EWM26721.1, cds4005 (CDS) Nannochloropsis gaditana

Overview
NameEWM26721.1
Unique Namecds4005
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:632263..632733 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26721.1
Productribosomal protein l22
Orig transcript idgnl|cribi|Naga_100001g101.8232.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:632263..632733 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR005727Ribosomal_L22_bac/chlpt-type
IPR001063Ribosomal_L22
Homology
BLAST of EWM26721.1 vs. NCBI_GenBank
Match: gi|553176705|ref|XP_005852392.1| (ribosomal protein l22 [Nannochloropsis gaditana CCMP526] >gi|422296140|gb|EKU23439.1| ribosomal protein l22 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 318.931 bits (816), Expect = 3.545e-109
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0
Query:    1 MREVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEIDFEGSLAACKNRFQRARWETRRALADKVREAREGDGARAGSGLA 156
            MREVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEIDFEGSLAACKNRFQRARWETRRALADKVREAREGDGARAGSGLA
Sbjct:   74 MREVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEIDFEGSLAACKNRFQRARWETRRALADKVREAREGDGARAGSGLA 229          
BLAST of EWM26721.1 vs. NCBI_GenBank
Match: gi|585108809|gb|EWM26721.1| (ribosomal protein l22 [Nannochloropsis gaditana])

HSP 1 Score: 315.849 bits (808), Expect = 5.123e-109
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0
Query:    1 MREVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEIDFEGSLAACKNRFQRARWETRRALADKVREAREGDGARAGSGLA 156
            MREVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEIDFEGSLAACKNRFQRARWETRRALADKVREAREGDGARAGSGLA
Sbjct:    1 MREVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEIDFEGSLAACKNRFQRARWETRRALADKVREAREGDGARAGSGLA 156          
BLAST of EWM26721.1 vs. NCBI_GenBank
Match: gi|299471395|emb|CBN79348.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 114.775 bits (286), Expect = 3.705e-29
Identity = 62/134 (46.27%), Postives = 87/134 (64.93%), Query Frame = 0
Query:    1 MREVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEIDFEGSLAACKNRFQRARWETRR 134
            +RE+ +    IR+SPW +NLL + VRGLPVVEA  QL F +K K    VAK IQNA NLA++R+ L  E+L V E FV +  + K +  MG+GR G+  R++SH+ V L+EIDF+  L A  +R +R +   R+
Sbjct:   43 LREITTGLKEIRVSPWNLNLLAKLVRGLPVVEANAQLLFCKK-KHTTTVAKAIQNALNLADMRYGLAAEELEVGEIFVTKGKVVKRLRIMGRGRAGIARRKWSHLNVTLREIDFDKQLKAAPSRNRREKLMARK 175          
BLAST of EWM26721.1 vs. NCBI_GenBank
Match: gi|325184141|emb|CCA18599.1| (conserved hypothetical protein [Albugo laibachii Nc14] >gi|325186054|emb|CCA20556.1| conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 107.842 bits (268), Expect = 1.904e-26
Identity = 56/114 (49.12%), Postives = 79/114 (69.30%), Query Frame = 0
Query:    2 REVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEIDFE 115
            R V + K  IR+SP K+  L +QVRGLPV EAL+Q+KFSRK++   +V   +QNA NLA+IR+N+ PE+L VAEAFV +    K +  MG+GR G+    +SH+V+ L+E + E
Sbjct:   61 RTVKTIKKDIRVSPRKLTYLAQQVRGLPVEEALLQMKFSRKRRAG-IVQTTVQNAVNLADIRYNIEPENLKVAEAFVTKGKYLKRLRIMGRGRSGIMHHPFSHLVIVLEEFEPE 173          
BLAST of EWM26721.1 vs. NCBI_GenBank
Match: gi|635368916|emb|CCI42950.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 107.071 bits (266), Expect = 3.104e-26
Identity = 59/134 (44.03%), Postives = 85/134 (63.43%), Query Frame = 0
Query:    2 REVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEIDFEGSLAACKNRFQRARWETRRA 135
            R V + K  IR+SP K+  L +QVRGLP  EAL+Q+KFSRK++   +V   +QNA NLA+IR+N+ PE+L ++EAFV +    K +  MG+GR G+    +SH+V+ LKE + E          QR+R   R+A
Sbjct:   62 RTVKTIKKDIRVSPRKLTYLAQQVRGLPAEEALLQMKFSRKRRAT-IVKATVQNAVNLADIRYNIEPENLKISEAFVTKGKYLKRLRIMGRGRSGIMHHPFSHLVIVLKEFEPEPK--------QRSRIAQRKA 186          
BLAST of EWM26721.1 vs. NCBI_GenBank
Match: gi|1173950849|gb|OQR98787.1| (hypothetical protein ACHHYP_07842 [Achlya hypogyna])

HSP 1 Score: 106.301 bits (264), Expect = 5.383e-26
Identity = 55/112 (49.11%), Postives = 77/112 (68.75%), Query Frame = 0
Query:    2 REVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEID 113
            R V + K  IR+SP K++LL +Q+RGLPV EAL Q+ FS K+K   +V K +QNA NLA+I + + P +L VAEAFVN+    K +  MG+GR G+K R +SH+ + LKE +
Sbjct:   47 RTVRTMKKEIRVSPRKLSLLAQQIRGLPVEEALTQMTFSPKRKAA-IVKKTVQNAINLADINYGIEPTNLKVAEAFVNKGLFLKRLKIMGRGRAGIKHRPHSHLTIVLKEFE 157          
BLAST of EWM26721.1 vs. NCBI_GenBank
Match: gi|1173944042|gb|OQR92823.1| (hypothetical protein THRCLA_08608 [Thraustotheca clavata])

HSP 1 Score: 105.916 bits (263), Expect = 8.818e-26
Identity = 53/112 (47.32%), Postives = 77/112 (68.75%), Query Frame = 0
Query:    2 REVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEID 113
            R V + K  IR+SP K+ LL +Q+RGLP  EAL+Q+++S K+K   +V K +QNA NLA+I + + P +L +AEAFVN+    K +  MG+GR G+K R +SH+ + LKE D
Sbjct:   47 RTVKTMKKEIRVSPRKLTLLAQQIRGLPAEEALVQMQYSPKRKAA-IVKKTVQNAINLADINYGIEPSNLKIAEAFVNKGLFLKRLKIMGRGRAGIKHRPHSHLTIVLKEFD 157          
BLAST of EWM26721.1 vs. NCBI_GenBank
Match: gi|669143520|ref|XP_008607322.1| (hypothetical protein SDRG_03466 [Saprolegnia diclina VS20] >gi|530741019|gb|EQC39261.1| hypothetical protein SDRG_03466 [Saprolegnia diclina VS20])

HSP 1 Score: 104.76 bits (260), Expect = 2.037e-25
Identity = 54/112 (48.21%), Postives = 75/112 (66.96%), Query Frame = 0
Query:    2 REVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEID 113
            R V + K  IR+SP K+ LL +Q+RGLP  EAL Q+ FS K+K   +V K +QNA NLA+I + + P +L VAEAFVN+    K +  MG+GR G+K R +SH+ + L+E D
Sbjct:   47 RTVRTMKKEIRVSPRKLTLLAQQIRGLPAEEALTQMHFSPKRKAA-IVKKTVQNAINLADINYGIEPSNLKVAEAFVNKGLFLKRLKIMGRGRSGIKHRPHSHLTIVLEEFD 157          
BLAST of EWM26721.1 vs. NCBI_GenBank
Match: gi|695426794|ref|XP_009529510.1| (hypothetical protein PHYSODRAFT_401882, partial [Phytophthora sojae] >gi|348675943|gb|EGZ15761.1| hypothetical protein PHYSODRAFT_401882, partial [Phytophthora sojae])

HSP 1 Score: 104.76 bits (260), Expect = 2.079e-25
Identity = 52/112 (46.43%), Postives = 74/112 (66.07%), Query Frame = 0
Query:    2 REVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEID 113
            R V + K  IR SP K+  L +Q+RGLP  EA++Q+KFS K+K   +  K +QNA NLA+I++ + PE+LMVAE FVN+    K +  MG+GR G+    Y+H+ V L+E D
Sbjct:   51 RTVKTVKRAIRASPRKLTYLAQQIRGLPANEAILQMKFSPKRKAE-IFQKTVQNAINLADIKYQIEPENLMVAECFVNKGTYLKRLRIMGRGRSGIMHHPYTHLTVVLREFD 161          
BLAST of EWM26721.1 vs. NCBI_GenBank
Match: gi|813102741|ref|XP_012193914.1| (hypothetical protein SPRG_00425 [Saprolegnia parasitica CBS 223.65] >gi|641541838|gb|KDO35583.1| hypothetical protein SPRG_00425 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 103.219 bits (256), Expect = 7.427e-25
Identity = 54/112 (48.21%), Postives = 74/112 (66.07%), Query Frame = 0
Query:    2 REVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEID 113
            R V + K  IR+SP K+ LL +Q+RGLP  EAL Q+ FS K+K   +V K +QNA NLA+I   + P +L VAEAFVN+    K +  MG+GR G+K R +SH+ + L+E D
Sbjct:   47 RTVRTMKKEIRVSPRKLTLLAQQIRGLPAEEALTQMHFSPKRKAA-IVKKTVQNAINLADINFGIEPSNLKVAEAFVNKGLFLKRLKIMGRGRSGIKHRPHSHLTIVLEEFD 157          
The following BLAST results are available for this feature:
BLAST of EWM26721.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553176705|ref|XP_005852392.1|3.545e-109100.00ribosomal protein l22 [Nannochloropsis gaditana CC... [more]
gi|585108809|gb|EWM26721.1|5.123e-109100.00ribosomal protein l22 [Nannochloropsis gaditana][more]
gi|299471395|emb|CBN79348.1|3.705e-2946.27conserved unknown protein [Ectocarpus siliculosus][more]
gi|325184141|emb|CCA18599.1|1.904e-2649.12conserved hypothetical protein [Albugo laibachii N... [more]
gi|635368916|emb|CCI42950.1|3.104e-2644.03unnamed protein product [Albugo candida][more]
gi|1173950849|gb|OQR98787.1|5.383e-2649.11hypothetical protein ACHHYP_07842 [Achlya hypogyna... [more]
gi|1173944042|gb|OQR92823.1|8.818e-2647.32hypothetical protein THRCLA_08608 [Thraustotheca c... [more]
gi|669143520|ref|XP_008607322.1|2.037e-2548.21hypothetical protein SDRG_03466 [Saprolegnia dicli... [more]
gi|695426794|ref|XP_009529510.1|2.079e-2546.43hypothetical protein PHYSODRAFT_401882, partial [P... [more]
gi|813102741|ref|XP_012193914.1|7.427e-2548.21hypothetical protein SPRG_00425 [Saprolegnia paras... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4015rna4015Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications