EWM26721.1, cds4005 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26721.1 vs. NCBI_GenBank
Match: gi|553176705|ref|XP_005852392.1| (ribosomal protein l22 [Nannochloropsis gaditana CCMP526] >gi|422296140|gb|EKU23439.1| ribosomal protein l22 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 318.931 bits (816), Expect = 3.545e-109 Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0 Query: 1 MREVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEIDFEGSLAACKNRFQRARWETRRALADKVREAREGDGARAGSGLA 156 MREVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEIDFEGSLAACKNRFQRARWETRRALADKVREAREGDGARAGSGLA Sbjct: 74 MREVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEIDFEGSLAACKNRFQRARWETRRALADKVREAREGDGARAGSGLA 229
BLAST of EWM26721.1 vs. NCBI_GenBank
Match: gi|585108809|gb|EWM26721.1| (ribosomal protein l22 [Nannochloropsis gaditana]) HSP 1 Score: 315.849 bits (808), Expect = 5.123e-109 Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0 Query: 1 MREVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEIDFEGSLAACKNRFQRARWETRRALADKVREAREGDGARAGSGLA 156 MREVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEIDFEGSLAACKNRFQRARWETRRALADKVREAREGDGARAGSGLA Sbjct: 1 MREVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEIDFEGSLAACKNRFQRARWETRRALADKVREAREGDGARAGSGLA 156
BLAST of EWM26721.1 vs. NCBI_GenBank
Match: gi|299471395|emb|CBN79348.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 114.775 bits (286), Expect = 3.705e-29 Identity = 62/134 (46.27%), Postives = 87/134 (64.93%), Query Frame = 0 Query: 1 MREVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEIDFEGSLAACKNRFQRARWETRR 134 +RE+ + IR+SPW +NLL + VRGLPVVEA QL F +K K VAK IQNA NLA++R+ L E+L V E FV + + K + MG+GR G+ R++SH+ V L+EIDF+ L A +R +R + R+ Sbjct: 43 LREITTGLKEIRVSPWNLNLLAKLVRGLPVVEANAQLLFCKK-KHTTTVAKAIQNALNLADMRYGLAAEELEVGEIFVTKGKVVKRLRIMGRGRAGIARRKWSHLNVTLREIDFDKQLKAAPSRNRREKLMARK 175
BLAST of EWM26721.1 vs. NCBI_GenBank
Match: gi|325184141|emb|CCA18599.1| (conserved hypothetical protein [Albugo laibachii Nc14] >gi|325186054|emb|CCA20556.1| conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 107.842 bits (268), Expect = 1.904e-26 Identity = 56/114 (49.12%), Postives = 79/114 (69.30%), Query Frame = 0 Query: 2 REVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEIDFE 115 R V + K IR+SP K+ L +QVRGLPV EAL+Q+KFSRK++ +V +QNA NLA+IR+N+ PE+L VAEAFV + K + MG+GR G+ +SH+V+ L+E + E Sbjct: 61 RTVKTIKKDIRVSPRKLTYLAQQVRGLPVEEALLQMKFSRKRRAG-IVQTTVQNAVNLADIRYNIEPENLKVAEAFVTKGKYLKRLRIMGRGRSGIMHHPFSHLVIVLEEFEPE 173
BLAST of EWM26721.1 vs. NCBI_GenBank
Match: gi|635368916|emb|CCI42950.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 107.071 bits (266), Expect = 3.104e-26 Identity = 59/134 (44.03%), Postives = 85/134 (63.43%), Query Frame = 0 Query: 2 REVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEIDFEGSLAACKNRFQRARWETRRA 135 R V + K IR+SP K+ L +QVRGLP EAL+Q+KFSRK++ +V +QNA NLA+IR+N+ PE+L ++EAFV + K + MG+GR G+ +SH+V+ LKE + E QR+R R+A Sbjct: 62 RTVKTIKKDIRVSPRKLTYLAQQVRGLPAEEALLQMKFSRKRRAT-IVKATVQNAVNLADIRYNIEPENLKISEAFVTKGKYLKRLRIMGRGRSGIMHHPFSHLVIVLKEFEPEPK--------QRSRIAQRKA 186
BLAST of EWM26721.1 vs. NCBI_GenBank
Match: gi|1173950849|gb|OQR98787.1| (hypothetical protein ACHHYP_07842 [Achlya hypogyna]) HSP 1 Score: 106.301 bits (264), Expect = 5.383e-26 Identity = 55/112 (49.11%), Postives = 77/112 (68.75%), Query Frame = 0 Query: 2 REVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEID 113 R V + K IR+SP K++LL +Q+RGLPV EAL Q+ FS K+K +V K +QNA NLA+I + + P +L VAEAFVN+ K + MG+GR G+K R +SH+ + LKE + Sbjct: 47 RTVRTMKKEIRVSPRKLSLLAQQIRGLPVEEALTQMTFSPKRKAA-IVKKTVQNAINLADINYGIEPTNLKVAEAFVNKGLFLKRLKIMGRGRAGIKHRPHSHLTIVLKEFE 157
BLAST of EWM26721.1 vs. NCBI_GenBank
Match: gi|1173944042|gb|OQR92823.1| (hypothetical protein THRCLA_08608 [Thraustotheca clavata]) HSP 1 Score: 105.916 bits (263), Expect = 8.818e-26 Identity = 53/112 (47.32%), Postives = 77/112 (68.75%), Query Frame = 0 Query: 2 REVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEID 113 R V + K IR+SP K+ LL +Q+RGLP EAL+Q+++S K+K +V K +QNA NLA+I + + P +L +AEAFVN+ K + MG+GR G+K R +SH+ + LKE D Sbjct: 47 RTVKTMKKEIRVSPRKLTLLAQQIRGLPAEEALVQMQYSPKRKAA-IVKKTVQNAINLADINYGIEPSNLKIAEAFVNKGLFLKRLKIMGRGRAGIKHRPHSHLTIVLKEFD 157
BLAST of EWM26721.1 vs. NCBI_GenBank
Match: gi|669143520|ref|XP_008607322.1| (hypothetical protein SDRG_03466 [Saprolegnia diclina VS20] >gi|530741019|gb|EQC39261.1| hypothetical protein SDRG_03466 [Saprolegnia diclina VS20]) HSP 1 Score: 104.76 bits (260), Expect = 2.037e-25 Identity = 54/112 (48.21%), Postives = 75/112 (66.96%), Query Frame = 0 Query: 2 REVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEID 113 R V + K IR+SP K+ LL +Q+RGLP EAL Q+ FS K+K +V K +QNA NLA+I + + P +L VAEAFVN+ K + MG+GR G+K R +SH+ + L+E D Sbjct: 47 RTVRTMKKEIRVSPRKLTLLAQQIRGLPAEEALTQMHFSPKRKAA-IVKKTVQNAINLADINYGIEPSNLKVAEAFVNKGLFLKRLKIMGRGRSGIKHRPHSHLTIVLEEFD 157
BLAST of EWM26721.1 vs. NCBI_GenBank
Match: gi|695426794|ref|XP_009529510.1| (hypothetical protein PHYSODRAFT_401882, partial [Phytophthora sojae] >gi|348675943|gb|EGZ15761.1| hypothetical protein PHYSODRAFT_401882, partial [Phytophthora sojae]) HSP 1 Score: 104.76 bits (260), Expect = 2.079e-25 Identity = 52/112 (46.43%), Postives = 74/112 (66.07%), Query Frame = 0 Query: 2 REVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEID 113 R V + K IR SP K+ L +Q+RGLP EA++Q+KFS K+K + K +QNA NLA+I++ + PE+LMVAE FVN+ K + MG+GR G+ Y+H+ V L+E D Sbjct: 51 RTVKTVKRAIRASPRKLTYLAQQIRGLPANEAILQMKFSPKRKAE-IFQKTVQNAINLADIKYQIEPENLMVAECFVNKGTYLKRLRIMGRGRSGIMHHPYTHLTVVLREFD 161
BLAST of EWM26721.1 vs. NCBI_GenBank
Match: gi|813102741|ref|XP_012193914.1| (hypothetical protein SPRG_00425 [Saprolegnia parasitica CBS 223.65] >gi|641541838|gb|KDO35583.1| hypothetical protein SPRG_00425 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 103.219 bits (256), Expect = 7.427e-25 Identity = 54/112 (48.21%), Postives = 74/112 (66.07%), Query Frame = 0 Query: 2 REVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEID 113 R V + K IR+SP K+ LL +Q+RGLP EAL Q+ FS K+K +V K +QNA NLA+I + P +L VAEAFVN+ K + MG+GR G+K R +SH+ + L+E D Sbjct: 47 RTVRTMKKEIRVSPRKLTLLAQQIRGLPAEEALTQMHFSPKRKAA-IVKKTVQNAINLADINFGIEPSNLKVAEAFVNKGLFLKRLKIMGRGRSGIKHRPHSHLTIVLEEFD 157 The following BLAST results are available for this feature:
BLAST of EWM26721.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|