EWM26762.1, cds3977 (CDS) Nannochloropsis gaditana

Overview
NameEWM26762.1
Unique Namecds3977
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:565608..566231 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26762.1
Productmitochondrial import inner membrane translocase subunit tim22
Orig transcript idgnl|cribi|Naga_100001g133.8273.mrna
GeneTIM22
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:565608..566231 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0016043cellular component organization
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR003397Tim17/Tim22/Tim23/PMP24
Homology
BLAST of EWM26762.1 vs. NCBI_GenBank
Match: gi|585108850|gb|EWM26762.1| (mitochondrial import inner membrane translocase subunit tim22 [Nannochloropsis gaditana])

HSP 1 Score: 419.468 bits (1077), Expect = 2.400e-148
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0
Query:    1 MSGPSHPHPPADVPTTPSAAEHKYPAAELKCSKPDLLFTSPPPFPLPFYKYVSLPQTPAGMVAVAPPNPQENCVGRSVFGAVAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVMGPH 207
            MSGPSHPHPPADVPTTPSAAEHKYPAAELKCSKPDLLFTSPPPFPLPFYKYVSLPQTPAGMVAVAPPNPQENCVGRSVFGAVAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVMGPH
Sbjct:    1 MSGPSHPHPPADVPTTPSAAEHKYPAAELKCSKPDLLFTSPPPFPLPFYKYVSLPQTPAGMVAVAPPNPQENCVGRSVFGAVAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVMGPH 207          
BLAST of EWM26762.1 vs. NCBI_GenBank
Match: gi|397633389|gb|EJK70956.1| (hypothetical protein THAOC_07645 [Thalassiosira oceanica])

HSP 1 Score: 162.155 bits (409), Expect = 2.375e-46
Identity = 76/168 (45.24%), Postives = 109/168 (64.88%), Query Frame = 0
Query:   43 PFPLPFYKYVSLPQTPAGMVAVAPPN---PQENCVGRSVFGAVAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVMGPH 207
            P+P P+ +  + P       A  PPN     E+C  ++  G + G  +G++MG+FLGA+ DM+P + II G+E PQAP  EQ+R   RAT ++  +W R F  +T +F G +C+VEK+RGKHD +N+V+SGC  GAA+ AKQGPQA+  GC GFA FS +++  MG H
Sbjct:   85 PYPQPWARANASP-------AELPPNFDWLSESCGSKAAIGVIGGGAMGLVMGVFLGALTDMTPPVTIIEGKEVPQAPLKEQMRTTLRATADKSLYWCRQFAFITGVFGGSECLVEKYRGKHDVWNSVVSGCITGAAMQAKQGPQASAAGCGGFAVFSLVIDSFMGTH 245          
BLAST of EWM26762.1 vs. NCBI_GenBank
Match: gi|298713991|emb|CBJ27223.1| (Mitochondrial import inner membrane translocase subunit TIM22 homolog [Ectocarpus siliculosus])

HSP 1 Score: 155.606 bits (392), Expect = 1.795e-44
Identity = 81/161 (50.31%), Postives = 103/161 (63.98%), Query Frame = 0
Query:   46 LPFYK-YVSLPQTPAGMVAVAPPNPQENCVGRSVFGAVAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVMG 205
            LPF+  +V  P   A      PP   E+C  + + G V GAG+G + G+FLGAMGDM P + +INGRE PQAP  EQ RLAY+ T +R     RNF + +A+F G +CV+EK RGK D  N+V +GC  GAA   KQGPQAAC GC G A FS +M+ +MG
Sbjct:   32 LPFFLPWVPRPAAGAADAMPTPPVLTESCGFKLIMGTVGGAGMGFVFGLFLGAMGDMQP-LQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMG 191          
BLAST of EWM26762.1 vs. NCBI_GenBank
Match: gi|223997844|ref|XP_002288595.1| (tim22-like protein [Thalassiosira pseudonana CCMP1335] >gi|220975703|gb|EED94031.1| tim22-like protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 136.732 bits (343), Expect = 4.022e-38
Identity = 59/121 (48.76%), Postives = 88/121 (72.73%), Query Frame = 0
Query:   87 LGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVMGPH 207
            +G++MG+F+GA+ D++P + +ING+E        Q+R   RAT ++  +W R F  +T +F G +C+VEK+RGKHD +NAV+SGC  GAA+ AKQGPQA+ +GC GFAAFS +++ +MG H
Sbjct:    1 MGLLMGVFMGALTDLTPPVTVINGKE--------QMRTTLRATADKSLYWCRQFAFITGVFGGSECLVEKYRGKHDVWNAVVSGCITGAAMQAKQGPQASAIGCGGFAAFSLVIDSIMGTH 113          
BLAST of EWM26762.1 vs. NCBI_GenBank
Match: gi|1210526633|dbj|GAX14591.1| (hypothetical protein FisN_6Lh371 [Fistulifera solaris])

HSP 1 Score: 140.198 bits (352), Expect = 5.005e-38
Identity = 78/165 (47.27%), Postives = 111/165 (67.27%), Query Frame = 0
Query:   43 PFPLPFYKYVSLPQTPAGMVAVAPPNPQE---NCVGRSVFGAVAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVM 204
            P+PLP +K V+ P  P       PP+      +C G+   G + GAG+G +MG+FLGA+ D +P + +I GR+ PQAP  EQ+R+  RAT E+  +WA NF  +T +F+G +C+VEK+RGK+D +N+V SGC  GAA+ AK GPQ+A LGC GFAAFS +++  M
Sbjct:   65 PYPLP-WKPVASPTEP-------PPDFSWLTGSCAGKVAIGVIGGAGMGALMGLFLGALSDTTPPVQVIGGRDVPQAPLREQMRVVMRATAEKSRYWAGNFAFITGVFAGSECLVEKYRGKNDLWNSVASGCITGAAMQAKAGPQSAALGCGGFAAFSLVIDSFM 221          
BLAST of EWM26762.1 vs. NCBI_GenBank
Match: gi|1072225416|gb|OEU10163.1| (mitochondrial import inner membrane translocase, subunit Tim17/22, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 137.117 bits (344), Expect = 6.995e-38
Identity = 70/134 (52.24%), Postives = 94/134 (70.15%), Query Frame = 0
Query:   71 ENCVGRSVFGAVAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVM 204
            ++C G++  G   G  +G++MG+FLGA+ D SP I  + GR+ PQAP  EQ+R   RAT E+  +W RNF  +T +F G +C+VEKFRGKHD +N V+SGC  GAAL AK GPQAA +GC GFAAFS +++  M
Sbjct:    1 DSCGGKAAIGVFGGGIMGLLMGVFLGALSDSSPPIQAVGGRDVPQAPFKEQVRFTMRATAEKSMYWCRNFAFITGVFGGSECLVEKFRGKHDMWNPVVSGCITGAALQAKAGPQAAAVGCGGFAAFSIVIDSFM 134          
BLAST of EWM26762.1 vs. NCBI_GenBank
Match: gi|1210519124|dbj|GAX22122.1| (hypothetical protein FisN_6Hh371 [Fistulifera solaris])

HSP 1 Score: 139.428 bits (350), Expect = 2.526e-37
Identity = 78/165 (47.27%), Postives = 111/165 (67.27%), Query Frame = 0
Query:   43 PFPLPFYKYVSLPQTPAGMVAVAPPNPQE---NCVGRSVFGAVAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVM 204
            P+PLP +K V+ P  P       PP+      +C G+   G + GAG+G +MG+FLGA+ D +P + +I GR+ PQAP  EQ+R+  RAT E+  +WA NF  +T +F+G +C+VEK+RGK+D +N+V SGC  GAA+ AK GPQ+A LGC GFAAFS +++  M
Sbjct:  105 PYPLP-WKPVASPTEP-------PPDFSWLTGSCAGKVAIGVIGGAGMGALMGLFLGALSDTTPPVQVIGGRDVPQAPLREQMRVVMRATAEKSRYWAGNFAFITGVFAGSECLVEKYRGKNDLWNSVASGCITGAAMQAKAGPQSAALGCGGFAAFSLVIDSFM 261          
BLAST of EWM26762.1 vs. NCBI_GenBank
Match: gi|219110167|ref|XP_002176835.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411370|gb|EEC51298.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 134.42 bits (337), Expect = 8.021e-37
Identity = 61/111 (54.95%), Postives = 81/111 (72.97%), Query Frame = 0
Query:   94 FLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVM 204
            FLGAM D +P + +I GRE PQAP  EQ+++  RAT ++  +W RNF  +T +F G +C+VEK+RGKHD +N+V SGC  GAAL AK GPQAA +GC GFAAFS +++  M
Sbjct:   26 FLGAMSDATPPVQVIAGREVPQAPLREQIKVTMRATGDKSLYWCRNFAFITGVFGGSECLVEKYRGKHDVWNSVASGCITGAALQAKSGPQAAAVGCGGFAAFSLVIDTFM 136          
BLAST of EWM26762.1 vs. NCBI_GenBank
Match: gi|675181365|ref|XP_008899567.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|566032027|gb|ETI54938.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567969698|gb|ETK94774.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567998094|gb|ETL48173.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568027308|gb|ETM01269.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568057802|gb|ETM54455.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568100217|gb|ETN14916.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570335742|gb|ETO83690.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570959778|gb|ETP24757.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|570996029|gb|ETP52739.1| hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 132.109 bits (331), Expect = 3.997e-35
Identity = 65/153 (42.48%), Postives = 94/153 (61.44%), Query Frame = 0
Query:   54 LPQTPAGMVAVAPPNP-QENCVGRSVFGAVAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVMG 205
            LP  P  ++    PNP  E+C G+    A  G  +G + G+ LG+   ++P +P+   RE P+ P  E L  ++R T  +C +W  NF+ ++A+FSG++C  EK RG+HD  N +++GC  GAAL+A QG QA CLGCAGFAAFS  + V  G
Sbjct:   50 LPAYPPQILQWQQPNPITESCAGKFFLSAAMGYVMGNVFGLVLGSYEGITPPVPLPGQRELPKVPWRESLAGSWRVTAGKCRYWGNNFLVISAMFSGLECATEKIRGRHDVGNELVAGCATGAALAAGQGIQAQCLGCAGFAAFSYAINVFTG 202          
BLAST of EWM26762.1 vs. NCBI_GenBank
Match: gi|1214685147|gb|OWZ02326.1| (Mitochondrial Protein Translocase [Phytophthora megakarya])

HSP 1 Score: 130.183 bits (326), Expect = 2.175e-34
Identity = 74/193 (38.34%), Postives = 106/193 (54.92%), Query Frame = 0
Query:   27 AELKCSKPDLLFTSPPP---FPLPFYK----------YVSLPQTPAGMVAVAPPNP-QENCVGRSVFGAVAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVMG 205
            A L     DL   +PP    FP  F K          +  LP  P  ++    PNP  E+C G+    A  G  +G + G+ LG+   ++P +P+   RE P+ P  E +  ++R T  +C +W  NF+ ++A+FSG++C  EK RG+HD  N +++GC  GAAL+A QG QA CLGCAGFAAFS  + V  G
Sbjct:   10 ARLGVHVEDLSKETPPNPFLFPRSFLKMHLLHDTVGIHPFLPAYPPQILQWQQPNPITESCAGKFFLSAAMGYVMGNVFGLVLGSYEGITPPVPLPGQRELPKVPWRESMVGSWRVTKGKCRYWGNNFLVISAMFSGLECASEKIRGRHDVGNELVAGCATGAALAAGQGFQAQCLGCAGFAAFSYAINVFTG 202          
The following BLAST results are available for this feature:
BLAST of EWM26762.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108850|gb|EWM26762.1|2.400e-148100.00mitochondrial import inner membrane translocase su... [more]
gi|397633389|gb|EJK70956.1|2.375e-4645.24hypothetical protein THAOC_07645 [Thalassiosira oc... [more]
gi|298713991|emb|CBJ27223.1|1.795e-4450.31Mitochondrial import inner membrane translocase su... [more]
gi|223997844|ref|XP_002288595.1|4.022e-3848.76tim22-like protein [Thalassiosira pseudonana CCMP1... [more]
gi|1210526633|dbj|GAX14591.1|5.005e-3847.27hypothetical protein FisN_6Lh371 [Fistulifera sola... [more]
gi|1072225416|gb|OEU10163.1|6.995e-3852.24mitochondrial import inner membrane translocase, s... [more]
gi|1210519124|dbj|GAX22122.1|2.526e-3747.27hypothetical protein FisN_6Hh371 [Fistulifera sola... [more]
gi|219110167|ref|XP_002176835.1|8.021e-3754.95predicted protein, partial [Phaeodactylum tricornu... [more]
gi|675181365|ref|XP_008899567.1|3.997e-3542.48hypothetical protein, variant [Phytophthora parasi... [more]
gi|1214685147|gb|OWZ02326.1|2.175e-3438.34Mitochondrial Protein Translocase [Phytophthora me... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3987rna3987Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications