EWM26728.1, cds3987 (CDS) Nannochloropsis gaditana

Overview
NameEWM26728.1
Unique Namecds3987
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:592252..592769 -
Alignment locationCM002462.1:591850..592070 -
Alignment locationCM002462.1:591537..591700 -
Alignment locationCM002462.1:591189..591467 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26728.1
Productarginine-trna-protein transferase 1
Orig transcript idgnl|cribi|Naga_100001g122.8239.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:592252..592769 -
CM002462.1supercontigCM002462.1:591850..592070 -
CM002462.1supercontigCM002462.1:591537..591700 -
CM002462.1supercontigCM002462.1:591189..591467 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
Homology
BLAST of EWM26728.1 vs. NCBI_GenBank
Match: gi|585108816|gb|EWM26728.1| (arginine-trna-protein transferase 1 [Nannochloropsis gaditana])

HSP 1 Score: 820.076 bits (2117), Expect = 0.000e+0
Identity = 393/393 (100.00%), Postives = 393/393 (100.00%), Query Frame = 0
Query:    1 MAVLVRSNSKIMLSFGMVFLHVIMTLCCLVQVHGLHRLGCFVTSGKTGAPSASTWLASMSGDRLRMRFYRRGQMRCFLGTEESQNNDGRAQPLARPDVDDNAGGLRQDAGGPSSLATMGQRAFVITPHQHGNRHLESLLHLAGREKHKFSSALKELEHHVQLEVAEALIFNIRKHTNGGMLPSADGSSPKLSAEQRDVVIEYIPEVLQIMDRLEEHGHHHRDARVSLYATEALSYEVSTTSLVKAAPLLARIFKNIDLMLAKSPELKGGAPFIIKGMMFLNAPMPVRSVRKAKECFQTAHQIDASSPRNNYFCGVAAYLEKDYARAHKYFAEALSLAQTAALVSNARMTQGKYDAGSVCLANKEMPMDEYLHVQCRLGMDLASTQITQTSAHP 393
            MAVLVRSNSKIMLSFGMVFLHVIMTLCCLVQVHGLHRLGCFVTSGKTGAPSASTWLASMSGDRLRMRFYRRGQMRCFLGTEESQNNDGRAQPLARPDVDDNAGGLRQDAGGPSSLATMGQRAFVITPHQHGNRHLESLLHLAGREKHKFSSALKELEHHVQLEVAEALIFNIRKHTNGGMLPSADGSSPKLSAEQRDVVIEYIPEVLQIMDRLEEHGHHHRDARVSLYATEALSYEVSTTSLVKAAPLLARIFKNIDLMLAKSPELKGGAPFIIKGMMFLNAPMPVRSVRKAKECFQTAHQIDASSPRNNYFCGVAAYLEKDYARAHKYFAEALSLAQTAALVSNARMTQGKYDAGSVCLANKEMPMDEYLHVQCRLGMDLASTQITQTSAHP
Sbjct:    1 MAVLVRSNSKIMLSFGMVFLHVIMTLCCLVQVHGLHRLGCFVTSGKTGAPSASTWLASMSGDRLRMRFYRRGQMRCFLGTEESQNNDGRAQPLARPDVDDNAGGLRQDAGGPSSLATMGQRAFVITPHQHGNRHLESLLHLAGREKHKFSSALKELEHHVQLEVAEALIFNIRKHTNGGMLPSADGSSPKLSAEQRDVVIEYIPEVLQIMDRLEEHGHHHRDARVSLYATEALSYEVSTTSLVKAAPLLARIFKNIDLMLAKSPELKGGAPFIIKGMMFLNAPMPVRSVRKAKECFQTAHQIDASSPRNNYFCGVAAYLEKDYARAHKYFAEALSLAQTAALVSNARMTQGKYDAGSVCLANKEMPMDEYLHVQCRLGMDLASTQITQTSAHP 393          
BLAST of EWM26728.1 vs. NCBI_GenBank
Match: gi|585108706|gb|EWM26618.1| (arginine-trna-protein transferase 1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 84.3445 bits (207), Expect = 1.593e-14
Identity = 59/192 (30.73%), Postives = 95/192 (49.48%), Query Frame = 0
Query:  145 EKHKFSSALKELEHHVQLEVAEALIFNIRKHTNGGMLPSADGSSPKLSAEQRDVVIEYIPEVLQIMDRLEEHGHHHRDARVSLYATEALSYEVSTTSLVKAAPLLA--RIFKNIDLMLAKSPELKGGAPFIIKGMMFLNAPMPVRSVRKAKECFQTAHQIDASSPRNNYFCGVAAYLEKDYARAHKYFAEAL 334
            EK   S++LK        + A+A +  +R  TN   +   DG S   S E R +   Y  E   I+  L  H    ++AR+ +  TEA +Y  S+  ++KAA         + +D ++++ P    G PFI +G   L AP P+R V KA E F++A +++  S RNN+F GV+ +    +  A + F  A+
Sbjct:  107 EKQPNSASLK-------FKFADASVSLLRSLTNANAV-LIDGVSD--SKENRKLWKTYAFEAYDILKEL--HAQEPQNARIHVLMTEAYTYRTSSKGILKAAVTGDGLTFMRLVDQIVSRHPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAFESAWEVEPRSLRNNFFLGVSHFHAGSFEAARQAFERAV 286          
BLAST of EWM26728.1 vs. NCBI_GenBank
Match: gi|553186572|ref|XP_005854443.1| (hypothetical protein NGA_0014302 [Nannochloropsis gaditana CCMP526] >gi|422294609|gb|EKU21909.1| hypothetical protein NGA_0014302 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 80.4925 bits (197), Expect = 3.407e-13
Identity = 58/192 (30.21%), Postives = 94/192 (48.96%), Query Frame = 0
Query:  145 EKHKFSSALKELEHHVQLEVAEALIFNIRKHTNGGMLPSADGSSPKLSAEQRDVVIEYIPEVLQIMDRLEEHGHHHRDARVSLYATEALSYEVSTTSLVKAAPLLA--RIFKNIDLMLAKSPELKGGAPFIIKGMMFLNAPMPVRSVRKAKECFQTAHQIDASSPRNNYFCGVAAYLEKDYARAHKYFAEAL 334
            EK   S++LK        + A+A +  +R  TN   +   DG S   S E R +      E   I+  L  H    ++AR+ +  TEA +Y  S+  ++KAA         + +D ++++ P    G PFI +G   L AP P+R V KA E F++A +++  S RNN+F GV+ +    +  A + F  A+
Sbjct:  107 EKQPNSASLK-------FKFADASVSLLRSLTNANAV-LIDGVSD--SKENRKLWKTCAFEAYDILKEL--HAQEPQNARIHVLMTEAYTYRTSSKGILKAAVTGDGLTFMRLVDQIVSRHPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAFESAWEVEPRSLRNNFFLGVSHFHAGSFEAARQAFERAV 286          
The following BLAST results are available for this feature:
BLAST of EWM26728.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585108816|gb|EWM26728.1|0.000e+0100.00arginine-trna-protein transferase 1 [Nannochlorops... [more]
gi|585108706|gb|EWM26618.1|1.593e-1430.73arginine-trna-protein transferase 1-like protein [... [more]
gi|553186572|ref|XP_005854443.1|3.407e-1330.21hypothetical protein NGA_0014302 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3997rna3997Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications