EWM26515.1, cds4158 (CDS) Nannochloropsis gaditana

Overview
NameEWM26515.1
Unique Namecds4158
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:1031576..1031642 +
Alignment locationCM002462.1:1031763..1031920 +
Alignment locationCM002462.1:1032004..1032257 +
Alignment locationCM002462.1:1032396..1032529 +

Link to JBrowse

Properties
Property NameValue
End range.
End range1032529
Protein idEWM26515.1
ProductPre-mRNA processing factor 4
Partialtrue
Orig transcript idgnl|cribi|Naga_101678g1.6012.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1031576..1031642 +
CM002462.1supercontigCM002462.1:1031763..1031920 +
CM002462.1supercontigCM002462.1:1032004..1032257 +
CM002462.1supercontigCM002462.1:1032396..1032529 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0008380RNA splicing
Vocabulary: INTERPRO
TermDefinition
IPR014906PRP4-like
IPR003648SFM
Homology
[Close]
BLAST of EWM26515.1 vs. NCBI_GenBank
Match: gi|585108588|gb|EWM26515.1| (Pre-mRNA processing factor 4, partial [Nannochloropsis gaditana])

HSP 1 Score: 387.497 bits (994), Expect = 7.323e-136
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0 
Query:    1 MEALKAELARKKQEKMAMVASSGSNGNGEEGGKKGATQAKYIRQGDVMKAEAQRRALEQAKRDKEREDARRQRIEDESAAQGSLQARLGQKAADWALNKERRKVSGEGAGGMATEGRKEEGKEGEGGNNAGGQGEGIKALRELPLQEVQKRLRALGKPITLYAEDMEERLERLMAAEAEEREKGVGTEDDFGLAGGFETVRRGG 204
            MEALKAELARKKQEKMAMVASSGSNGNGEEGGKKGATQAKYIRQGDVMKAEAQRRALEQAKRDKEREDARRQRIEDESAAQGSLQARLGQKAADWALNKERRKVSGEGAGGMATEGRKEEGKEGEGGNNAGGQGEGIKALRELPLQEVQKRLRALGKPITLYAEDMEERLERLMAAEAEEREKGVGTEDDFGLAGGFETVRRGG
Sbjct:    1 MEALKAELARKKQEKMAMVASSGSNGNGEEGGKKGATQAKYIRQGDVMKAEAQRRALEQAKRDKEREDARRQRIEDESAAQGSLQARLGQKAADWALNKERRKVSGEGAGGMATEGRKEEGKEGEGGNNAGGQGEGIKALRELPLQEVQKRLRALGKPITLYAEDMEERLERLMAAEAEEREKGVGTEDDFGLAGGFETVRRGG 204
The following BLAST results are available for this feature:
BLAST of EWM26515.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585108588|gb|EWM26515.1|7.323e-136100.00Pre-mRNA processing factor 4, partial [Nannochloro... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4168rna4168Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications