EWM26570.1, cds4103 (CDS) Nannochloropsis gaditana

Overview
NameEWM26570.1
Unique Namecds4103
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:883059..883401 +
Alignment locationCM002462.1:883638..884437 +
Alignment locationCM002462.1:884488..885270 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26570.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100421g2.10771.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:883059..883401 +
CM002462.1supercontigCM002462.1:883638..884437 +
CM002462.1supercontigCM002462.1:884488..885270 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM26570.1 vs. NCBI_GenBank
Match: gi|585108657|gb|EWM26570.1| (hypothetical protein Naga_100421g2 [Nannochloropsis gaditana])

HSP 1 Score: 1275.77 bits (3300), Expect = 0.000e+0
Identity = 641/641 (100.00%), Postives = 641/641 (100.00%), Query Frame = 0
Query:    1 MNVDRGYTPTVEESVLPKMIKPIDASDSGQPSLSPPHHSPLSAASPTRFPLPPLTLKPLARSVSNPVITASSNAHRMSLVPRVPLRKGKWTPEEEMYAHYIIDNFNKGLISLTRGTTLRSYLSERLNCDPMRVTKKFSGTSCIGKSIFCPCEATPDNLEASKRVSSRLAELEAAFKSKVDAPSVFHLPRHPTAPPTQPSGRRQSPAGNGLPPASVPATGSELPRRASSSSLDGLRKGTEANVTDPSLALLPAHAPGLLNGSGQAGPGQIAPLEPSLSSPEGSHCLPPPFLLVAPRPASTCNRSARPRPRPVLPRSRCPPGIRPRICPWPCTGQRRRRKTRRRKGSRTEWHPPCCCPPRLGEREGQGGRGKGGNRGADTRADRGRNYPEFGWSNDGEGGRRPIPCLTDDHAAGDLLVNFFASVHRNHGGDAEGGAGPWPPGEGKGGTGERGGEEKGNGRVLDGGTLPPAPSSVSRTADSLSVAATGTAVLAAASTSAAEEEATMAPGGSFCGKSEESSSAAASPLTPSCLSGAHPSPASSTSASLPSLSTPDADPGHQGGGYSVADAPGMEPTSTVKREGEACGLAMREEKSGEGERQTPAALVWGQEGGRAGEREGFEAGLLDREEGPADPAKRQKMINSC 641
            MNVDRGYTPTVEESVLPKMIKPIDASDSGQPSLSPPHHSPLSAASPTRFPLPPLTLKPLARSVSNPVITASSNAHRMSLVPRVPLRKGKWTPEEEMYAHYIIDNFNKGLISLTRGTTLRSYLSERLNCDPMRVTKKFSGTSCIGKSIFCPCEATPDNLEASKRVSSRLAELEAAFKSKVDAPSVFHLPRHPTAPPTQPSGRRQSPAGNGLPPASVPATGSELPRRASSSSLDGLRKGTEANVTDPSLALLPAHAPGLLNGSGQAGPGQIAPLEPSLSSPEGSHCLPPPFLLVAPRPASTCNRSARPRPRPVLPRSRCPPGIRPRICPWPCTGQRRRRKTRRRKGSRTEWHPPCCCPPRLGEREGQGGRGKGGNRGADTRADRGRNYPEFGWSNDGEGGRRPIPCLTDDHAAGDLLVNFFASVHRNHGGDAEGGAGPWPPGEGKGGTGERGGEEKGNGRVLDGGTLPPAPSSVSRTADSLSVAATGTAVLAAASTSAAEEEATMAPGGSFCGKSEESSSAAASPLTPSCLSGAHPSPASSTSASLPSLSTPDADPGHQGGGYSVADAPGMEPTSTVKREGEACGLAMREEKSGEGERQTPAALVWGQEGGRAGEREGFEAGLLDREEGPADPAKRQKMINSC
Sbjct:    1 MNVDRGYTPTVEESVLPKMIKPIDASDSGQPSLSPPHHSPLSAASPTRFPLPPLTLKPLARSVSNPVITASSNAHRMSLVPRVPLRKGKWTPEEEMYAHYIIDNFNKGLISLTRGTTLRSYLSERLNCDPMRVTKKFSGTSCIGKSIFCPCEATPDNLEASKRVSSRLAELEAAFKSKVDAPSVFHLPRHPTAPPTQPSGRRQSPAGNGLPPASVPATGSELPRRASSSSLDGLRKGTEANVTDPSLALLPAHAPGLLNGSGQAGPGQIAPLEPSLSSPEGSHCLPPPFLLVAPRPASTCNRSARPRPRPVLPRSRCPPGIRPRICPWPCTGQRRRRKTRRRKGSRTEWHPPCCCPPRLGEREGQGGRGKGGNRGADTRADRGRNYPEFGWSNDGEGGRRPIPCLTDDHAAGDLLVNFFASVHRNHGGDAEGGAGPWPPGEGKGGTGERGGEEKGNGRVLDGGTLPPAPSSVSRTADSLSVAATGTAVLAAASTSAAEEEATMAPGGSFCGKSEESSSAAASPLTPSCLSGAHPSPASSTSASLPSLSTPDADPGHQGGGYSVADAPGMEPTSTVKREGEACGLAMREEKSGEGERQTPAALVWGQEGGRAGEREGFEAGLLDREEGPADPAKRQKMINSC 641          
BLAST of EWM26570.1 vs. NCBI_GenBank
Match: gi|299116879|emb|CBN74989.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 133.65 bits (335), Expect = 7.459e-30
Identity = 61/103 (59.22%), Postives = 77/103 (74.76%), Query Frame = 0
Query:   79 LVPRVPLRKGKWTPEEEMYAHYIIDNFNKGLISLTRGTTLRSYLSERLNCDPMRVTKKFSGTSCIGKSIFCPCEATPDNLEASKRVSSRLAELEAAFKSKVDA 181
            L PR P+RKGKWTPEEE+Y   II++FNKGL+ L  GTTLRSYLSE+LNCDPMR+TKKF+G SCIGK +F P E TP+NL  + R    L E+   F  ++++
Sbjct:  247 LDPRAPVRKGKWTPEEEVYTTKIINDFNKGLLPLAPGTTLRSYLSEKLNCDPMRITKKFAGASCIGKRVFMPVERTPENLIETHRSRRELEEMARKFHIRLES 349          
BLAST of EWM26570.1 vs. NCBI_GenBank
Match: gi|298707207|emb|CBJ29954.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 108.227 bits (269), Expect = 2.671e-24
Identity = 48/95 (50.53%), Postives = 69/95 (72.63%), Query Frame = 0
Query:   86 RKGKWTPEEEMYAHYIIDNFNKGLISLTRGTTLRSYLSERLNCDPMRVTKKFSGTSCIGKSIFCPCEATPDNLEASKRVSSRLAELEAAFKSKVD 180
            RKGKWT EEE     II  F+ G++ L  GTTLR+YL+++L+CDPMR+TKKF+GT+C+GK ++  CE T    E +K+    LAELEA F+++++
Sbjct:    9 RKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFQARLE 103          
BLAST of EWM26570.1 vs. NCBI_GenBank
Match: gi|1214688871|gb|OWZ04650.1| (hypothetical protein PHMEG_00023412, partial [Phytophthora megakarya])

HSP 1 Score: 108.612 bits (270), Expect = 6.345e-23
Identity = 49/91 (53.85%), Postives = 62/91 (68.13%), Query Frame = 0
Query:   85 LRKGKWTPEEEMYAHYIIDNFNKGLISLTRGTTLRSYLSERLNCDPMRVTKKFSGTSCIGKSIFCPCEATPDNLEASKRVSSRLAELEAAF 175
            LRKGKWT EE  YA  + + F +GL+ L RGT LR YLS++LNC+PMR+TKKF+G  CIGK +F PC  TP++     +    L  LEAAF
Sbjct:  165 LRKGKWTEEESRYASQLTNYFKEGLLPLERGTMLRLYLSQKLNCEPMRITKKFTGGECIGKQVFRPCSPTPESRVKIMQAQLELVTLEAAF 255          
BLAST of EWM26570.1 vs. NCBI_GenBank
Match: gi|299117483|emb|CBN73986.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 108.612 bits (270), Expect = 3.214e-22
Identity = 51/100 (51.00%), Postives = 69/100 (69.00%), Query Frame = 0
Query:   85 LRKGKWTPEEEMYAHYIIDNFNKGLISLTRGTTLRSYLSERLNCDPMRVTKKFSGTSCIGKSIF-----CPCEATPDNLEASKRVSSRLAELEAAFKSKV 179
            LR+GKWTPEEE YA+ +I  F  GL+ LT GTTLR++LS  LNCDPMR++KKF G++CIGK +F        +++P + EA  +  + LAELE  F  +V
Sbjct:  116 LRRGKWTPEEEKYANRLIQEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFVGSNCIGKQVFRRQQGVDEDSSPLSEEAMDKSRAELAELERKFLERV 215          
BLAST of EWM26570.1 vs. NCBI_GenBank
Match: gi|953486150|emb|CEG50328.1| (hypothetical protein PHALS_08047 [Plasmopara halstedii])

HSP 1 Score: 108.997 bits (271), Expect = 5.239e-22
Identity = 49/95 (51.58%), Postives = 63/95 (66.32%), Query Frame = 0
Query:   85 LRKGKWTPEEEMYAHYIIDNFNKGLISLTRGTTLRSYLSERLNCDPMRVTKKFSGTSCIGKSIFCPCEATPDNLEASKRVSSRLAELEAAFKSKV 179
            LRKGKWT EE  YA  +   F KGL+ + RGT LR YLS++LNC+PMR+TKKF+G  CIGK +F PC  TP++     +    L  LEAAF  ++
Sbjct:  130 LRKGKWTEEESRYAAQLTKYFKKGLLPIERGTMLRLYLSQKLNCEPMRITKKFTGGECIGKQVFRPCSLTPESRLRIMQAQVELVALEAAFLKRL 224          
BLAST of EWM26570.1 vs. NCBI_GenBank
Match: gi|1210526797|dbj|GAX14445.1| (hypothetical protein FisN_11Hh096 [Fistulifera solaris])

HSP 1 Score: 108.997 bits (271), Expect = 5.894e-22
Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 0
Query:   85 LRKGKWTPEEEMYAHYIIDNFNKGLISLTRGTTLRSYLSERLNCDPMRVTKKFSGTSCIGKSIFCPCEATPDNLEASKRVSSRLAELEAAFKSKVDA 181
            LR+GKWT EEE Y   +I +FN G +    GTTLR+YLSE+L CDPMR+TKKF+G +CIGK +F P   +P+N+    +  + L  LE  +  ++++
Sbjct:  157 LRRGKWTAEEEAYVARVIQDFNSGFLDAPAGTTLRTYLSEKLQCDPMRITKKFTGDACIGKRVFHPAVRSPNNVSTIDKAQAELLHLEKRWHRRLES 253          
BLAST of EWM26570.1 vs. NCBI_GenBank
Match: gi|223994807|ref|XP_002287087.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220978402|gb|EED96728.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 111.309 bits (277), Expect = 7.217e-22
Identity = 52/100 (52.00%), Postives = 69/100 (69.00%), Query Frame = 0
Query:   82 RVPLRKGKWTPEEEMYAHYIIDNFNKGLISLTRGTTLRSYLSERLNCDPMRVTKKFSGTSCIGKSIFCPCEATPDNLEASKRVSSR--LAELEAAFKSKV 179
            R PLR+GKWT EEE YA  +I  F  GL+ LT GTTLR++LS+ LNCDPMR++KKF G++CIGK +F    A  +NL  ++   +R  L+ELE  F  +V
Sbjct:  113 RAPLRRGKWTAEEEAYASRLIQEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRRRGADVNNLTPAQIQQTRLELSELEKRFLDRV 212          
BLAST of EWM26570.1 vs. NCBI_GenBank
Match: gi|970635775|gb|KUF80595.1| (hypothetical protein AM587_10014009 [Phytophthora nicotianae] >gi|970659484|gb|KUF97118.1| hypothetical protein AM588_10009276 [Phytophthora nicotianae])

HSP 1 Score: 107.071 bits (266), Expect = 8.485e-22
Identity = 48/95 (50.53%), Postives = 64/95 (67.37%), Query Frame = 0
Query:   85 LRKGKWTPEEEMYAHYIIDNFNKGLISLTRGTTLRSYLSERLNCDPMRVTKKFSGTSCIGKSIFCPCEATPDNLEASKRVSSRLAELEAAFKSKV 179
            LRKGKWT EE  YA  + + F +GL+ + RGT LR YLS++LNC+PMR+TKKF+G  CIGK +F PC  TP++     +    L  LEAAF  ++
Sbjct:   57 LRKGKWTEEESRYAAQLTNYFKEGLLPIERGTMLRLYLSQKLNCEPMRITKKFTGGECIGKQVFRPCSPTPESRVRIMQAQLELVALEAAFIKRL 151          
BLAST of EWM26570.1 vs. NCBI_GenBank
Match: gi|695411362|ref|XP_009525453.1| (hypothetical protein PHYSODRAFT_299882 [Phytophthora sojae] >gi|348682920|gb|EGZ22736.1| hypothetical protein PHYSODRAFT_299882 [Phytophthora sojae])

HSP 1 Score: 109.383 bits (272), Expect = 1.154e-21
Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 0
Query:   85 LRKGKWTPEEEMYAHYIIDNFNKGLISLTRGTTLRSYLSERLNCDPMRVTKKFSGTSCIGKSIFCPCEATPDNLEASKRVSSRLAELEAAFKSKV 179
            LRKGKWT EE  YA  + + F +GL+ L RGT LR YLS++LNC+PMR+TKKF+G  CIGK +F PC  TP++     +    L  LEAAF  ++
Sbjct:  189 LRKGKWTEEESRYAAQLTNYFKEGLLPLERGTMLRLYLSQKLNCEPMRITKKFTGGECIGKQVFRPCSPTPESRVRIMQAQLELVALEAAFIKRL 283          
The following BLAST results are available for this feature:
BLAST of EWM26570.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108657|gb|EWM26570.1|0.000e+0100.00hypothetical protein Naga_100421g2 [Nannochloropsi... [more]
gi|299116879|emb|CBN74989.1|7.459e-3059.22conserved unknown protein [Ectocarpus siliculosus][more]
gi|298707207|emb|CBJ29954.1|2.671e-2450.53conserved unknown protein [Ectocarpus siliculosus][more]
gi|1214688871|gb|OWZ04650.1|6.345e-2353.85hypothetical protein PHMEG_00023412, partial [Phyt... [more]
gi|299117483|emb|CBN73986.1|3.214e-2251.00conserved unknown protein [Ectocarpus siliculosus][more]
gi|953486150|emb|CEG50328.1|5.239e-2251.58hypothetical protein PHALS_08047 [Plasmopara halst... [more]
gi|1210526797|dbj|GAX14445.1|5.894e-2246.39hypothetical protein FisN_11Hh096 [Fistulifera sol... [more]
gi|223994807|ref|XP_002287087.1|7.217e-2252.00predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|970635775|gb|KUF80595.1|8.485e-2250.53hypothetical protein AM587_10014009 [Phytophthora ... [more]
gi|695411362|ref|XP_009525453.1|1.154e-2151.58hypothetical protein PHYSODRAFT_299882 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4113rna4113Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications