EWM26728.1, cds3987 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26728.1 vs. NCBI_GenBank
Match: gi|585108816|gb|EWM26728.1| (arginine-trna-protein transferase 1 [Nannochloropsis gaditana]) HSP 1 Score: 820.076 bits (2117), Expect = 0.000e+0 Identity = 393/393 (100.00%), Postives = 393/393 (100.00%), Query Frame = 0
Query: 1 MAVLVRSNSKIMLSFGMVFLHVIMTLCCLVQVHGLHRLGCFVTSGKTGAPSASTWLASMSGDRLRMRFYRRGQMRCFLGTEESQNNDGRAQPLARPDVDDNAGGLRQDAGGPSSLATMGQRAFVITPHQHGNRHLESLLHLAGREKHKFSSALKELEHHVQLEVAEALIFNIRKHTNGGMLPSADGSSPKLSAEQRDVVIEYIPEVLQIMDRLEEHGHHHRDARVSLYATEALSYEVSTTSLVKAAPLLARIFKNIDLMLAKSPELKGGAPFIIKGMMFLNAPMPVRSVRKAKECFQTAHQIDASSPRNNYFCGVAAYLEKDYARAHKYFAEALSLAQTAALVSNARMTQGKYDAGSVCLANKEMPMDEYLHVQCRLGMDLASTQITQTSAHP 393
MAVLVRSNSKIMLSFGMVFLHVIMTLCCLVQVHGLHRLGCFVTSGKTGAPSASTWLASMSGDRLRMRFYRRGQMRCFLGTEESQNNDGRAQPLARPDVDDNAGGLRQDAGGPSSLATMGQRAFVITPHQHGNRHLESLLHLAGREKHKFSSALKELEHHVQLEVAEALIFNIRKHTNGGMLPSADGSSPKLSAEQRDVVIEYIPEVLQIMDRLEEHGHHHRDARVSLYATEALSYEVSTTSLVKAAPLLARIFKNIDLMLAKSPELKGGAPFIIKGMMFLNAPMPVRSVRKAKECFQTAHQIDASSPRNNYFCGVAAYLEKDYARAHKYFAEALSLAQTAALVSNARMTQGKYDAGSVCLANKEMPMDEYLHVQCRLGMDLASTQITQTSAHP
Sbjct: 1 MAVLVRSNSKIMLSFGMVFLHVIMTLCCLVQVHGLHRLGCFVTSGKTGAPSASTWLASMSGDRLRMRFYRRGQMRCFLGTEESQNNDGRAQPLARPDVDDNAGGLRQDAGGPSSLATMGQRAFVITPHQHGNRHLESLLHLAGREKHKFSSALKELEHHVQLEVAEALIFNIRKHTNGGMLPSADGSSPKLSAEQRDVVIEYIPEVLQIMDRLEEHGHHHRDARVSLYATEALSYEVSTTSLVKAAPLLARIFKNIDLMLAKSPELKGGAPFIIKGMMFLNAPMPVRSVRKAKECFQTAHQIDASSPRNNYFCGVAAYLEKDYARAHKYFAEALSLAQTAALVSNARMTQGKYDAGSVCLANKEMPMDEYLHVQCRLGMDLASTQITQTSAHP 393
BLAST of EWM26728.1 vs. NCBI_GenBank
Match: gi|585108706|gb|EWM26618.1| (arginine-trna-protein transferase 1-like protein [Nannochloropsis gaditana]) HSP 1 Score: 84.3445 bits (207), Expect = 1.593e-14 Identity = 59/192 (30.73%), Postives = 95/192 (49.48%), Query Frame = 0
Query: 145 EKHKFSSALKELEHHVQLEVAEALIFNIRKHTNGGMLPSADGSSPKLSAEQRDVVIEYIPEVLQIMDRLEEHGHHHRDARVSLYATEALSYEVSTTSLVKAAPLLA--RIFKNIDLMLAKSPELKGGAPFIIKGMMFLNAPMPVRSVRKAKECFQTAHQIDASSPRNNYFCGVAAYLEKDYARAHKYFAEAL 334
EK S++LK + A+A + +R TN + DG S S E R + Y E I+ L H ++AR+ + TEA +Y S+ ++KAA + +D ++++ P G PFI +G L AP P+R V KA E F++A +++ S RNN+F GV+ + + A + F A+
Sbjct: 107 EKQPNSASLK-------FKFADASVSLLRSLTNANAV-LIDGVSD--SKENRKLWKTYAFEAYDILKEL--HAQEPQNARIHVLMTEAYTYRTSSKGILKAAVTGDGLTFMRLVDQIVSRHPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAFESAWEVEPRSLRNNFFLGVSHFHAGSFEAARQAFERAV 286
BLAST of EWM26728.1 vs. NCBI_GenBank
Match: gi|553186572|ref|XP_005854443.1| (hypothetical protein NGA_0014302 [Nannochloropsis gaditana CCMP526] >gi|422294609|gb|EKU21909.1| hypothetical protein NGA_0014302 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 80.4925 bits (197), Expect = 3.407e-13 Identity = 58/192 (30.21%), Postives = 94/192 (48.96%), Query Frame = 0
Query: 145 EKHKFSSALKELEHHVQLEVAEALIFNIRKHTNGGMLPSADGSSPKLSAEQRDVVIEYIPEVLQIMDRLEEHGHHHRDARVSLYATEALSYEVSTTSLVKAAPLLA--RIFKNIDLMLAKSPELKGGAPFIIKGMMFLNAPMPVRSVRKAKECFQTAHQIDASSPRNNYFCGVAAYLEKDYARAHKYFAEAL 334
EK S++LK + A+A + +R TN + DG S S E R + E I+ L H ++AR+ + TEA +Y S+ ++KAA + +D ++++ P G PFI +G L AP P+R V KA E F++A +++ S RNN+F GV+ + + A + F A+
Sbjct: 107 EKQPNSASLK-------FKFADASVSLLRSLTNANAV-LIDGVSD--SKENRKLWKTCAFEAYDILKEL--HAQEPQNARIHVLMTEAYTYRTSSKGILKAAVTGDGLTFMRLVDQIVSRHPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAFESAWEVEPRSLRNNFFLGVSHFHAGSFEAARQAFERAV 286 The following BLAST results are available for this feature:
BLAST of EWM26728.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|