EWM30264.1, cds411 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30264.1 vs. NCBI_GenBank
Match: gi|585112923|gb|EWM30264.1| (nadh dehydrogenase [Nannochloropsis gaditana]) HSP 1 Score: 586.26 bits (1510), Expect = 0.000e+0 Identity = 279/279 (100.00%), Postives = 279/279 (100.00%), Query Frame = 0 Query: 1 MLPAVAGRLSRSILRVPAFNKGHALTRVTGAGFHSGRARLMTNYHPTAQHKDEPGNSVKDAWDFSEENYKRVDMILHRYPTNYKAAGIIPLLDLAQRQNGGWLPVAAMDKVASIVGVVPMRVYEVATFYTMFNREKVGKYFIQLCGTTPCMVNGAEEIRATIEKHLGIKEGETSKDGLFTLREVECLGSCANAPMVQLNDDYYECLTPASTIELLEACKKGNPPKMGRWGSLPMNGQVSCEGPHGKTTLKEPAPAPGFMMRKDLDGNVDPATVKRDMHY 279 MLPAVAGRLSRSILRVPAFNKGHALTRVTGAGFHSGRARLMTNYHPTAQHKDEPGNSVKDAWDFSEENYKRVDMILHRYPTNYKAAGIIPLLDLAQRQNGGWLPVAAMDKVASIVGVVPMRVYEVATFYTMFNREKVGKYFIQLCGTTPCMVNGAEEIRATIEKHLGIKEGETSKDGLFTLREVECLGSCANAPMVQLNDDYYECLTPASTIELLEACKKGNPPKMGRWGSLPMNGQVSCEGPHGKTTLKEPAPAPGFMMRKDLDGNVDPATVKRDMHY Sbjct: 1 MLPAVAGRLSRSILRVPAFNKGHALTRVTGAGFHSGRARLMTNYHPTAQHKDEPGNSVKDAWDFSEENYKRVDMILHRYPTNYKAAGIIPLLDLAQRQNGGWLPVAAMDKVASIVGVVPMRVYEVATFYTMFNREKVGKYFIQLCGTTPCMVNGAEEIRATIEKHLGIKEGETSKDGLFTLREVECLGSCANAPMVQLNDDYYECLTPASTIELLEACKKGNPPKMGRWGSLPMNGQVSCEGPHGKTTLKEPAPAPGFMMRKDLDGNVDPATVKRDMHY 279
BLAST of EWM30264.1 vs. NCBI_GenBank
Match: gi|676380459|ref|XP_009033508.1| (hypothetical protein AURANDRAFT_59800 [Aureococcus anophagefferens] >gi|323456618|gb|EGB12485.1| hypothetical protein AURANDRAFT_59800 [Aureococcus anophagefferens]) HSP 1 Score: 357.451 bits (916), Expect = 1.033e-121 Identity = 173/257 (67.32%), Postives = 201/257 (78.21%), Query Frame = 0 Query: 24 ALTRVTGAGFHSGRA-RLMTNYHPTAQHKDEPGNSVKDAWDFSEENYKRVDMILHRYPTNYKAAGIIPLLDLAQRQNGGWLPVAAMDKVASIVGVVPMRVYEVATFYTMFNREKVGKYFIQLCGTTPCMVNGAEEIRATIEKHLGIKEGETSKDGLFTLREVECLGSCANAPMVQLNDDYYECLTPASTIELLEACKKGNPPKMGRWGSLPMNGQVSCEGPHGKTTLKEPAPAPGFMMRKDLDGNVDPATVKRDMHY 279 AL R +G G R ++N+HP AQH + N+ + +DFS +N+ R + IL +YP NYK +GIIPLLDLAQRQ+GGWLP+AAMDKVA VG PMRVYEVATFYTMFNRE+VG YFIQLCGTTPCMV G+E I+ +IE HLGIKEGETSKDGLFTLREVECLG+CANAPM+Q+NDDYYECLTP S + LLEACKKG P MGRWGSLPMNGQVSCEGP GKT+L AP P + + G+VDPA+VK M Y Sbjct: 10 ALARPSGVARAGGPGVRPLSNFHPLAQHVNTGDNTKETTFDFSPDNHLRAEHILGKYPANYKMSGIIPLLDLAQRQSGGWLPLAAMDKVAKYVGCAPMRVYEVATFYTMFNREQVGTYFIQLCGTTPCMVCGSEAIKKSIEDHLGIKEGETSKDGLFTLREVECLGACANAPMIQMNDDYYECLTPDSMVALLEACKKGEPHAMGRWGSLPMNGQVSCEGPAGKTSLAS-APGPQPVRAEGFAGDVDPASVKAHMGY 265
BLAST of EWM30264.1 vs. NCBI_GenBank
Match: gi|635368350|emb|CCI43451.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 354.755 bits (909), Expect = 1.229e-120 Identity = 173/273 (63.37%), Postives = 211/273 (77.29%), Query Frame = 0 Query: 13 ILRVPAFNKGHALTRVTGA-GFHSGRARLMTNYHPT--AQHKDEPGNSVKDAWDFSEENYKRVDMILHRYPTNYKAAGIIPLLDLAQRQNGGWLPVAAMDKVASIVGVVPMRVYEVATFYTMFNREKVGKYFIQLCGTTPCMVNGAEEIRATIEKHLGIKEGETSKDGLFTLREVECLGSCANAPMVQLNDDYYECLTPASTIELLEACKKGNPPKMGRWGSLPMNGQVSCEGPHGKTTLK-EPAPAPGFMMRKD--LDGNVDPATVKRDMHY 279 +LR+ + G + + G FH+G + P AQH+D P N+ + ++DF+ ENY RV IL RYP N+KA+ IIPLLDLAQRQ+GGWLP+AAM+KVA IV V P++VYEVATFYTMFNREKVGK+FIQLCGTTPCM+ G+EEI+ TIE+HLGIKEGET+ DG+FTLREVECLG+CANAPMVQ+NDD+YE LTP +T ELLEACK+G PPKM +WGSLPMNGQ+SCEGP GKT+L + P PGF MR D L VDP +K +M Y Sbjct: 1 MLRLLRLSSGRTIRKENGVRAFHAG------SISPAIFAQHRDTPDNTNESSFDFTTENYIRVHAILDRYPENFKASAIIPLLDLAQRQHGGWLPLAAMNKVARIVDVKPIQVYEVATFYTMFNREKVGKFFIQLCGTTPCMICGSEEIKRTIEEHLGIKEGETTSDGMFTLREVECLGACANAPMVQINDDFYENLTPETTRELLEACKEGQPPKMSKWGSLPMNGQLSCEGPQGKTSLLWDKHPPPGFRMRPDSELQPKVDPKKIKEEMLY 267
BLAST of EWM30264.1 vs. NCBI_GenBank
Match: gi|224005697|ref|XP_002291809.1| (NADH dehydrogenase [Thalassiosira pseudonana CCMP1335] >gi|220972328|gb|EED90660.1| NADH dehydrogenase [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 352.829 bits (904), Expect = 6.994e-120 Identity = 168/245 (68.57%), Postives = 195/245 (79.59%), Query Frame = 0 Query: 35 SGRARLMTNYHPTAQHKDEPGNSVKDAWDFSEENYKRVDMILHRYPTNYKAAGIIPLLDLAQRQNGGWLPVAAMDKVASIVGVVPMRVYEVATFYTMFNREKVGKYFIQLCGTTPCMVNGAEEIRATIEKHLGIKEGETSKDGLFTLREVECLGSCANAPMVQLNDDYYECLTPASTIELLEACKKGNPPKMGRWGSLPMNGQVSCEGPHGKTTLKEPAPAPGFMMRKDLDGNVDPATVKRDMHY 279 SG+ R M H + H + P N+ + +DF+EENY RV+ IL +YP NYK +GIIPLLDLAQRQ+GGWLPVAAMDKVA IVG P RVYEVA+FYTMFNR KVGKYFIQLCGTTPCM+ G+E+I+ TIEKHLGIK GET+KDG+FTL EVECLG+CANAPM+QLNDDYYECL S +ELLEACK G PP MG+WGSLPMNGQVSCEGP GKT+L E AP + + +G VDPA+VK M Y Sbjct: 20 SGQTRSMG--HAQSFHINTPDNTPETYFDFTEENYHRVNKILSKYPANYKQSGIIPLLDLAQRQHGGWLPVAAMDKVAQIVGAAPSRVYEVASFYTMFNRTKVGKYFIQLCGTTPCMICGSEDIKKTIEKHLGIKNGETTKDGMFTLLEVECLGACANAPMIQLNDDYYECLNAKSIVELLEACKAGKPPAMGKWGSLPMNGQVSCEGPLGKTSLFE-VEAPKVDVTRFKEGQVDPASVKAHMAY 261
BLAST of EWM30264.1 vs. NCBI_GenBank
Match: gi|698784781|ref|XP_009825434.1| (hypothetical protein H257_03156 [Aphanomyces astaci] >gi|574119937|gb|ETV85416.1| hypothetical protein H257_03156 [Aphanomyces astaci]) HSP 1 Score: 350.903 bits (899), Expect = 3.624e-119 Identity = 169/253 (66.80%), Postives = 200/253 (79.05%), Query Frame = 0 Query: 30 GAGFHSGRARLMTNYHPTAQHKDEPGNSVKDAWDFSEENYKRVDMILHRYPTNYKAAGIIPLLDLAQRQNGGWLPVAAMDKVASIVGVVPMRVYEVATFYTMFNREKVGKYFIQLCGTTPCMVNGAEEIRATIEKHLGIKEGETSKDGLFTLREVECLGSCANAPMVQLNDDYYECLTPASTIELLEACKKGNPPKMGRWGSLPMNGQVSCEGPHGKTTLK-EPAPAPGFMMRKDLD--GNVDPATVKRDMHY 279 A +G R M+ +QH+D P N+ + ++DFSE NY +V IL RYP NYKA+ IIPLLDLAQRQ+GGWLP+AAM+KVA IV V PM+VYEVATFYTMFNREKVGKYFIQLCGTTPCM+ G+EEI+ IE HLGIKEGET+ D LFTLREVECLG+C+NAPMVQ+NDD+YE LTP +T +LL+ACKK PP M +WGSLPMNGQ+SCEGP GKT+LK + PAPGF MR D D VDP T+K +M Y Sbjct: 13 SAAAAAGPVRFMS--AGISQHRDTPDNTSETSFDFSESNYVKVHAILSRYPENYKASAIIPLLDLAQRQHGGWLPLAAMNKVARIVDVKPMQVYEVATFYTMFNREKVGKYFIQLCGTTPCMICGSEEIKNVIEDHLGIKEGETTADDLFTLREVECLGACSNAPMVQINDDFYENLTPETTRQLLDACKKNQPPPMNKWGSLPMNGQLSCEGPQGKTSLKWDKHPAPGFRMRPDADLVPKVDPKTIKDEMLY 263
BLAST of EWM30264.1 vs. NCBI_GenBank
Match: gi|1173960666|gb|OQS06772.1| (NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Thraustotheca clavata]) HSP 1 Score: 350.132 bits (897), Expect = 6.133e-119 Identity = 162/234 (69.23%), Postives = 192/234 (82.05%), Query Frame = 0 Query: 48 AQHKDEPGNSVKDAWDFSEENYKRVDMILHRYPTNYKAAGIIPLLDLAQRQNGGWLPVAAMDKVASIVGVVPMRVYEVATFYTMFNREKVGKYFIQLCGTTPCMVNGAEEIRATIEKHLGIKEGETSKDGLFTLREVECLGSCANAPMVQLNDDYYECLTPASTIELLEACKKGNPPKMGRWGSLPMNGQVSCEGPHGKTTLKEPAPAPGFMMR--KDLDGNVDPATVKRDMHY 279 +QH+D P N+ + ++DF+ ENY++V IL RYP NYKA+ IIPLLDLAQRQ+GGWLP+AAM+KVA I V P++VYEVATFYTMFNREKVGKYFIQLCGTTPCM+ G+EEI+ TIE HLGIKEGET+ D +FTLREVECLG+CANAPMVQ+NDD+YE LTP +T ELL+ACK+ PP M +WGSLPMNGQ+SCEGP GKTTLK P GF MR DL+ VDP +K DM Y Sbjct: 25 SQHRDTPDNTKETSFDFTAENYEKVHAILSRYPENYKASAIIPLLDLAQRQHGGWLPLAAMNKVARITEVKPIQVYEVATFYTMFNREKVGKYFIQLCGTTPCMICGSEEIKKTIEDHLGIKEGETTNDNMFTLREVECLGACANAPMVQINDDFYENLTPQATRELLDACKRDQPPPMSKWGSLPMNGQLSCEGPQGKTTLKWEHPPAGFKMRPDSDLEPKVDPKKIKEDMLY 258
BLAST of EWM30264.1 vs. NCBI_GenBank
Match: gi|813109560|ref|XP_012194612.1| (hypothetical protein SPRG_01020 [Saprolegnia parasitica CBS 223.65] >gi|641541195|gb|KDO34958.1| hypothetical protein SPRG_01020 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 349.747 bits (896), Expect = 8.995e-119 Identity = 165/234 (70.51%), Postives = 190/234 (81.20%), Query Frame = 0 Query: 48 AQHKDEPGNSVKDAWDFSEENYKRVDMILHRYPTNYKAAGIIPLLDLAQRQNGGWLPVAAMDKVASIVGVVPMRVYEVATFYTMFNREKVGKYFIQLCGTTPCMVNGAEEIRATIEKHLGIKEGETSKDGLFTLREVECLGSCANAPMVQLNDDYYECLTPASTIELLEACKKGNPPKMGRWGSLPMNGQVSCEGPHGKTTLKEPAPAPGFMMRKDLD--GNVDPATVKRDMHY 279 +QH+D P N+ + +DFSEENY +V IL RYP NYKA+ IIPLLDLAQRQ+GGWLP+AAM+KVA I V P++VYEVATFYTMFNREKVGKYFIQLCGTTPCM+ G+EEI+ TIE HLGIKEGET+ D LFTLREVECLG+CANAPMVQ+NDD+YE LTP +T ELL+ACK G P M +WGSLPMNGQ+SCEGP GKTTLK P GF MR D D VDP T+K +M Y Sbjct: 25 SQHRDTPDNTKETPFDFSEENYVKVHAILSRYPENYKASAIIPLLDLAQRQHGGWLPLAAMNKVARITEVKPIQVYEVATFYTMFNREKVGKYFIQLCGTTPCMICGSEEIKKTIESHLGIKEGETTADELFTLREVECLGACANAPMVQINDDFYENLTPQTTRELLDACKAGKAPAMNKWGSLPMNGQLSCEGPQGKTTLKWEHPPAGFKMRPDSDLVPKVDPKTIKEEMLY 258
BLAST of EWM30264.1 vs. NCBI_GenBank
Match: gi|570324936|gb|ETO72884.1| (hypothetical protein F444_11155 [Phytophthora parasitica P1976]) HSP 1 Score: 348.977 bits (894), Expect = 2.580e-118 Identity = 174/274 (63.50%), Postives = 203/274 (74.09%), Query Frame = 0 Query: 9 LSRSILRVPAFNKGHALTRVTGAGFHSGRARLMTNYHPTAQHKDEPGNSVKDAWDFSEENYKRVDMILHRYPTNYKAAGIIPLLDLAQRQNGGWLPVAAMDKVASIVGVVPMRVYEVATFYTMFNREKVGKYFIQLCGTTPCMVNGAEEIRATIEKHLGIKEGETSKDGLFTLREVECLGSCANAPMVQLNDDYYECLTPASTIELLEACKKGNPPKMGRWGSLPMNGQVSCEGPHGKTTLK-EPAPAPGFMMRKD--LDGNVDPATVKRDMHY 279 LSRS+ + A + V AGFHS T QH+D N+ +DF+ ENY+RV IL RYP NYK + IIPLLDLAQRQ+GGWLP+AAM+KVA IV P++VYEVATFYTMFNREKVGKYFIQLCGTTPCM+ G+EEI+ TIE HLGIKEGET++DG FTLREVECLG+C+NAPMVQ+NDD+YE LTP +T ELL+ACKK PP M +WGSLPMNGQ+SCEGP GKTTLK + P PGF MR D L VDP +K M Y Sbjct: 2 LSRSVRALRASATQLSARPVAAAGFHSSN----TVGSSFVQHRDTEDNNADTPFDFTPENYERVHAILDRYPENYKTSAIIPLLDLAQRQHGGWLPLAAMNKVARIVDAKPIQVYEVATFYTMFNREKVGKYFIQLCGTTPCMICGSEEIKKTIENHLGIKEGETTEDGKFTLREVECLGACSNAPMVQINDDFYENLTPETTRELLDACKKDVPPPMNKWGSLPMNGQLSCEGPQGKTTLKWDKVPGPGFRMRPDDELKPKVDPKDIKEAMLY 271
BLAST of EWM30264.1 vs. NCBI_GenBank
Match: gi|675196341|ref|XP_008907055.1| (hypothetical protein PPTG_13082 [Phytophthora parasitica INRA-310] >gi|566021322|gb|ETI44233.1| hypothetical protein F443_11080 [Phytophthora parasitica P1569] >gi|567958624|gb|ETK84211.1| hypothetical protein L915_10802 [Phytophthora parasitica] >gi|567987375|gb|ETL37681.1| hypothetical protein L916_10693 [Phytophthora parasitica] >gi|568016658|gb|ETL90835.1| hypothetical protein L917_10592 [Phytophthora parasitica] >gi|568092969|gb|ETN07770.1| hypothetical protein PPTG_13082 [Phytophthora parasitica INRA-310] >gi|570948800|gb|ETP14057.1| hypothetical protein F441_10993 [Phytophthora parasitica CJ01A1] >gi|970645659|gb|KUF86067.1| NADH dehydrogenase flavoprotein 2 [Phytophthora nicotianae] >gi|970655050|gb|KUF93269.1| endoplasmic reticulum-Golgi intermediate compartment protein 3 [Phytophthora nicotianae]) HSP 1 Score: 348.977 bits (894), Expect = 2.637e-118 Identity = 174/274 (63.50%), Postives = 203/274 (74.09%), Query Frame = 0 Query: 9 LSRSILRVPAFNKGHALTRVTGAGFHSGRARLMTNYHPTAQHKDEPGNSVKDAWDFSEENYKRVDMILHRYPTNYKAAGIIPLLDLAQRQNGGWLPVAAMDKVASIVGVVPMRVYEVATFYTMFNREKVGKYFIQLCGTTPCMVNGAEEIRATIEKHLGIKEGETSKDGLFTLREVECLGSCANAPMVQLNDDYYECLTPASTIELLEACKKGNPPKMGRWGSLPMNGQVSCEGPHGKTTLK-EPAPAPGFMMRKD--LDGNVDPATVKRDMHY 279 LSRS+ + A + V AGFHS T QH+D N+ +DF+ ENY+RV IL RYP NYK + IIPLLDLAQRQ+GGWLP+AAM+KVA IV P++VYEVATFYTMFNREKVGKYFIQLCGTTPCM+ G+EEI+ TIE HLGIKEGET++DG FTLREVECLG+C+NAPMVQ+NDD+YE LTP +T ELL+ACKK PP M +WGSLPMNGQ+SCEGP GKTTLK + P PGF MR D L VDP +K M Y Sbjct: 2 LSRSVRALRASAAQLSARPVAAAGFHSSN----TVGSSFVQHRDTEDNNADTPFDFTPENYERVHAILDRYPENYKTSAIIPLLDLAQRQHGGWLPLAAMNKVARIVDAKPIQVYEVATFYTMFNREKVGKYFIQLCGTTPCMICGSEEIKKTIENHLGIKEGETTEDGKFTLREVECLGACSNAPMVQINDDFYENLTPETTRELLDACKKDVPPPMNKWGSLPMNGQLSCEGPQGKTTLKWDKVPGPGFRMRPDDELKPKVDPKDIKEAMLY 271
BLAST of EWM30264.1 vs. NCBI_GenBank
Match: gi|669138904|ref|XP_008605020.1| (NADH dehydrogenase (ubiquinone) flavoprotein 2 [Saprolegnia diclina VS20] >gi|530743064|gb|EQC41306.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Saprolegnia diclina VS20]) HSP 1 Score: 348.591 bits (893), Expect = 2.869e-118 Identity = 165/234 (70.51%), Postives = 190/234 (81.20%), Query Frame = 0 Query: 48 AQHKDEPGNSVKDAWDFSEENYKRVDMILHRYPTNYKAAGIIPLLDLAQRQNGGWLPVAAMDKVASIVGVVPMRVYEVATFYTMFNREKVGKYFIQLCGTTPCMVNGAEEIRATIEKHLGIKEGETSKDGLFTLREVECLGSCANAPMVQLNDDYYECLTPASTIELLEACKKGNPPKMGRWGSLPMNGQVSCEGPHGKTTLKEPAPAPGFMMRKDLD--GNVDPATVKRDMHY 279 +QH+D P N+ + +DFSEENY +V IL RYP NYKA+ IIPLLDLAQRQ+GGWLP+AAM+KVA I V P++VYEVATFYTMFNREKVGKYFIQLCGTTPCM+ G+EEI+ TIE HLGIKEGET+ D LFTLREVECLG+CANAPMVQ+NDD+YE LTP +T ELL+ACK G P M +WGSLPMNGQ+SCEGP GKTTLK P GF MR D D VDP T+K +M Y Sbjct: 25 SQHRDTPDNTKETPFDFSEENYVKVHAILSRYPENYKASAIIPLLDLAQRQHGGWLPLAAMNKVARITEVKPIQVYEVATFYTMFNREKVGKYFIQLCGTTPCMICGSEEIKKTIESHLGIKEGETTADDLFTLREVECLGACANAPMVQINDDFYENLTPQTTRELLDACKAGKAPVMNKWGSLPMNGQLSCEGPQGKTTLKWEHPPAGFKMRPDSDLVPKVDPKTIKEEMLY 258 The following BLAST results are available for this feature:
BLAST of EWM30264.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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