EWM26441.1, cds4231 (CDS) Nannochloropsis gaditana

Overview
NameEWM26441.1
Unique Namecds4231
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:55983..56039 +
Alignment locationCM002463.1:56238..56636 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26441.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100344g1.10761.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:55983..56039 +
CM002463.1supercontigCM002463.1:56238..56636 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM26441.1 vs. NCBI_GenBank
Match: gi|585108485|gb|EWM26441.1| (hypothetical protein Naga_100344g1 [Nannochloropsis gaditana])

HSP 1 Score: 306.605 bits (784), Expect = 1.276e-105
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0 
Query:    1 MTEGLYEAVREQLLCQAERVCDLENSLLQARRITCEVDRRFASFASSLPSPLPPALPSPHGTLSSGVTDNGSRDGKEGEDEEVGMHGRKEEMQESLDRLGGRIRLFAAQALGDAWRGYQVGKEGEMMRGGKGDGEHEEGRKRRHISFFVGS 151
            MTEGLYEAVREQLLCQAERVCDLENSLLQARRITCEVDRRFASFASSLPSPLPPALPSPHGTLSSGVTDNGSRDGKEGEDEEVGMHGRKEEMQESLDRLGGRIRLFAAQALGDAWRGYQVGKEGEMMRGGKGDGEHEEGRKRRHISFFVGS
Sbjct:    1 MTEGLYEAVREQLLCQAERVCDLENSLLQARRITCEVDRRFASFASSLPSPLPPALPSPHGTLSSGVTDNGSRDGKEGEDEEVGMHGRKEEMQESLDRLGGRIRLFAAQALGDAWRGYQVGKEGEMMRGGKGDGEHEEGRKRRHISFFVGS 151
[Close]
BLAST of EWM26441.1 vs. NCBI_GenBank
Match: gi|553183683|ref|XP_005853943.1| (hypothetical protein NGA_0427900, partial [Nannochloropsis gaditana CCMP526] >gi|422295121|gb|EKU22420.1| hypothetical protein NGA_0427900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 206.068 bits (523), Expect = 9.299e-66
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0 
Query:   19 RVCDLENSLLQARRITCEVDRRFASFASSLPSPLPPALPSPHGTLSSGVTDNGSRDGKEGEDEEVGMHGRKEEMQESLDRLGGRIRLFAAQALGDAWRGYQ 119
            +VCDLENSLLQARRITCEVDRRFASFASSLPSPLPPALPSPHGTLSSGVTDNGSRDGKEGEDEEVGMHGRKEEMQESLDRLGGRIRLFAAQALGDAWRGYQ
Sbjct:    6 QVCDLENSLLQARRITCEVDRRFASFASSLPSPLPPALPSPHGTLSSGVTDNGSRDGKEGEDEEVGMHGRKEEMQESLDRLGGRIRLFAAQALGDAWRGYQ 106
The following BLAST results are available for this feature:
BLAST of EWM26441.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585108485|gb|EWM26441.1|1.276e-105100.00hypothetical protein Naga_100344g1 [Nannochloropsi... [more]
gi|553183683|ref|XP_005853943.1|9.299e-6699.01hypothetical protein NGA_0427900, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4241rna4241Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications