EWM26550.1, cds4110 (CDS) Nannochloropsis gaditana

Overview
NameEWM26550.1
Unique Namecds4110
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:909528..909688 +
Alignment locationCM002462.1:909940..909991 +
Alignment locationCM002462.1:910092..911135 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26550.1
Productpre-rrna-processing protein esf2
Orig transcript idgnl|cribi|Naga_100084g19.1558.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:909528..909688 +
CM002462.1supercontigCM002462.1:909940..909991 +
CM002462.1supercontigCM002462.1:910092..911135 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
Homology
BLAST of EWM26550.1 vs. NCBI_GenBank
Match: gi|585108635|gb|EWM26550.1| (pre-rrna-processing protein esf2 [Nannochloropsis gaditana])

HSP 1 Score: 845.114 bits (2182), Expect = 0.000e+0
Identity = 418/418 (100.00%), Postives = 418/418 (100.00%), Query Frame = 0
Query:    1 MLRKMIGDGKLLNVALLKQLDMRVHEEEDKLMFKTLSFAGRKEKKYKRLSQCFQCCQEFVLYDQLCSFFLLIKRKNHSSTQIFDAGTERAGRKAINLRLGAVSWMVKKAKLRHDKPEKGGGDEEIHGPGNVEGINNNMPITTERPSSSSLAGPAGPKHDKTERLKREARQYRDEIARRGVVYLSSLPPYMKPAKVKHLLEKMAPVTRLYMVEEDVTIRKRRIKGGGNKKKKYVEGWVEFQDKRMAKEVAGALNGSLVGGKKHNFYHDDMWVMKYLRGFKWSHLTEKLAYERRVREQKLRMEMLQAKKENAAFVGLVEKKKELEGMEERRRKEGKEGRRRDDEVGEVGEGRETRKDLRVLRRFRQVAPLRDGGERGVAAREGAEGLTGEGLESGGKKRRRGEGMDKELLKAVFQEARPK 418
            MLRKMIGDGKLLNVALLKQLDMRVHEEEDKLMFKTLSFAGRKEKKYKRLSQCFQCCQEFVLYDQLCSFFLLIKRKNHSSTQIFDAGTERAGRKAINLRLGAVSWMVKKAKLRHDKPEKGGGDEEIHGPGNVEGINNNMPITTERPSSSSLAGPAGPKHDKTERLKREARQYRDEIARRGVVYLSSLPPYMKPAKVKHLLEKMAPVTRLYMVEEDVTIRKRRIKGGGNKKKKYVEGWVEFQDKRMAKEVAGALNGSLVGGKKHNFYHDDMWVMKYLRGFKWSHLTEKLAYERRVREQKLRMEMLQAKKENAAFVGLVEKKKELEGMEERRRKEGKEGRRRDDEVGEVGEGRETRKDLRVLRRFRQVAPLRDGGERGVAAREGAEGLTGEGLESGGKKRRRGEGMDKELLKAVFQEARPK
Sbjct:    1 MLRKMIGDGKLLNVALLKQLDMRVHEEEDKLMFKTLSFAGRKEKKYKRLSQCFQCCQEFVLYDQLCSFFLLIKRKNHSSTQIFDAGTERAGRKAINLRLGAVSWMVKKAKLRHDKPEKGGGDEEIHGPGNVEGINNNMPITTERPSSSSLAGPAGPKHDKTERLKREARQYRDEIARRGVVYLSSLPPYMKPAKVKHLLEKMAPVTRLYMVEEDVTIRKRRIKGGGNKKKKYVEGWVEFQDKRMAKEVAGALNGSLVGGKKHNFYHDDMWVMKYLRGFKWSHLTEKLAYERRVREQKLRMEMLQAKKENAAFVGLVEKKKELEGMEERRRKEGKEGRRRDDEVGEVGEGRETRKDLRVLRRFRQVAPLRDGGERGVAAREGAEGLTGEGLESGGKKRRRGEGMDKELLKAVFQEARPK 418          
BLAST of EWM26550.1 vs. NCBI_GenBank
Match: gi|953486978|emb|CEG49040.1| (pre-rrna-processing protein esf2 [Plasmopara halstedii])

HSP 1 Score: 210.305 bits (534), Expect = 2.636e-62
Identity = 103/222 (46.40%), Postives = 150/222 (67.57%), Query Frame = 0
Query:  147 SSSLAGP-AGPKHDKTERLKREARQYRDEIARRGVVYLSSLPPYMKPAKVKHLLEKMAPVTRLYMVEEDVTIRKRRIKGGGNKKKKYVEGWVEFQDKRMAKEVAGALNGSLVGGKKHNFYHDDMWVMKYLRGFKWSHLTEKLAYERRVREQKLRMEMLQAKKENAAFVGLVEKKKELEGMEERRRKEGKEGRRRDDEVGEVGEGRETRKDLRVLRRFRQVAP 367
            SS +A P AG   +K         Q++++  RRGVVY++ +PP+MKP K++HLL K   + R+Y+V ED  + K+R+  GGN++ KY EGW+EF+DK++AK VA  LN + +GG+K ++YHDDMW +KYL+GFKW HLTEK+AYE R+R+QKLRME+ QAKKEN  ++  VE+ K+LE MEER+ ++ ++    +D + +V             R F Q AP
Sbjct:    6 SSDVAKPLAGLSREKM-------MQFKEKTERRGVVYIARVPPFMKPEKLRHLLGKYGELNRIYLVPEDKVLHKKRVSAGGNRRMKYTEGWIEFEDKKVAKRVAKMLNTTQIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEVYLERVEQSKQLEKMEERKSEKNRDQNATNDAMQQVR------------RTFHQKAP 208          
BLAST of EWM26550.1 vs. NCBI_GenBank
Match: gi|567968619|gb|ETK93746.1| (hypothetical protein L915_03120 [Phytophthora parasitica] >gi|567997032|gb|ETL47124.1| hypothetical protein L916_03091 [Phytophthora parasitica] >gi|570334582|gb|ETO82530.1| hypothetical protein F444_03307 [Phytophthora parasitica P1976] >gi|570958687|gb|ETP23666.1| hypothetical protein F441_03226 [Phytophthora parasitica CJ01A1] >gi|570994591|gb|ETP51681.1| hypothetical protein F442_03221 [Phytophthora parasitica P10297])

HSP 1 Score: 209.149 bits (531), Expect = 7.523e-62
Identity = 93/190 (48.95%), Postives = 139/190 (73.16%), Query Frame = 0
Query:  140 ITTERPSSSSLAGPAGPKHDKTERLKREARQYRDEIARRGVVYLSSLPPYMKPAKVKHLLEKMAPVTRLYMVEEDVTIRKRRIKGGGNKKKKYVEGWVEFQDKRMAKEVAGALNGSLVGGKKHNFYHDDMWVMKYLRGFKWSHLTEKLAYERRVREQKLRMEMLQAKKENAAFVGLVEKKKELEGMEERR 329
            +   +P++S+     G   +K E       Q++++  RRGVVY++ +PP+MKP K+++LL K   + R+Y+V ED  + K+R+  GGN+++KY EGW+EF+DK++AK VA  LN +L+GG+K ++YHDDMW +KYL+GFKW HLTEK+AYE R+R+QKLRME+ QAKKEN A++  VE+ K+ E ME R+
Sbjct:    5 VDAAKPNASTANALVGLSREKME-------QFKEKAERRGVVYIARVPPFMKPEKLRYLLGKYGELNRIYLVPEDKALHKKRVSSGGNRRQKYTEGWIEFEDKKVAKRVAKMLNTTLIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEAYLERVEQSKQFEKMEARK 187          
BLAST of EWM26550.1 vs. NCBI_GenBank
Match: gi|675183115|ref|XP_008900442.1| (hypothetical protein PPTG_07825 [Phytophthora parasitica INRA-310] >gi|568099459|gb|ETN14173.1| hypothetical protein PPTG_07825 [Phytophthora parasitica INRA-310] >gi|970629592|gb|KUF76808.1| Pre-rRNA-processing protein ESF2 [Phytophthora nicotianae])

HSP 1 Score: 208.379 bits (529), Expect = 1.648e-61
Identity = 92/190 (48.42%), Postives = 139/190 (73.16%), Query Frame = 0
Query:  140 ITTERPSSSSLAGPAGPKHDKTERLKREARQYRDEIARRGVVYLSSLPPYMKPAKVKHLLEKMAPVTRLYMVEEDVTIRKRRIKGGGNKKKKYVEGWVEFQDKRMAKEVAGALNGSLVGGKKHNFYHDDMWVMKYLRGFKWSHLTEKLAYERRVREQKLRMEMLQAKKENAAFVGLVEKKKELEGMEERR 329
            +   +P++S+     G   +K E       Q++++  RRGVVY++ +PP+MKP K+++L+ K   + R+Y+V ED  + K+R+  GGN+++KY EGW+EF+DK++AK VA  LN +L+GG+K ++YHDDMW +KYL+GFKW HLTEK+AYE R+R+QKLRME+ QAKKEN A++  VE+ K+ E ME R+
Sbjct:    5 VDAAKPNASTANALVGLSREKME-------QFKEKAERRGVVYIARVPPFMKPEKLRYLIGKYGELNRIYLVPEDKALHKKRVSSGGNRRQKYTEGWIEFEDKKVAKRVAKMLNTTLIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEAYLERVEQSKQFEKMEARK 187          
BLAST of EWM26550.1 vs. NCBI_GenBank
Match: gi|301118671|ref|XP_002907063.1| (pre-rRNA-processing protein ESF2 [Phytophthora infestans T30-4] >gi|262105575|gb|EEY63627.1| pre-rRNA-processing protein ESF2 [Phytophthora infestans T30-4])

HSP 1 Score: 207.994 bits (528), Expect = 2.701e-61
Identity = 98/228 (42.98%), Postives = 151/228 (66.23%), Query Frame = 0
Query:  140 ITTERPSSSSLAGPAGPKHDKTERLKREARQYRDEIARRGVVYLSSLPPYMKPAKVKHLLEKMAPVTRLYMVEEDVTIRKRRIKGGGNKKKKYVEGWVEFQDKRMAKEVAGALNGSLVGGKKHNFYHDDMWVMKYLRGFKWSHLTEKLAYERRVREQKLRMEMLQAKKENAAFVGLVEKKKELEGMEERRRKEGKEGRRRDDEVGEVGEGRETRKDLRVLRRFRQVAP 367
            +   +P+++++   A    +K E       Q++++  RRGVVY++ +PP+MKP K++HLL K   + R+Y+V ED  + K+R+  GGN+++KY EGW+EF++K++AK VA  LN + +GG+K ++YHDDMW +KYL+GFKW HLTEK+AYE R+R+QKLRME+ QAKKEN A++  VE+ K+ E ME R+  + ++G    D +  +             R F Q AP
Sbjct:    5 VDAAKPNAATVKALADLSREKME-------QFKEKAERRGVVYIARVPPFMKPEKLRHLLGKYGELNRIYLVPEDKALHKKRVSSGGNRRQKYTEGWIEFENKKVAKRVAKMLNTTQIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEAYLERVEQSKQFEKMEARKADKKQDGHAAKDAMQHIR------------RTFHQKAP 213          
BLAST of EWM26550.1 vs. NCBI_GenBank
Match: gi|566030984|gb|ETI53895.1| (hypothetical protein F443_03240 [Phytophthora parasitica P1569])

HSP 1 Score: 207.223 bits (526), Expect = 4.671e-61
Identity = 92/190 (48.42%), Postives = 138/190 (72.63%), Query Frame = 0
Query:  140 ITTERPSSSSLAGPAGPKHDKTERLKREARQYRDEIARRGVVYLSSLPPYMKPAKVKHLLEKMAPVTRLYMVEEDVTIRKRRIKGGGNKKKKYVEGWVEFQDKRMAKEVAGALNGSLVGGKKHNFYHDDMWVMKYLRGFKWSHLTEKLAYERRVREQKLRMEMLQAKKENAAFVGLVEKKKELEGMEERR 329
            +   +P++S+     G   +K E       Q++++  RRGVVY++ +PP+MKP K+++LL K   + R+Y+V ED  + K+R+  GGN+++KY EGW+EF+DK++AK VA  LN +L+GG+K ++YHDDMW +KYL+GFKW HLTEK+AYE  +R+QKLRME+ QAKKEN A++  VE+ K+ E ME R+
Sbjct:    5 VDAAKPNASTANALVGLSREKME-------QFKEKAERRGVVYIARVPPFMKPEKLRYLLGKYGELNRIYLVPEDKALHKKRVSSGGNRRQKYTEGWIEFEDKKVAKRVAKMLNTTLIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENHIRDQKLRMEIAQAKKENEAYLERVEQSKQFEKMEARK 187          
BLAST of EWM26550.1 vs. NCBI_GenBank
Match: gi|568056725|gb|ETM53431.1| (hypothetical protein L914_03094 [Phytophthora parasitica])

HSP 1 Score: 207.223 bits (526), Expect = 5.035e-61
Identity = 92/190 (48.42%), Postives = 138/190 (72.63%), Query Frame = 0
Query:  140 ITTERPSSSSLAGPAGPKHDKTERLKREARQYRDEIARRGVVYLSSLPPYMKPAKVKHLLEKMAPVTRLYMVEEDVTIRKRRIKGGGNKKKKYVEGWVEFQDKRMAKEVAGALNGSLVGGKKHNFYHDDMWVMKYLRGFKWSHLTEKLAYERRVREQKLRMEMLQAKKENAAFVGLVEKKKELEGMEERR 329
            +   +P++S+     G   +K E       Q++++  RRGVVY++ +PP+MKP K+++LL K   + R+Y+V ED  + K+R+  GGN+++KY EGW+EF+DK++AK VA  LN +L+GG+K ++YHDDMW +KYL+GFKW HLTEK+AYE  +R+QKLRME+ QAKKEN A++  VE+ K+ E ME R+
Sbjct:    5 VDAAKPNASTANALVGLSREKME-------QFKEKAERRGVVYIARVPPFMKPEKLRYLLGKYGELNRIYLVPEDEALHKKRVSSGGNRRQKYTEGWIEFEDKKVAKRVAKMLNTTLIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENHIRDQKLRMEIAQAKKENEAYLERVEQSKQFEKMEARK 187          
BLAST of EWM26550.1 vs. NCBI_GenBank
Match: gi|568026244|gb|ETM00237.1| (hypothetical protein L917_03020 [Phytophthora parasitica])

HSP 1 Score: 205.297 bits (521), Expect = 9.889e-61
Identity = 88/160 (55.00%), Postives = 128/160 (80.00%), Query Frame = 0
Query:  170 QYRDEIARRGVVYLSSLPPYMKPAKVKHLLEKMAPVTRLYMVEEDVTIRKRRIKGGGNKKKKYVEGWVEFQDKRMAKEVAGALNGSLVGGKKHNFYHDDMWVMKYLRGFKWSHLTEKLAYERRVREQKLRMEMLQAKKENAAFVGLVEKKKELEGMEERR 329
            Q++++  RRGVVY++ +PP+MKP K+++LL K   + R+Y+V ED  + K+R+  GGN+++KY EGW+EF+DK++AK VA  LN +L+GG+K ++YHDDMW +KYL+GFKW HLTEK+AYE R+R+QKLRME+ QAKKEN A++  VE+ K+ E ME R+
Sbjct:    3 QFKEKAERRGVVYIARVPPFMKPEKLRYLLGKYGELNRIYLVPEDKALHKKRVSSGGNRRQKYTEGWIEFEDKKVAKRVAKMLNTTLIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEAYLERVEQSKQFEKMEARK 162          
BLAST of EWM26550.1 vs. NCBI_GenBank
Match: gi|695391951|ref|XP_009520186.1| (hypothetical protein PHYSODRAFT_284998 [Phytophthora sojae] >gi|348685083|gb|EGZ24898.1| hypothetical protein PHYSODRAFT_284998 [Phytophthora sojae])

HSP 1 Score: 205.682 bits (522), Expect = 1.690e-60
Identity = 107/257 (41.63%), Postives = 161/257 (62.65%), Query Frame = 0
Query:  147 SSSLAGPAGPKHDKTERLKREAR----QYRDEIARRGVVYLSSLPPYMKPAKVKHLLEKMAPVTRLYMVEEDVTIRKRRIKGGGNKKKKYVEGWVEFQDKRMAKEVAGALNGSLVGGKKHNFYHDDMWVMKYLRGFKWSHLTEKLAYERRVREQKLRMEMLQAKKENAAFVGLVEKKKELEGMEERRRKEGKEGRRRDDEVGEVGEGRETRKDLRVLRRFRQVAPLRDGGERGVAAREGAEGLTGEGLESGGKKRRR 399
            SS+ A    PK  K + L   +R    Q++++  RRGVVY++ +PP+MKP K++ LL K   + R+Y+V ED  + K+R+  GGN+++KY EGW+EF+DK+ AK VA  LN + +GG+K ++YHDDMW +KYL+GFKW HLTEK+AYE R+R+QKLRME+ QAKKEN A++  V++ K+ E ME R+  + ++G    D + +            V R F Q AP      + +    G  GL  +  ++  K ++R
Sbjct:    2 SSTEADAPKPKAVKVKALAGLSREKMEQFKEKAERRGVVYIARVPPFMKPEKLRSLLGKYGELNRIYLVPEDKVLHKKRVSAGGNRRQKYTEGWIEFEDKKEAKRVAKMLNTTQIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEAYLERVDQSKQFEKMEARKADKKQDGDAAHDAMQQ------------VRRTFHQKAPTSSKQNQSL----GENGLLEKVFDASSKNKKR 242          
BLAST of EWM26550.1 vs. NCBI_GenBank
Match: gi|1173929272|gb|OQR82533.1| (pre-rRNA-processing protein ESF2 [Achlya hypogyna])

HSP 1 Score: 208.379 bits (529), Expect = 9.149e-60
Identity = 103/190 (54.21%), Postives = 133/190 (70.00%), Query Frame = 0
Query:  179 GVVYLSSLPPYMKPAKVKHLLEKMAPVTRLYMVEEDVTIRKRRIKGGGNKKKKYVEGWVEFQDKRMAKEVAGALNGSLVGGKKHNFYHDDMWVMKYLRGFKWSHLTEKLAYERRVREQKLRMEMLQAKKENAAFVGLVEKKKELEGMEERRRKEGKEGRRRDDEVGEVGEGRETRKDLRVLRR-FRQVAP 367
            GVVY+S +PP+MKP KV+HLL +   + R+Y+VEED T RK+R+K GGNKK  + EGW+EF  K +AK VA ALN   +GGKK  FY+DD+W +KYL+GFKW+HLTEK+AYE RVR+QKLR+E+ QA KENAAF+  VE+ K+L+ MEER++          D V   G        L  +RR FRQ AP
Sbjct:  179 GVVYMSRVPPFMKPEKVRHLLSQYGDIERIYLVEEDKTHRKKRLKAGGNKKVNFTEGWIEFSHKSVAKRVAAALNTKPMGGKKRGFYYDDIWNLKYLKGFKWAHLTEKIAYENRVRDQKLRLEIAQAAKENAAFMERVEQSKQLDKMEERKKA---------DNVAVPGA-------LDSIRRTFRQHAP 352          
The following BLAST results are available for this feature:
BLAST of EWM26550.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108635|gb|EWM26550.1|0.000e+0100.00pre-rrna-processing protein esf2 [Nannochloropsis ... [more]
gi|953486978|emb|CEG49040.1|2.636e-6246.40pre-rrna-processing protein esf2 [Plasmopara halst... [more]
gi|567968619|gb|ETK93746.1|7.523e-6248.95hypothetical protein L915_03120 [Phytophthora para... [more]
gi|675183115|ref|XP_008900442.1|1.648e-6148.42hypothetical protein PPTG_07825 [Phytophthora para... [more]
gi|301118671|ref|XP_002907063.1|2.701e-6142.98pre-rRNA-processing protein ESF2 [Phytophthora inf... [more]
gi|566030984|gb|ETI53895.1|4.671e-6148.42hypothetical protein F443_03240 [Phytophthora para... [more]
gi|568056725|gb|ETM53431.1|5.035e-6148.42hypothetical protein L914_03094 [Phytophthora para... [more]
gi|568026244|gb|ETM00237.1|9.889e-6155.00hypothetical protein L917_03020 [Phytophthora para... [more]
gi|695391951|ref|XP_009520186.1|1.690e-6041.63hypothetical protein PHYSODRAFT_284998 [Phytophtho... [more]
gi|1173929272|gb|OQR82533.1|9.149e-6054.21pre-rRNA-processing protein ESF2 [Achlya hypogyna][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4120rna4120Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications