EWM26528.1, cds4141 (CDS) Nannochloropsis gaditana

Overview
NameEWM26528.1
Unique Namecds4141
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:987932..987973 +
Alignment locationCM002462.1:988279..989178 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26528.1
Producteukaryotic translation initiation factor
Orig transcript idgnl|cribi|Naga_100141g11.8375.mrna
GeneEIF2beta
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:987932..987973 +
CM002462.1supercontigCM002462.1:988279..989178 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0003743translation initiation factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: INTERPRO
TermDefinition
IPR016190Transl_init_fac_IF2/IF5_Zn-bd
IPR016189Transl_init_fac_IF2/IF5_N
IPR002735Transl_init_fac_IF2/IF5
Homology
BLAST of EWM26528.1 vs. NCBI_GenBank
Match: gi|585108606|gb|EWM26528.1| (eukaryotic translation initiation factor [Nannochloropsis gaditana])

HSP 1 Score: 635.95 bits (1639), Expect = 0.000e+0
Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 0
Query:    1 MADVTEEENPTATEPTEGDDDVDAGLFDGKKKKKKKTKEGGEESGASADLDAVFAVKKKKSSKKEKKETEDGEDNGGDDLLDEMFASKKKKSSKKEKKEKEDDGGGEDAGGAGGDEVDLDAAFAGSKKKKRSKRKDEGAEAGNAVYDSNEANYSYDELLERMQTLLQDGDPTKSVTSGRVPIKMPPITLVRIGTKKTRWDNFHDICKCMNRTLEHVFQFLVAELGTEGSIDGNNRLVLRGKYIPKGIESLLRKYIGEYVACSTCKSPNTSLSRDSVSRLFFVHCQSCGSSRSVAPIRTGFHAQTRADRRALRK 313
            MADVTEEENPTATEPTEGDDDVDAGLFDGKKKKKKKTKEGGEESGASADLDAVFAVKKKKSSKKEKKETEDGEDNGGDDLLDEMFASKKKKSSKKEKKEKEDDGGGEDAGGAGGDEVDLDAAFAGSKKKKRSKRKDEGAEAGNAVYDSNEANYSYDELLERMQTLLQDGDPTKSVTSGRVPIKMPPITLVRIGTKKTRWDNFHDICKCMNRTLEHVFQFLVAELGTEGSIDGNNRLVLRGKYIPKGIESLLRKYIGEYVACSTCKSPNTSLSRDSVSRLFFVHCQSCGSSRSVAPIRTGFHAQTRADRRALRK
Sbjct:    1 MADVTEEENPTATEPTEGDDDVDAGLFDGKKKKKKKTKEGGEESGASADLDAVFAVKKKKSSKKEKKETEDGEDNGGDDLLDEMFASKKKKSSKKEKKEKEDDGGGEDAGGAGGDEVDLDAAFAGSKKKKRSKRKDEGAEAGNAVYDSNEANYSYDELLERMQTLLQDGDPTKSVTSGRVPIKMPPITLVRIGTKKTRWDNFHDICKCMNRTLEHVFQFLVAELGTEGSIDGNNRLVLRGKYIPKGIESLLRKYIGEYVACSTCKSPNTSLSRDSVSRLFFVHCQSCGSSRSVAPIRTGFHAQTRADRRALRK 313          
BLAST of EWM26528.1 vs. NCBI_GenBank
Match: gi|298712737|emb|CBJ33336.1| (eukaryotic initiation factor 2 beta subunit [Ectocarpus siliculosus])

HSP 1 Score: 242.276 bits (617), Expect = 2.407e-76
Identity = 112/163 (68.71%), Postives = 128/163 (78.53%), Query Frame = 0
Query:  150 EANYSYDELLERMQTLLQDGDPTKSVTSGRVPIKMPPITLVRIGTKKTRWDNFHDICKCMNRTLEHVFQFLVAELGTEGSIDGNNRLVLRGKYIPKGIESLLRKYIGEYVACSTCKSPNTSLSRDSVSRLFFVHCQSCGSSRSVAPIRTGFHAQTRADRRALR 312
            E  Y+Y+ LLER+Q LL   +P     + R  I + P  L+R+GT+KT W NF DIC+ M R  EHVF F+VAELGTEGSIDGN RLVLRGKY+PK IESLLRKYI EYV C  C+SPNT+L+RD VSRLFFVHCQ CGSSRSVAPIR+GFHAQTRADRRALR
Sbjct:   69 EGRYNYETLLERIQNLLHVNNPE---LAERSRITLKPPQLMRMGTRKTLWANFQDICQLMKRQPEHVFSFVVAELGTEGSIDGNQRLVLRGKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDPVSRLFFVHCQDCGSSRSVAPIRSGFHAQTRADRRALR 228          
BLAST of EWM26528.1 vs. NCBI_GenBank
Match: gi|676381369|ref|XP_009033963.1| (hypothetical protein AURANDRAFT_14493, partial [Aureococcus anophagefferens] >gi|323455747|gb|EGB11615.1| hypothetical protein AURANDRAFT_14493, partial [Aureococcus anophagefferens])

HSP 1 Score: 227.254 bits (578), Expect = 1.524e-71
Identity = 107/157 (68.15%), Postives = 123/157 (78.34%), Query Frame = 0
Query:  153 YSYDELLERMQTLLQDGDPTKSVTSGRVPIKMPPITLVRIGTKKTRWDNFHDICKCMNRTLEHVFQFLVAELGTEGSIDGNNRLVLRGKYIPKGIESLLRKYIGEYVACSTCKSPNTSLSRDSVSRLFFVHCQSCGSSRSVAPIRTGFHAQTRADRR 309
            YSY ELL+R+  +LQ  +P  S         M P  L+R+GTKKT W NF +ICK M+R+ EHVFQF +AELGTEGSIDG  RLV+RGKY+PK IESLLRKYI EYV C  C+SP+TSL+RDSVSRLFF+HCQ CGSSRSVAPIR GFHAQTRADRR
Sbjct:    1 YSYKELLDRVVGILQANNPELSEKRRHT---MKPPQLMRVGTKKTLWVNFQEICKMMHRSPEHVFQFFMAELGTEGSIDGTQRLVIRGKYVPKYIESLLRKYIVEYVTCQMCRSPSTSLTRDSVSRLFFLHCQDCGSSRSVAPIRAGFHAQTRADRR 154          
BLAST of EWM26528.1 vs. NCBI_GenBank
Match: gi|695431130|ref|XP_009530606.1| (hypothetical protein PHYSODRAFT_259181, partial [Phytophthora sojae] >gi|348673358|gb|EGZ13177.1| hypothetical protein PHYSODRAFT_259181, partial [Phytophthora sojae])

HSP 1 Score: 219.55 bits (558), Expect = 1.550e-68
Identity = 104/159 (65.41%), Postives = 124/159 (77.99%), Query Frame = 0
Query:  153 YSY-DELLERMQTLLQDGDPTKSVTSGRVPIKMPPITLVRIGTKKTRWDNFHDICKCMNRTLEHVFQFLVAELGTEGSIDGNNRLVLRGKYIPKGIESLLRKYIGEYVACSTCKSPNTSLSRDSVSRLFFVHCQSCGSSRSVAPIRTGFHAQTRADRRA 310
            YSY DELL R+   L + +P     + R    M P  L+R+GTKKT W NF +IC+ M+R+ EHV QF +AELGTEGSIDGN RLV+RG+Y+PK IESLLRKYI EYV+C  C+SPNT+L+RDSVSRL+FVHCQ CGSSRSVA IR+GFHA TRADRRA
Sbjct:    1 YSYKDELLARIMAKLHENNPE---LTDRKRHTMKPPQLMRVGTKKTLWVNFQEICQMMHRSPEHVLQFTLAELGTEGSIDGNQRLVIRGRYVPKYIESLLRKYITEYVSCQMCRSPNTTLTRDSVSRLYFVHCQDCGSSRSVAAIRSGFHAATRADRRA 156          
BLAST of EWM26528.1 vs. NCBI_GenBank
Match: gi|1214691625|gb|OWZ06483.1| (Eukaryotic translation initiation factor 2 subunit beta [Phytophthora megakarya])

HSP 1 Score: 213.001 bits (541), Expect = 8.428e-65
Identity = 100/161 (62.11%), Postives = 122/161 (75.78%), Query Frame = 0
Query:  142 GNAVYDSNEANYSY-DELLERMQTLLQDGDPTKSVTSGRVPIKMPPITLVRIGTKKTRWDNFHDICKCMNRTLEHVFQFLVAELGTEGSIDGNNRLVLRGKYIPKGIESLLRKYIGEYVACSTCKSPNTSLSRDSVSRLFFVHCQSCGSSRSVAPIRTGFH 301
            GN+V   + A YSY DELL R+   L + +P     + R    M P  L+R+GTKKT W NF +IC+ M+R+ EHV QF +AELGTEGSIDGN RLV+RG+Y+PK IESLLRKYI EYV+C  C+SPNT+L+RDSVSRL+FVHCQ CGSSRSVA IR+GFH
Sbjct:   62 GNSVLVQDPATYSYKDELLARIMAKLHENNPE---LTDRKRHTMKPPQLMRVGTKKTLWVNFQEICQMMHRSPEHVLQFTLAELGTEGSIDGNQRLVIRGRYVPKYIESLLRKYITEYVSCQMCRSPNTTLTRDSVSRLYFVHCQDCGSSRSVAAIRSGFH 219          
BLAST of EWM26528.1 vs. NCBI_GenBank
Match: gi|695431125|ref|XP_009530605.1| (hypothetical protein PHYSODRAFT_346938 [Phytophthora sojae] >gi|348673357|gb|EGZ13176.1| hypothetical protein PHYSODRAFT_346938 [Phytophthora sojae])

HSP 1 Score: 211.46 bits (537), Expect = 3.798e-64
Identity = 99/160 (61.88%), Postives = 121/160 (75.62%), Query Frame = 0
Query:  143 NAVYDSNEANYSY-DELLERMQTLLQDGDPTKSVTSGRVPIKMPPITLVRIGTKKTRWDNFHDICKCMNRTLEHVFQFLVAELGTEGSIDGNNRLVLRGKYIPKGIESLLRKYIGEYVACSTCKSPNTSLSRDSVSRLFFVHCQSCGSSRSVAPIRTGFH 301
            N+V   + A YSY DELL R+   L + +P     + R    M P  L+R+GTKKT W NF +IC+ M+R+ EHV QF +AELGTEGSIDGN RLV+RG+Y+PK IESLLRKYI EYV+C  C+SPNT+L+RDSVSRL+FVHCQ CGSSRSVA IR+GFH
Sbjct:   65 NSVLVQDPATYSYKDELLARIMAKLHENNPE---LTDRKRHTMKPPQLMRVGTKKTLWVNFQEICQMMHRSPEHVLQFTLAELGTEGSIDGNQRLVIRGRYVPKYIESLLRKYITEYVSCQMCRSPNTTLTRDSVSRLYFVHCQDCGSSRSVAAIRSGFH 221          
BLAST of EWM26528.1 vs. NCBI_GenBank
Match: gi|669157888|ref|XP_008614506.1| (translation initiation factor 2 subunit 2 [Saprolegnia diclina VS20] >gi|530733862|gb|EQC32104.1| translation initiation factor 2 subunit 2 [Saprolegnia diclina VS20])

HSP 1 Score: 210.305 bits (534), Expect = 7.471e-64
Identity = 98/167 (58.68%), Postives = 123/167 (73.65%), Query Frame = 0
Query:  138 GAEAGNAVYDSN---EANYSYDELLERMQTLLQDGDPTKSVTSGRVPIKMPPITLVRIGTKKTRWDNFHDICKCMNRTLEHVFQFLVAELGTEGSIDGNNRLVLRGKYIPKGIESLLRKYIGEYVACSTCKSPNTSLSRDSVSRLFFVHCQSCGSSRSVAPIRTGFH 301
              EA  AV D++    A+Y+Y+E+L+R+   L + +P     S R    M P  L+R+GTKKT W NF +ICK M+R  EHV QF ++ELGTEGSIDG+ RLV+RG+Y+PK IESLLRKYI EYV C  C+SPNT+L+RD+VSRL FVHCQ CGSSRSVA IR+GFH
Sbjct:   53 STEAAPAVVDASIEDPASYTYEEMLDRVMNKLHELNPE---LSNRTKHTMKPPQLMRVGTKKTLWVNFQEICKMMHRNPEHVLQFTLSELGTEGSIDGSQRLVIRGRYVPKYIESLLRKYITEYVTCQMCRSPNTTLTRDNVSRLHFVHCQECGSSRSVAAIRSGFH 216          
BLAST of EWM26528.1 vs. NCBI_GenBank
Match: gi|301098840|ref|XP_002898512.1| (eukaryotic translation initiation factor 2 subunit beta [Phytophthora infestans T30-4] >gi|262104937|gb|EEY62989.1| eukaryotic translation initiation factor 2 subunit beta [Phytophthora infestans T30-4])

HSP 1 Score: 208.764 bits (530), Expect = 3.283e-63
Identity = 98/160 (61.25%), Postives = 121/160 (75.62%), Query Frame = 0
Query:  143 NAVYDSNEANYSY-DELLERMQTLLQDGDPTKSVTSGRVPIKMPPITLVRIGTKKTRWDNFHDICKCMNRTLEHVFQFLVAELGTEGSIDGNNRLVLRGKYIPKGIESLLRKYIGEYVACSTCKSPNTSLSRDSVSRLFFVHCQSCGSSRSVAPIRTGFH 301
            ++V   + A YSY DELL R+   L + +P     + R    M P  L+R+GTKKT W NF +IC+ M+R+ EHV QF +AELGTEGSIDGN RLV+RG+Y+PK IESLLRKYI EYV+C  C+SPNT+L+RDSVSRL+FVHCQ CGSSRSVA IR+GFH
Sbjct:   65 SSVLVQDPATYSYKDELLARIMAKLHENNPE---LTDRKRHTMKPPQLMRVGTKKTLWVNFQEICQMMHRSPEHVLQFTLAELGTEGSIDGNQRLVIRGRYVPKYIESLLRKYITEYVSCQMCRSPNTTLTRDSVSRLYFVHCQDCGSSRSVAAIRSGFH 221          
BLAST of EWM26528.1 vs. NCBI_GenBank
Match: gi|870764480|gb|KMS65186.1| (hypothetical protein BVRB_038540, partial [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 204.527 bits (519), Expect = 1.682e-62
Identity = 91/163 (55.83%), Postives = 124/163 (76.07%), Query Frame = 0
Query:  146 YDSNEANYSYDELLERMQTLLQDGDPTKSVTSGRVPIKMPPITLVRIGTKKTRWDNFHDICKCMNRTLEHVFQFLVAELGTEGSIDGNNRLVLRGKYIPKGIESLLRKYIGEYVACSTCKSPNTSLSRDSVSRLFFVHCQSCGSSRSVAPIRTGFHAQTRADR 308
            +D  + +Y Y E+L+R+ +LL++ +P     S R    MPP  +VRIG++KT W N   IC  +NR +EH+  F++AELGTEGS+DGN RLV++G+Y+PK IESLL+KYI EYV CS CK+P T+LSRDS++RL+F+ C+ CGSSRSVAPI++GFHA  RADR
Sbjct:    5 WDGTDRDYGYIEMLDRIFSLLREKNPN---LSERKRHTMPPPQMVRIGSRKTMWANIAQICDLLNRNMEHMISFIMAELGTEGSVDGNQRLVIKGRYLPKQIESLLKKYIKEYVECSMCKNPETTLSRDSLTRLYFIKCEMCGSSRSVAPIKSGFHATLRADR 164          
BLAST of EWM26528.1 vs. NCBI_GenBank
Match: gi|698801622|ref|XP_009833840.1| (hypothetical protein H257_09344 [Aphanomyces astaci] >gi|574111432|gb|ETV76928.1| hypothetical protein H257_09344 [Aphanomyces astaci])

HSP 1 Score: 205.297 bits (521), Expect = 1.186e-61
Identity = 94/166 (56.63%), Postives = 124/166 (74.70%), Query Frame = 0
Query:  148 SNEANYSYDELLERMQTLLQDGDPTKSVTSGRVPIKMPPITLVRIGTKKTRWDNFHDICKCMNRTLEHVFQFLVAELGTEGSIDGNNRLVLRGKYIPKGIESLLRKYIGEYVACSTCKSPNTSLSRDSVSRLFFVHCQSCGSSRSVAPIRTGFHAQTRADRRALRK 313
            S    Y+Y+++L+R+   L + +P   +   +  I  PP  L+R+GTKKT W NF +ICK M+R  EHV QF ++ELGTEG++DG  RL++RG+Y+PK IESLLRKYI EYV C  C+SPNT+L+RD+V+RL FV+CQ C SSRSVA IR+GFHA TRADRRA +K
Sbjct:   79 STTCAYTYEDMLDRIMNKLHENNP--DLADRKKAIIKPP-QLMRVGTKKTLWVNFQEICKMMHRNPEHVLQFTLSELGTEGNLDGTQRLIIRGRYVPKYIESLLRKYITEYVTCQMCRSPNTTLTRDNVTRLHFVNCQECESSRSVAVIRSGFHATTRADRRAAKK 241          
The following BLAST results are available for this feature:
BLAST of EWM26528.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108606|gb|EWM26528.1|0.000e+0100.00eukaryotic translation initiation factor [Nannochl... [more]
gi|298712737|emb|CBJ33336.1|2.407e-7668.71eukaryotic initiation factor 2 beta subunit [Ectoc... [more]
gi|676381369|ref|XP_009033963.1|1.524e-7168.15hypothetical protein AURANDRAFT_14493, partial [Au... [more]
gi|695431130|ref|XP_009530606.1|1.550e-6865.41hypothetical protein PHYSODRAFT_259181, partial [P... [more]
gi|1214691625|gb|OWZ06483.1|8.428e-6562.11Eukaryotic translation initiation factor 2 subunit... [more]
gi|695431125|ref|XP_009530605.1|3.798e-6461.88hypothetical protein PHYSODRAFT_346938 [Phytophtho... [more]
gi|669157888|ref|XP_008614506.1|7.471e-6458.68translation initiation factor 2 subunit 2 [Saprole... [more]
gi|301098840|ref|XP_002898512.1|3.283e-6361.25eukaryotic translation initiation factor 2 subunit... [more]
gi|870764480|gb|KMS65186.1|1.682e-6255.83hypothetical protein BVRB_038540, partial [Beta vu... [more]
gi|698801622|ref|XP_009833840.1|1.186e-6156.63hypothetical protein H257_09344 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4151rna4151Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications