSITLSFTHDNQIYLDPTQKEENNSKGLAVYAINSKSEIVMT-KTTGIIGESLYFQGLNIAKQSCEKVSAYTRLAV 294 The following BLAST results are available for this feature:
BLAST of EWM26414.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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