EWM26714.1, cds4093 (CDS) Nannochloropsis gaditana

Overview
NameEWM26714.1
Unique Namecds4093
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:857531..859354 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26714.1
Productdynein light intermediate chain
Orig transcript idgnl|cribi|Naga_100001g9.8225.mrna
GeneD1LIC
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:857531..859354 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003774motor activity
GO:0000166nucleotide binding
GO:0003777microtubule motor activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0007018microtubule-based movement
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005856cytoskeleton
GO:0005868cytoplasmic dynein complex
Vocabulary: INTERPRO
TermDefinition
IPR008467Dynein1_light_intermed_chain
IPR022780Dynein_light_int_chain
IPR027417P-loop_NTPase
Homology
[Close]
BLAST of EWM26714.1 vs. NCBI_GenBank
Match: gi|585108802|gb|EWM26714.1| (dynein light intermediate chain [Nannochloropsis gaditana])

HSP 1 Score: 1236.86 bits (3199), Expect = 0.000e+0
Identity = 607/607 (100.00%), Postives = 607/607 (100.00%), Query Frame = 0 
Query:    1 MSAGENAGVAQRETELIWGPLLAEAARSEQSNFTPGTILFLGDAAVGKTRLIDRFITSYDALERQAAATGRNFIAEEEKEDEEGQEGSGALSSHDHSLLSYAFFPAIDPVGCKAGGQSWDNGTVGRSSDCLPGRCPAGASKGLAEDDQDAGVDENEMDAGARVNVWSLSDPALKDLLHVALDDPGVRRRAASIRSEVPTDPRFDTSSLNSKSTPAQTLQRTICMIAIDLTRPWACESALERWVGVLRSVLGEKARAGCHKGEEEGEEERVRKARLVAYLSRCYQGEDMDRVWLERGELKEEDEGGGLEEPKVVFRINRMESSGGRPLSSPQPARSTPLPAGVLEENLGVPLVVVGLKADLAPVPDSYDDGLRSLFFQQYLRRVCLKYGASLVYTSASNGDNCLLLQRYLLHRLYPEHFSFLLPVQAPRALTFVPSGWDTPELVQKLLSPQAVPWPPSLTFSEIFVPPKGARAYLDRGDGGAEVCSETWEQESSERHTEITPTQAWLERLWEQQQQQRQRCPQNLGDGDCGRTMAGEADGSAGNHDAGGLREGPMGSTGKGRSTRYGNSNRSIGEANQRSEPYNAGGGADKAEIRNFFEGLLAGGGKK 607
            MSAGENAGVAQRETELIWGPLLAEAARSEQSNFTPGTILFLGDAAVGKTRLIDRFITSYDALERQAAATGRNFIAEEEKEDEEGQEGSGALSSHDHSLLSYAFFPAIDPVGCKAGGQSWDNGTVGRSSDCLPGRCPAGASKGLAEDDQDAGVDENEMDAGARVNVWSLSDPALKDLLHVALDDPGVRRRAASIRSEVPTDPRFDTSSLNSKSTPAQTLQRTICMIAIDLTRPWACESALERWVGVLRSVLGEKARAGCHKGEEEGEEERVRKARLVAYLSRCYQGEDMDRVWLERGELKEEDEGGGLEEPKVVFRINRMESSGGRPLSSPQPARSTPLPAGVLEENLGVPLVVVGLKADLAPVPDSYDDGLRSLFFQQYLRRVCLKYGASLVYTSASNGDNCLLLQRYLLHRLYPEHFSFLLPVQAPRALTFVPSGWDTPELVQKLLSPQAVPWPPSLTFSEIFVPPKGARAYLDRGDGGAEVCSETWEQESSERHTEITPTQAWLERLWEQQQQQRQRCPQNLGDGDCGRTMAGEADGSAGNHDAGGLREGPMGSTGKGRSTRYGNSNRSIGEANQRSEPYNAGGGADKAEIRNFFEGLLAGGGKK
Sbjct:    1 MSAGENAGVAQRETELIWGPLLAEAARSEQSNFTPGTILFLGDAAVGKTRLIDRFITSYDALERQAAATGRNFIAEEEKEDEEGQEGSGALSSHDHSLLSYAFFPAIDPVGCKAGGQSWDNGTVGRSSDCLPGRCPAGASKGLAEDDQDAGVDENEMDAGARVNVWSLSDPALKDLLHVALDDPGVRRRAASIRSEVPTDPRFDTSSLNSKSTPAQTLQRTICMIAIDLTRPWACESALERWVGVLRSVLGEKARAGCHKGEEEGEEERVRKARLVAYLSRCYQGEDMDRVWLERGELKEEDEGGGLEEPKVVFRINRMESSGGRPLSSPQPARSTPLPAGVLEENLGVPLVVVGLKADLAPVPDSYDDGLRSLFFQQYLRRVCLKYGASLVYTSASNGDNCLLLQRYLLHRLYPEHFSFLLPVQAPRALTFVPSGWDTPELVQKLLSPQAVPWPPSLTFSEIFVPPKGARAYLDRGDGGAEVCSETWEQESSERHTEITPTQAWLERLWEQQQQQRQRCPQNLGDGDCGRTMAGEADGSAGNHDAGGLREGPMGSTGKGRSTRYGNSNRSIGEANQRSEPYNAGGGADKAEIRNFFEGLLAGGGKK 607
[Close]
BLAST of EWM26714.1 vs. NCBI_GenBank
Match: gi|970629323|gb|KUF76608.1| (Cytoplasmic dynein 1 light intermediate chain 2 [Phytophthora nicotianae])

HSP 1 Score: 129.413 bits (324), Expect = 1.103e-28
Identity = 95/321 (29.60%), Postives = 143/321 (44.55%), Query Frame = 0 
Query:  148 QDAGVDENEMDAGARVNVWSLSDPALKDLLHVALDDPGVRRRAASIRSEVPTDPRFDTSSLNSKSTPAQTLQRTICMIAIDLTRPWACESALERWVGVLRSVLGEKARAGCHKGEEEGEEERVRKARLVAYLSRCYQGEDMDRVWLERGELKEEDEGGGLEEPKVVFRINRMESSGGRPLSSPQPARSTPLPAGVLEENLGVPLVVVGLKADLAPVPDSYDDGLRSLFFQQYLRRVCLKYGASLVYTSASNGDNCLLLQRYLLHRLYPEHFSFLLPVQ-APRALTFVPSGWDTPELVQKLLSPQAVPWPPSLTFSEIFVPP 467
            +++G D +E D  A +  WSL+D  LKDL+ +A+                                  QTLQ+T+  I +DL+RPW  +S+LE+W+  L   L E+        E   E     K  ++AY                             E+P V       + S   P+ +   + +  +  GVL +NLGVPLV+V  KADL P     ++ ++  + +  LR+  ++YGAS+V+TSA  G N   L++Y+LHR YP  F F  P Q       F+PSG+D+ ELV + L      WP    F +I   P
Sbjct:   77 KESGGDASE-DVMAHIGTWSLNDLNLKDLIKIAVK--------------------------------PQTLQKTVVAIVLDLSRPWTIKSSLEQWLSALEGQLLEQINQLA--PETRNELYGAIKQHILAY-----------------------------EDPSV-------DHSAPTPMDT---STNEFMEEGVLSKNLGVPLVIVVAKADLRP-----ENSVKMDYIEYTLRQFAIRYGASVVFTSAKTGSNVDTLRKYILHRAYPSQFKFTEPPQLVDHNSIFIPSGYDSFELVNQSLVGSQARWPTDKPFEKIVPAP 318
[Close]
BLAST of EWM26714.1 vs. NCBI_GenBank
Match: gi|675164301|ref|XP_008891035.1| (hypothetical protein PPTG_01179 [Phytophthora parasitica INRA-310] >gi|566033085|gb|ETI55996.1| hypothetical protein F443_01371 [Phytophthora parasitica P1569] >gi|567970786|gb|ETK95808.1| hypothetical protein L915_01302 [Phytophthora parasitica] >gi|567999143|gb|ETL49191.1| hypothetical protein L916_01282 [Phytophthora parasitica] >gi|568028304|gb|ETM02247.1| hypothetical protein L917_01262 [Phytophthora parasitica] >gi|568058893|gb|ETM55492.1| hypothetical protein L914_01291 [Phytophthora parasitica] >gi|568110436|gb|ETN25043.1| hypothetical protein PPTG_01179 [Phytophthora parasitica INRA-310] >gi|570336801|gb|ETO84749.1| hypothetical protein F444_01372 [Phytophthora parasitica P1976] >gi|570997449|gb|ETP53824.1| hypothetical protein F442_01309 [Phytophthora parasitica P10297] >gi|970629312|gb|KUF76599.1| Cytoplasmic dynein 1 light intermediate chain 2 [Phytophthora nicotianae])

HSP 1 Score: 129.028 bits (323), Expect = 1.322e-28
Identity = 95/321 (29.60%), Postives = 143/321 (44.55%), Query Frame = 0 
Query:  148 QDAGVDENEMDAGARVNVWSLSDPALKDLLHVALDDPGVRRRAASIRSEVPTDPRFDTSSLNSKSTPAQTLQRTICMIAIDLTRPWACESALERWVGVLRSVLGEKARAGCHKGEEEGEEERVRKARLVAYLSRCYQGEDMDRVWLERGELKEEDEGGGLEEPKVVFRINRMESSGGRPLSSPQPARSTPLPAGVLEENLGVPLVVVGLKADLAPVPDSYDDGLRSLFFQQYLRRVCLKYGASLVYTSASNGDNCLLLQRYLLHRLYPEHFSFLLPVQ-APRALTFVPSGWDTPELVQKLLSPQAVPWPPSLTFSEIFVPP 467
            +++G D +E D  A +  WSL+D  LKDL+ +A+                                  QTLQ+T+  I +DL+RPW  +S+LE+W+  L   L E+        E   E     K  ++AY                             E+P V       + S   P+ +   + +  +  GVL +NLGVPLV+V  KADL P     ++ ++  + +  LR+  ++YGAS+V+TSA  G N   L++Y+LHR YP  F F  P Q       F+PSG+D+ ELV + L      WP    F +I   P
Sbjct:   77 KESGGDASE-DVMAHIGTWSLNDLNLKDLIKIAVK--------------------------------PQTLQKTVVAIVLDLSRPWTIKSSLEQWLSALEGQLLEQINQLA--PETRNELYGAIKQHILAY-----------------------------EDPSV-------DHSAPTPMDT---STNEFMEEGVLSKNLGVPLVIVVAKADLRP-----ENSVKMDYIEYTLRQFAIRYGASVVFTSAKTGSNVDTLRKYILHRAYPSQFKFTEPPQLVDHNSIFIPSGYDSFELVNQSLVGSQARWPTDKPFEKIVPAP 318
[Close]
BLAST of EWM26714.1 vs. NCBI_GenBank
Match: gi|675164303|ref|XP_008891036.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|566033086|gb|ETI55997.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567970787|gb|ETK95809.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567999144|gb|ETL49192.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568028305|gb|ETM02248.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568058894|gb|ETM55493.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568110437|gb|ETN25044.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570336802|gb|ETO84750.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570997450|gb|ETP53825.1| hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 128.642 bits (322), Expect = 1.334e-28
Identity = 95/321 (29.60%), Postives = 143/321 (44.55%), Query Frame = 0 
Query:  148 QDAGVDENEMDAGARVNVWSLSDPALKDLLHVALDDPGVRRRAASIRSEVPTDPRFDTSSLNSKSTPAQTLQRTICMIAIDLTRPWACESALERWVGVLRSVLGEKARAGCHKGEEEGEEERVRKARLVAYLSRCYQGEDMDRVWLERGELKEEDEGGGLEEPKVVFRINRMESSGGRPLSSPQPARSTPLPAGVLEENLGVPLVVVGLKADLAPVPDSYDDGLRSLFFQQYLRRVCLKYGASLVYTSASNGDNCLLLQRYLLHRLYPEHFSFLLPVQ-APRALTFVPSGWDTPELVQKLLSPQAVPWPPSLTFSEIFVPP 467
            +++G D +E D  A +  WSL+D  LKDL+ +A+                                  QTLQ+T+  I +DL+RPW  +S+LE+W+  L   L E+        E   E     K  ++AY                             E+P V       + S   P+ +   + +  +  GVL +NLGVPLV+V  KADL P     ++ ++  + +  LR+  ++YGAS+V+TSA  G N   L++Y+LHR YP  F F  P Q       F+PSG+D+ ELV + L      WP    F +I   P
Sbjct:   77 KESGGDASE-DVMAHIGTWSLNDLNLKDLIKIAVK--------------------------------PQTLQKTVVAIVLDLSRPWTIKSSLEQWLSALEGQLLEQINQLA--PETRNELYGAIKQHILAY-----------------------------EDPSV-------DHSAPTPMDT---STNEFMEEGVLSKNLGVPLVIVVAKADLRP-----ENSVKMDYIEYTLRQFAIRYGASVVFTSAKTGSNVDTLRKYILHRAYPSQFKFTEPPQLVDHNSIFIPSGYDSFELVNQSLVGSQARWPTDKPFEKIVPAP 318
[Close]
BLAST of EWM26714.1 vs. NCBI_GenBank
Match: gi|570960833|gb|ETP25812.1| (hypothetical protein, variant [Phytophthora parasitica CJ01A1])

HSP 1 Score: 128.642 bits (322), Expect = 1.427e-28
Identity = 95/321 (29.60%), Postives = 143/321 (44.55%), Query Frame = 0 
Query:  148 QDAGVDENEMDAGARVNVWSLSDPALKDLLHVALDDPGVRRRAASIRSEVPTDPRFDTSSLNSKSTPAQTLQRTICMIAIDLTRPWACESALERWVGVLRSVLGEKARAGCHKGEEEGEEERVRKARLVAYLSRCYQGEDMDRVWLERGELKEEDEGGGLEEPKVVFRINRMESSGGRPLSSPQPARSTPLPAGVLEENLGVPLVVVGLKADLAPVPDSYDDGLRSLFFQQYLRRVCLKYGASLVYTSASNGDNCLLLQRYLLHRLYPEHFSFLLPVQ-APRALTFVPSGWDTPELVQKLLSPQAVPWPPSLTFSEIFVPP 467
            +++G D +E D  A +  WSL+D  LKDL+ +A+                                  QTLQ+T+  I +DL+RPW  +S+LE+W+  L   L E+        E   E     K  ++AY                             E+P V       + S   P+ +   + +  +  GVL +NLGVPLV+V  KADL P     ++ ++  + +  LR+  ++YGAS+V+TSA  G N   L++Y+LHR YP  F F  P Q       F+PSG+D+ ELV + L      WP    F +I   P
Sbjct:   77 KESGGDASE-DVMAHIGTWSLNDLNLKDLIKIAVK--------------------------------PQTLQKTVVAIVLDLSRPWMIKSSLEQWLSALEGQLLEQINQLA--PETRNELYGAIKQHILAY-----------------------------EDPSV-------DHSAPTPMDT---STNEFMEEGVLSKNLGVPLVIVVAKADLRP-----ENSVKMDYIEYTLRQFAIRYGASVVFTSAKTGSNVDTLRKYILHRAYPSQFKFTEPPQLVDHNSIFIPSGYDSFELVNQSLVGSQARWPTDKPFEKIVPAP 318
[Close]
BLAST of EWM26714.1 vs. NCBI_GenBank
Match: gi|570960832|gb|ETP25811.1| (hypothetical protein F441_01348 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 129.028 bits (323), Expect = 1.482e-28
Identity = 95/321 (29.60%), Postives = 143/321 (44.55%), Query Frame = 0 
Query:  148 QDAGVDENEMDAGARVNVWSLSDPALKDLLHVALDDPGVRRRAASIRSEVPTDPRFDTSSLNSKSTPAQTLQRTICMIAIDLTRPWACESALERWVGVLRSVLGEKARAGCHKGEEEGEEERVRKARLVAYLSRCYQGEDMDRVWLERGELKEEDEGGGLEEPKVVFRINRMESSGGRPLSSPQPARSTPLPAGVLEENLGVPLVVVGLKADLAPVPDSYDDGLRSLFFQQYLRRVCLKYGASLVYTSASNGDNCLLLQRYLLHRLYPEHFSFLLPVQ-APRALTFVPSGWDTPELVQKLLSPQAVPWPPSLTFSEIFVPP 467
            +++G D +E D  A +  WSL+D  LKDL+ +A+                                  QTLQ+T+  I +DL+RPW  +S+LE+W+  L   L E+        E   E     K  ++AY                             E+P V       + S   P+ +   + +  +  GVL +NLGVPLV+V  KADL P     ++ ++  + +  LR+  ++YGAS+V+TSA  G N   L++Y+LHR YP  F F  P Q       F+PSG+D+ ELV + L      WP    F +I   P
Sbjct:   77 KESGGDASE-DVMAHIGTWSLNDLNLKDLIKIAVK--------------------------------PQTLQKTVVAIVLDLSRPWMIKSSLEQWLSALEGQLLEQINQLA--PETRNELYGAIKQHILAY-----------------------------EDPSV-------DHSAPTPMDT---STNEFMEEGVLSKNLGVPLVIVVAKADLRP-----ENSVKMDYIEYTLRQFAIRYGASVVFTSAKTGSNVDTLRKYILHRAYPSQFKFTEPPQLVDHNSIFIPSGYDSFELVNQSLVGSQARWPTDKPFEKIVPAP 318
[Close]
BLAST of EWM26714.1 vs. NCBI_GenBank
Match: gi|695406325|ref|XP_009524077.1| (dynein [Phytophthora sojae] >gi|348681544|gb|EGZ21360.1| dynein [Phytophthora sojae])

HSP 1 Score: 127.487 bits (319), Expect = 4.844e-28
Identity = 96/321 (29.91%), Postives = 145/321 (45.17%), Query Frame = 0 
Query:  148 QDAGVDENEMDAGARVNVWSLSDPALKDLLHVALDDPGVRRRAASIRSEVPTDPRFDTSSLNSKSTPAQTLQRTICMIAIDLTRPWACESALERWVGVLRSVLGEKARAGCHKGEEEGEEERVRKARLVAYLSRCYQGEDMDRVWLERGELKEEDEGGGLEEPKVVFRINRMESSGGRPLSSPQPARSTPLPAGVLEENLGVPLVVVGLKADLAPVPDSYDDGLRSLFFQQYLRRVCLKYGASLVYTSASNGDNCLLLQRYLLHRLYPEHFSFLLPVQ-APRALTFVPSGWDTPELVQKLLSPQAVPWPPSLTFSEIFVPP 467
            +++G D +E D  A++  WSL+D  LKDL+ +A+                   PR              TLQ+T+  I +DL+RPW  +S+LE+W+  L   L E+        E   E     K  ++AY                             E+P V       + S   P+ +   + +  +  GVL +NLGVPLV+V  KADL P     ++ ++  + +  LR+  ++YGAS+V+TSA  G N   L++Y+LHR YP  F F  P Q       F+PSG+D+ ELV + L      WP    F +I   P
Sbjct:   67 KESGGDASE-DVMAQIGTWSLNDLNLKDLIKIAVK------------------PR--------------TLQKTVVAIVLDLSRPWTIKSSLEQWLSALEGQLLEQINQLA--PEARNELYAAIKQHILAY-----------------------------EDPTV-------DHSAPTPMDT---STNEFMEEGVLSKNLGVPLVLVVAKADLRP-----ENSVKMDYIEYTLRQFAIRYGASVVFTSAKTGSNVDTLRKYILHRAYPSQFKFTEPPQLVDHNSLFIPSGYDSFELVNQSLVGSQARWPTDKPFEKIVPAP 308
[Close]
BLAST of EWM26714.1 vs. NCBI_GenBank
Match: gi|325179618|emb|CCA14016.1| (dynein 1 light intermediate chain putative [Albugo laibachii Nc14])

HSP 1 Score: 115.161 bits (287), Expect = 8.920e-24
Identity = 92/369 (24.93%), Postives = 157/369 (42.55%), Query Frame = 0 
Query:  147 DQDAGVDENEMDAGARVNVWSLSDPALKDLLHVALDDPGVRRRAASIRSEVPTDPRFDTSSLNSKSTPAQTLQRTICMIAIDLTRPWACESALERWVGVLR-SVLGEKARAGCHKGEEEGEEERVRKARLVAYLSRCYQGEDMDRVWLERGELKEEDEGGGLEEPKVVFRINRMESSGGRPLSSPQP----ARSTPLPAGVLEENLGVPLVVVGLKADLAPVPDSYDDGLRSLFFQQYLRRVCLKYGASLVYTSASNGDNCLLLQRYLLHRLYPEHFSFL-LPVQAPRALTFVPSGWDTPELVQKLLSPQAVPWPPSLTFSEIFVPPKGARAYLDRGDGGAEVCSETWEQESSERHTEITPTQAWLERL 509
            D+   V+ +E  + A +N WSL+D  L +LL +AL                                 + TL+ ++  + +DL+ PW+ + ++E+W   L  ++L + ++    K                   S  YQ   +    L+ GE        G+               GG+P  +  P    +R+  L  G+L++NLG+P V++  K+DL P     +  L+  + +  +R   ++YGA++ YTSA    N  LLQ+Y+LHR  P  FS+   P    R   F+PSG+D+  L+ + L      W P   F +I   P  +   L++ D          +  S+    ++   +AWLERL
Sbjct:   95 DKHVAVEADE--SIAMINAWSLNDLDLHELLQIALQ--------------------------------SSTLEFSVAAVTVDLSSPWSMQKSIEKWTSALEGAILQQMSQIDPQKR------------------SSLYQS--IKNHLLDYGE-------PGM---------------GGQPSDTRGPMDSSSRNEFLEEGILDKNLGIPFVIIVTKSDLRP-----ESSLQVDYLEYSIRMFAIRYGAAVFYTSAKTESNIALLQKYILHRACPAQFSYNEAPQLIERGAIFLPSGYDSVSLINQSLVGSQPRWQPDTPFEKIIPDPSSSTFGLEKEDHS--------KSTSNISDVQVEQHEAWLERL 374
[Close]
BLAST of EWM26714.1 vs. NCBI_GenBank
Match: gi|403351394|gb|EJY75187.1| (Cytoplasmic dynein light intermediate chain (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 112.079 bits (279), Expect = 2.585e-22
Identity = 79/287 (27.53%), Postives = 137/287 (47.74%), Query Frame = 0 
Query:  204 DTSSLNSKSTPAQTLQRTICMIAIDLTRPWACESALERWVGVLRSVLGEKARAGCHKGEEEGEEERVRKARLVAYLSRCYQGEDMDRVWLERGELKEEDEGGGLEEPKVVFRINRMESSGGRPLSSPQPARSTPLPAGVLEENLGVPLVVVGLKADLAPVPDSYDDGLRSL-FFQQYLRRVCLKYGASLVYTSASNGDNCLLLQRYLLHRLYPEHFSFLLPVQAPRALTFVPSGWDTPELVQKLLSPQAVPWPPSLTFSEIFVPPKGARAYLDRGDGGAEVCSETWE 489
            D + L  +      LQ T  +I +D  +PW   +AL+RW+GVL   + +       K  +  E++++ K RL  ++    + +D +       + K  ++   L + +  F  +  + S  +           PLP GVL+ NLG+P++VV  K DL    D      ++L F Q++LR  CL Y A+L++T +    N  LL RY+LHRLY + F+    +    A+ F+P+G+D+  L++ L       +     + EI   P  A+    +G   +E+  E W+
Sbjct:  159 DKADLIKQVIKPDDLQHTCALIVLDFDQPWEMMNALQRWMGVLGETILD-----IMKLLKSSEQDKM-KDRLTRFVKNFERKDDSNENSASPSKTKPTNKDSNLLDDEEKFDDDMEDFSDLKS--------RLPLPEGVLQVNLGIPIIVVCNKIDLLLRGDKSQLLEQNLEFIQKHLRSYCLSYAATLMFTESIQQTNIELLYRYILHRLYDQEFNNKAEILQKDAI-FIPTGFDSLMLIEALCKG---AYQEGKVYEEIIKKPSVAQ----QGQNKSEITCEDWQ 423
[Close]
BLAST of EWM26714.1 vs. NCBI_GenBank
Match: gi|678333621|emb|CDW77480.1| (cytoplasmic dynein 1 light intermediate chain 2 [Stylonychia lemnae])

HSP 1 Score: 110.153 bits (274), Expect = 1.037e-21
Identity = 80/273 (29.30%), Postives = 129/273 (47.25%), Query Frame = 0 
Query:  218 LQRTICMIAIDLTRPWACESALERWVGVLRSVLGEKARAGCHKGEEEGEEERVRKARLVAYLSRCYQGEDMDRVWLERGELKEEDEGGGLEEPKVVFRINRMESSGGRPLSSPQPARSTPLPAGVLEENLGVPLVVVGLKADLAPVPD-SYDDGLRSLFFQQYLRRVCLKYGASLVYTSASNGDNCLLLQRYLLHRLYPEHFSFLLPVQAPRALTFVPSGWDTPELVQKLLSPQAVPWPPSLTFSEIFVPPKGARAYLDRGDGGAEVCSETWE 489
            LQ+T  +I +D  +PW   +AL+RW+GVL   + +  +      E++  +E++   R V    R     D D   + + +L + D     E+ K+    +  +    R           PLP GVL+ NLG+P++VV  K DL    D S    L   F Q++LR+ CL Y ASL++T  +   N  LL RY+LHRLY + F     +    ++ F+P+G+D+  L+  L       +     + E+   P  A+    +G    EV  E W+
Sbjct:  174 LQQTCALIVLDFDQPWEMMNALQRWMGVLGETILDIMKM-LKSSEQDKMKEKL--TRFVKNFERKDDSNDNDDA-INKNKLVKMDTNLLDEDEKLDDDFDDYKDLKSR----------LPLPEGVLKVNLGIPIIVVCQKIDLLLRGDKSQLLELNLEFIQKHLRQYCLSYAASLIFTEVNQLTNIELLYRYILHRLYDQEFHNKAEMHQKDSI-FIPTGFDSLMLIDALCKG---AYSEGKVYEEVIKKPSIAQ----QGQNKPEVTCEDWQ 424
The following BLAST results are available for this feature:
BLAST of EWM26714.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108802|gb|EWM26714.1|0.000e+0100.00dynein light intermediate chain [Nannochloropsis g... [more]
gi|970629323|gb|KUF76608.1|1.103e-2829.60Cytoplasmic dynein 1 light intermediate chain 2 [P... [more]
gi|675164301|ref|XP_008891035.1|1.322e-2829.60hypothetical protein PPTG_01179 [Phytophthora para... [more]
gi|675164303|ref|XP_008891036.1|1.334e-2829.60hypothetical protein, variant [Phytophthora parasi... [more]
gi|570960833|gb|ETP25812.1|1.427e-2829.60hypothetical protein, variant [Phytophthora parasi... [more]
gi|570960832|gb|ETP25811.1|1.482e-2829.60hypothetical protein F441_01348 [Phytophthora para... [more]
gi|695406325|ref|XP_009524077.1|4.844e-2829.91dynein [Phytophthora sojae] >gi|348681544|gb|EGZ21... [more]
gi|325179618|emb|CCA14016.1|8.920e-2424.93dynein 1 light intermediate chain putative [Albugo... [more]
gi|403351394|gb|EJY75187.1|2.585e-2227.53Cytoplasmic dynein light intermediate chain (macro... [more]
gi|678333621|emb|CDW77480.1|1.037e-2129.30cytoplasmic dynein 1 light intermediate chain 2 [S... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4103rna4103Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications