EWM26662.1, cds4069 (CDS) Nannochloropsis gaditana

Overview
NameEWM26662.1
Unique Namecds4069
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:806720..806825 -
Alignment locationCM002462.1:805341..806641 -

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Properties
Property NameValue
Protein idEWM26662.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g33.8173.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:806720..806825 -
CM002462.1supercontigCM002462.1:805341..806641 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM26662.1 vs. NCBI_GenBank
Match: gi|585108750|gb|EWM26662.1| (hypothetical protein Naga_100001g33 [Nannochloropsis gaditana])

HSP 1 Score: 969.148 bits (2504), Expect = 0.000e+0
Identity = 468/468 (100.00%), Postives = 468/468 (100.00%), Query Frame = 0
Query:    1 MARRSHWLYEWFFIAALGSNWLQSHAGRWGDARLQAATLKPRSLLIRDARYSASNYRRASSHRLAFHLWGKHHEHEGRALERSTVWQRFSNTTGDATNSSSTTIQQLGSFSTRKNPVFGILSQEDLALDKVEQCVCRCWGQCKPFVSTAAKALAGGTMCLFGAHYARCAVVFHTMRVTGWPAFHKAVQELFRSYSAAREVVKSEVSKVVRPGELFRAVSYELKSVHFLIKESQKKLEDGYLSRMEAMEIIRRAQIDKKRLEYEAWCLNQALDSVAALGAAIDLTRLREAGKGLYTGALACFASSSSMTVCKLSLAFDLGGILANNLSCVCATLMSRWHSKELARILPPETRRFIKLSFQIMGAIQGLLIVNTVLPKVSLRISSAALGAAWLTDAITEICDPWIQAHDGWNPMANHLPYAVLQVGLTIGGYYVQKTVYPGKIPLIVERVLSPLAFFEKRLNYLNSMFAK 468
            MARRSHWLYEWFFIAALGSNWLQSHAGRWGDARLQAATLKPRSLLIRDARYSASNYRRASSHRLAFHLWGKHHEHEGRALERSTVWQRFSNTTGDATNSSSTTIQQLGSFSTRKNPVFGILSQEDLALDKVEQCVCRCWGQCKPFVSTAAKALAGGTMCLFGAHYARCAVVFHTMRVTGWPAFHKAVQELFRSYSAAREVVKSEVSKVVRPGELFRAVSYELKSVHFLIKESQKKLEDGYLSRMEAMEIIRRAQIDKKRLEYEAWCLNQALDSVAALGAAIDLTRLREAGKGLYTGALACFASSSSMTVCKLSLAFDLGGILANNLSCVCATLMSRWHSKELARILPPETRRFIKLSFQIMGAIQGLLIVNTVLPKVSLRISSAALGAAWLTDAITEICDPWIQAHDGWNPMANHLPYAVLQVGLTIGGYYVQKTVYPGKIPLIVERVLSPLAFFEKRLNYLNSMFAK
Sbjct:    1 MARRSHWLYEWFFIAALGSNWLQSHAGRWGDARLQAATLKPRSLLIRDARYSASNYRRASSHRLAFHLWGKHHEHEGRALERSTVWQRFSNTTGDATNSSSTTIQQLGSFSTRKNPVFGILSQEDLALDKVEQCVCRCWGQCKPFVSTAAKALAGGTMCLFGAHYARCAVVFHTMRVTGWPAFHKAVQELFRSYSAAREVVKSEVSKVVRPGELFRAVSYELKSVHFLIKESQKKLEDGYLSRMEAMEIIRRAQIDKKRLEYEAWCLNQALDSVAALGAAIDLTRLREAGKGLYTGALACFASSSSMTVCKLSLAFDLGGILANNLSCVCATLMSRWHSKELARILPPETRRFIKLSFQIMGAIQGLLIVNTVLPKVSLRISSAALGAAWLTDAITEICDPWIQAHDGWNPMANHLPYAVLQVGLTIGGYYVQKTVYPGKIPLIVERVLSPLAFFEKRLNYLNSMFAK 468          
BLAST of EWM26662.1 vs. NCBI_GenBank
Match: gi|553194679|ref|XP_005856013.1| (hypothetical protein NGA_2076900 [Nannochloropsis gaditana CCMP526] >gi|422293049|gb|EKU20350.1| hypothetical protein NGA_2076900 [Nannochloropsis gaditana CCMP526] >gi|585108790|gb|EWM26702.1| hypothetical protein Naga_100001g111 [Nannochloropsis gaditana])

HSP 1 Score: 188.348 bits (477), Expect = 3.020e-50
Identity = 89/250 (35.60%), Postives = 155/250 (62.00%), Query Frame = 0
Query:  151 KALAGGTMCLFGAHYARCAVVFHTMRVTGWPAFHKAVQELFRSYSAAREVVKSEVSKVVRPGELFRAVSYELKSVHFLIKESQKKLEDGYLSRMEAMEIIRRAQIDKKRLEYEAWCLNQALDSVAALGAAIDLTRLREAGKGLYTGALACFASSSSMTVCKLSLAFDLGGILANNLSCVCATLMSRWHSKELARILPPETRRFIKLSFQIMGAIQGLLIVNTVLPKVSLRISSAALGAAWLTDAITEICD 400
            K   G +M L+G H++   V  HT+RVTG P   +A  E    Y  AR  +K E   ++   +L +AV YE++S   L+ ES +  +DG ++  EA E +R+A+++ + L  ++W LNQA  S+ A+ AAID  ++++   G+YT ALACFA++SS T+  LS+ FDL  +++ ++      +  R    E+ + LP ET++ + ++  ++  ++GL++V+ V+P+++L ISS+ALGA W+TD + ++ D
Sbjct:  143 KGCVGLSMVLYGMHFSHLVVFIHTLRVTGLPVMQRAWNEFVDMYGTARRTIKREYPNMLHTKKLLQAVHYEIQSTRKLLHESAEAAKDGKVTESEAREAVRKAKLNLRELNEKSWILNQAFSSMHAVAAAIDFVKIKDLFSGIYTSALACFATASSSTLRGLSIGFDLASLISQHIDHAVQAVAERIPRLEVLQYLPRETQKLLGMTVSLVSVLKGLIVVHFVVPRLTLVISSSALGALWVTDMLVDVMD 392          
BLAST of EWM26662.1 vs. NCBI_GenBank
Match: gi|299117435|emb|CBN73938.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 64.3142 bits (155), Expect = 1.782e-7
Identity = 70/304 (23.03%), Postives = 138/304 (45.39%), Query Frame = 0
Query:  155 GGTMCLFGAHYARCAVVFHTMRVTGWPAFHKAVQELFRSYSAAREVVKSEVSKVVRPGELFRAV-SYELKSV-HFLIKESQKKLEDGYLSRMEAMEIIRRAQIDKKRLEYEAWCLNQALDSVAALGAAIDLTRLREAGKGLYTGALACFASSSSMTVCKLSLAFDLGGILANNLSCVCATLMSRWHSK-ELARILPPETRRFIKLSFQIMGAIQGLLI----------VNTVLPKVSLRISSAALGAAWLTDAITEICDPWIQAHDGWNPMA-NHLPY-AVLQVGLTIGGYYVQKT-VYPGKIP 442
            G ++  +G  +   A      R+ G     +AV+EL   Y++AR  ++         GE  R V   +L++    +I+E ++ L DG+LS  +    +++ + +  +++ E      A  SV +L +++   + R +  G+Y   +ACF +S+  T  + +L   +G +L  ++  +   ++     + +L+     E   ++  +   MG  + + +          V  V P V+L++S    G   +TD +    +P   A      M   H P+ AV+  GLTI GYY  ++ +Y  +IP
Sbjct:   36 GLSLLFYGMAFRTFAFHVIVFRIAGMKQVQRAVRELVGKYASARRSIREAAEAAETVGE--RVVKGDDLQAARERMIEEKKRLLSDGFLSERDTTYFMKKYRAELLKIKEEQELFQSARSSVLSLRSSVGPRQARSSFNGVYNALIACFTASTIQTAGQFTLGLHIGNLLKTHVLDLFGPIIDPIGYRLDLSPYFDEEDIPYMGKA-NAMGGPRNMALNILCYSVVFAVFRVHPSVALKLSMVYYGGRVVTDYVVLFTEP---ARRKLGQMTIVHTPWSAVIHAGLTILGYYCHRSALYTAEIP 333          
The following BLAST results are available for this feature:
BLAST of EWM26662.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585108750|gb|EWM26662.1|0.000e+0100.00hypothetical protein Naga_100001g33 [Nannochlorops... [more]
gi|553194679|ref|XP_005856013.1|3.020e-5035.60hypothetical protein NGA_2076900 [Nannochloropsis ... [more]
gi|299117435|emb|CBN73938.1|1.782e-723.03expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4079rna4079Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications