EWM26447.1, cds4225 (CDS) Nannochloropsis gaditana

Overview
NameEWM26447.1
Unique Namecds4225
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:40160..41057 -
Alignment locationCM002463.1:39859..39972 -
Alignment locationCM002463.1:39441..39691 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26447.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100144g4.5968.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:40160..41057 -
CM002463.1supercontigCM002463.1:39859..39972 -
CM002463.1supercontigCM002463.1:39441..39691 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM26447.1 vs. NCBI_GenBank
Match: gi|585108494|gb|EWM26447.1| (hypothetical protein Naga_100144g4 [Nannochloropsis gaditana])

HSP 1 Score: 863.603 bits (2230), Expect = 0.000e+0
Identity = 420/420 (100.00%), Postives = 420/420 (100.00%), Query Frame = 0
Query:    1 MSTSAITVPHVMHLPCSILLVLSSLHYTTFAVHSFVGSSFVENSSENEAVLSTVPDLKSLLPSTGCPRGRGCGLRGGLDQLETSYSFSTSPSPTSSIAYSNSRDLPNIHEGSREPVITNFAPSRVNLVSATQKTESESTATLSAALPTATTLPALLDQDSVVSTVYNQSVQLQKKGAKGKDKMCDPTPVDRRVDQLDLEGACVGSWGGFYDRIVSVTFNARTLESQALRISSFCASPCGPLFDRQVREFRNACQEGLMRMEEQEDEEEEEEEEEMEAGEGEEGTWIPVPSEELLIYRMTGFIGTFGCAQDTVSGRLCAELIVRSLSASASANVGTPTGVAWTKIGNGKHRKADREREAAATAQALAKKEKCAYYTSCCFGEMMKTLRLGEQAELVEGLERVCPGAREAANASCSRSAASG 420
            MSTSAITVPHVMHLPCSILLVLSSLHYTTFAVHSFVGSSFVENSSENEAVLSTVPDLKSLLPSTGCPRGRGCGLRGGLDQLETSYSFSTSPSPTSSIAYSNSRDLPNIHEGSREPVITNFAPSRVNLVSATQKTESESTATLSAALPTATTLPALLDQDSVVSTVYNQSVQLQKKGAKGKDKMCDPTPVDRRVDQLDLEGACVGSWGGFYDRIVSVTFNARTLESQALRISSFCASPCGPLFDRQVREFRNACQEGLMRMEEQEDEEEEEEEEEMEAGEGEEGTWIPVPSEELLIYRMTGFIGTFGCAQDTVSGRLCAELIVRSLSASASANVGTPTGVAWTKIGNGKHRKADREREAAATAQALAKKEKCAYYTSCCFGEMMKTLRLGEQAELVEGLERVCPGAREAANASCSRSAASG
Sbjct:    1 MSTSAITVPHVMHLPCSILLVLSSLHYTTFAVHSFVGSSFVENSSENEAVLSTVPDLKSLLPSTGCPRGRGCGLRGGLDQLETSYSFSTSPSPTSSIAYSNSRDLPNIHEGSREPVITNFAPSRVNLVSATQKTESESTATLSAALPTATTLPALLDQDSVVSTVYNQSVQLQKKGAKGKDKMCDPTPVDRRVDQLDLEGACVGSWGGFYDRIVSVTFNARTLESQALRISSFCASPCGPLFDRQVREFRNACQEGLMRMEEQEDEEEEEEEEEMEAGEGEEGTWIPVPSEELLIYRMTGFIGTFGCAQDTVSGRLCAELIVRSLSASASANVGTPTGVAWTKIGNGKHRKADREREAAATAQALAKKEKCAYYTSCCFGEMMKTLRLGEQAELVEGLERVCPGAREAANASCSRSAASG 420          
BLAST of EWM26447.1 vs. NCBI_GenBank
Match: gi|553188284|ref|XP_005854768.1| (hypothetical protein NGA_0115702 [Nannochloropsis gaditana CCMP526] >gi|553191623|ref|XP_005855416.1| hypothetical protein NGA_0115701 [Nannochloropsis gaditana CCMP526] >gi|422293647|gb|EKU20947.1| hypothetical protein NGA_0115701 [Nannochloropsis gaditana CCMP526] >gi|422294295|gb|EKU21595.1| hypothetical protein NGA_0115702 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 819.305 bits (2115), Expect = 0.000e+0
Identity = 399/409 (97.56%), Postives = 403/409 (98.53%), Query Frame = 0
Query:   12 MHLPCSILLVLSSLHYTTFAVHSFVGSSFVENSSENEAVLSTVPDLKSLLPSTGCPRGRGCGLRGGLDQLETSYSFSTSPSPTSSIAYSNSRDLPNIHEGSREPVITNFAPSRVNLVSATQKTESESTATLSAALPTATTLPALLDQDSVVSTVYNQSVQLQKKGAKGKDKMCDPTPVDRRVDQLDLEGACVGSWGGFYDRIVSVTFNARTLESQALRISSFCASPCGPLFDRQVREFRNACQEGLMRMEEQEDEEEEEEEEEMEAGEGEEGTWIPVPSEELLIYRMTGFIGTFGCAQDTVSGRLCAELIVRSLSASASANVGTPTGVAWTKIGNGKHRKADREREAAATAQALAKKEKCAYYTSCCFGEMMKTLRLGEQAELVEGLERVCPGAREAANASCSRSAASG 420
            MHLPC+ILLVLSSLHYTTFAVHSFVG+SFVENSSENEAVLSTVP LKSLL STGCPRGRGCGLRGGLDQLETSYSFSTSPSPTSSIAYSNSRDLPNIHEG REPVITN APSRVNLVSATQKTESESTATLSAALPTATTLPALLDQD VVSTV+NQSVQLQKKGAK KDKMCDPTPVDRRVDQLDLEGACVGSWGGFYDRIVSVTFNARTLESQALRISSFC+SPCGPLFDRQVREFRNACQEGLMRMEEQEDEEEEEEEEEMEAGEGEEGTWIPVPSEELLIYRMTGFIGTFGCAQDTVSGRLCAELIVRSLSASASANVGTPTGVAWTKIGNGKHRKADREREAAATAQALAKKEKCAYYTSCCFGEMMKTLRLGEQAELVEGLERVCPGAREAANASCSRSAASG
Sbjct:    1 MHLPCAILLVLSSLHYTTFAVHSFVGASFVENSSENEAVLSTVPALKSLLSSTGCPRGRGCGLRGGLDQLETSYSFSTSPSPTSSIAYSNSRDLPNIHEGRREPVITNSAPSRVNLVSATQKTESESTATLSAALPTATTLPALLDQDLVVSTVFNQSVQLQKKGAKRKDKMCDPTPVDRRVDQLDLEGACVGSWGGFYDRIVSVTFNARTLESQALRISSFCSSPCGPLFDRQVREFRNACQEGLMRMEEQEDEEEEEEEEEMEAGEGEEGTWIPVPSEELLIYRMTGFIGTFGCAQDTVSGRLCAELIVRSLSASASANVGTPTGVAWTKIGNGKHRKADREREAAATAQALAKKEKCAYYTSCCFGEMMKTLRLGEQAELVEGLERVCPGAREAANASCSRSAASG 409          
BLAST of EWM26447.1 vs. NCBI_GenBank
Match: gi|585107376|gb|EWM25587.1| (hypothetical protein Naga_100377g3 [Nannochloropsis gaditana] >gi|585107377|gb|EWM25588.1| hypothetical protein Naga_100377g3 [Nannochloropsis gaditana])

HSP 1 Score: 87.8113 bits (216), Expect = 1.891e-16
Identity = 60/235 (25.53%), Postives = 97/235 (41.28%), Query Frame = 0
Query:  187 TPVDRRVDQLDLEGACVGSWGGFYDRIVSVTFNARTLESQALRISSFCASPCGPLFDRQVREFRNACQEGLMRMEEQEDEEEEEEEEEMEAGEGEEGTWIPV-------PSEELLIYRMTGFIGTFGCAQDTVSGRLCAELIVRSLSASASANVGTPTGVAWTKIGNGKHRKADREREAAATAQALAKKEKCAYYTSCCFGEMMKTLRLGEQAELVEGLERVCPGAREAANASCS 414
            T +D  +D L  +  C   W  F D I +  FN   L  Q   + +FCA+PCGP FD+ V E+RN C                         + ++ T+ P+         +E +     GF+  FGC++ +  G+ CA+L++  ++A                      +  D E              KC YY+SCCFGE+ + +++ +       L+  CPGAR A  + C+
Sbjct:   41 TELDASLDALAEDAKCGAVWTTFSDTISTAEFNLMPLAGQVKALEAFCATPCGPSFDKAVTEWRNWC-------------------------DSKKATFTPMDDVDEDEDEDEDMPVTFDGFVAEFGCSK-SAGGQFCAQLVMAEIAA----------------------KPDDLE-------------TKCDYYSSCCFGELNRIVKVTDLESRASALDAKCPGARAALESKCA 214          
The following BLAST results are available for this feature:
BLAST of EWM26447.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585108494|gb|EWM26447.1|0.000e+0100.00hypothetical protein Naga_100144g4 [Nannochloropsi... [more]
gi|553188284|ref|XP_005854768.1|0.000e+097.56hypothetical protein NGA_0115702 [Nannochloropsis ... [more]
gi|585107376|gb|EWM25587.1|1.891e-1625.53hypothetical protein Naga_100377g3 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4235rna4235Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications