EWM26762.1, cds3977 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26762.1 vs. NCBI_GenBank
Match: gi|585108850|gb|EWM26762.1| (mitochondrial import inner membrane translocase subunit tim22 [Nannochloropsis gaditana]) HSP 1 Score: 419.468 bits (1077), Expect = 2.400e-148 Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0
Query: 1 MSGPSHPHPPADVPTTPSAAEHKYPAAELKCSKPDLLFTSPPPFPLPFYKYVSLPQTPAGMVAVAPPNPQENCVGRSVFGAVAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVMGPH 207
MSGPSHPHPPADVPTTPSAAEHKYPAAELKCSKPDLLFTSPPPFPLPFYKYVSLPQTPAGMVAVAPPNPQENCVGRSVFGAVAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVMGPH
Sbjct: 1 MSGPSHPHPPADVPTTPSAAEHKYPAAELKCSKPDLLFTSPPPFPLPFYKYVSLPQTPAGMVAVAPPNPQENCVGRSVFGAVAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVMGPH 207
BLAST of EWM26762.1 vs. NCBI_GenBank
Match: gi|397633389|gb|EJK70956.1| (hypothetical protein THAOC_07645 [Thalassiosira oceanica]) HSP 1 Score: 162.155 bits (409), Expect = 2.375e-46 Identity = 76/168 (45.24%), Postives = 109/168 (64.88%), Query Frame = 0
Query: 43 PFPLPFYKYVSLPQTPAGMVAVAPPN---PQENCVGRSVFGAVAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVMGPH 207
P+P P+ + + P A PPN E+C ++ G + G +G++MG+FLGA+ DM+P + II G+E PQAP EQ+R RAT ++ +W R F +T +F G +C+VEK+RGKHD +N+V+SGC GAA+ AKQGPQA+ GC GFA FS +++ MG H
Sbjct: 85 PYPQPWARANASP-------AELPPNFDWLSESCGSKAAIGVIGGGAMGLVMGVFLGALTDMTPPVTIIEGKEVPQAPLKEQMRTTLRATADKSLYWCRQFAFITGVFGGSECLVEKYRGKHDVWNSVVSGCITGAAMQAKQGPQASAAGCGGFAVFSLVIDSFMGTH 245
BLAST of EWM26762.1 vs. NCBI_GenBank
Match: gi|298713991|emb|CBJ27223.1| (Mitochondrial import inner membrane translocase subunit TIM22 homolog [Ectocarpus siliculosus]) HSP 1 Score: 155.606 bits (392), Expect = 1.795e-44 Identity = 81/161 (50.31%), Postives = 103/161 (63.98%), Query Frame = 0
Query: 46 LPFYK-YVSLPQTPAGMVAVAPPNPQENCVGRSVFGAVAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVMG 205
LPF+ +V P A PP E+C + + G V GAG+G + G+FLGAMGDM P + +INGRE PQAP EQ RLAY+ T +R RNF + +A+F G +CV+EK RGK D N+V +GC GAA KQGPQAAC GC G A FS +M+ +MG
Sbjct: 32 LPFFLPWVPRPAAGAADAMPTPPVLTESCGFKLIMGTVGGAGMGFVFGLFLGAMGDMQP-LQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMG 191
BLAST of EWM26762.1 vs. NCBI_GenBank
Match: gi|223997844|ref|XP_002288595.1| (tim22-like protein [Thalassiosira pseudonana CCMP1335] >gi|220975703|gb|EED94031.1| tim22-like protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 136.732 bits (343), Expect = 4.022e-38 Identity = 59/121 (48.76%), Postives = 88/121 (72.73%), Query Frame = 0
Query: 87 LGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVMGPH 207
+G++MG+F+GA+ D++P + +ING+E Q+R RAT ++ +W R F +T +F G +C+VEK+RGKHD +NAV+SGC GAA+ AKQGPQA+ +GC GFAAFS +++ +MG H
Sbjct: 1 MGLLMGVFMGALTDLTPPVTVINGKE--------QMRTTLRATADKSLYWCRQFAFITGVFGGSECLVEKYRGKHDVWNAVVSGCITGAAMQAKQGPQASAIGCGGFAAFSLVIDSIMGTH 113
BLAST of EWM26762.1 vs. NCBI_GenBank
Match: gi|1210526633|dbj|GAX14591.1| (hypothetical protein FisN_6Lh371 [Fistulifera solaris]) HSP 1 Score: 140.198 bits (352), Expect = 5.005e-38 Identity = 78/165 (47.27%), Postives = 111/165 (67.27%), Query Frame = 0
Query: 43 PFPLPFYKYVSLPQTPAGMVAVAPPNPQE---NCVGRSVFGAVAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVM 204
P+PLP +K V+ P P PP+ +C G+ G + GAG+G +MG+FLGA+ D +P + +I GR+ PQAP EQ+R+ RAT E+ +WA NF +T +F+G +C+VEK+RGK+D +N+V SGC GAA+ AK GPQ+A LGC GFAAFS +++ M
Sbjct: 65 PYPLP-WKPVASPTEP-------PPDFSWLTGSCAGKVAIGVIGGAGMGALMGLFLGALSDTTPPVQVIGGRDVPQAPLREQMRVVMRATAEKSRYWAGNFAFITGVFAGSECLVEKYRGKNDLWNSVASGCITGAAMQAKAGPQSAALGCGGFAAFSLVIDSFM 221
BLAST of EWM26762.1 vs. NCBI_GenBank
Match: gi|1072225416|gb|OEU10163.1| (mitochondrial import inner membrane translocase, subunit Tim17/22, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 137.117 bits (344), Expect = 6.995e-38 Identity = 70/134 (52.24%), Postives = 94/134 (70.15%), Query Frame = 0
Query: 71 ENCVGRSVFGAVAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVM 204
++C G++ G G +G++MG+FLGA+ D SP I + GR+ PQAP EQ+R RAT E+ +W RNF +T +F G +C+VEKFRGKHD +N V+SGC GAAL AK GPQAA +GC GFAAFS +++ M
Sbjct: 1 DSCGGKAAIGVFGGGIMGLLMGVFLGALSDSSPPIQAVGGRDVPQAPFKEQVRFTMRATAEKSMYWCRNFAFITGVFGGSECLVEKFRGKHDMWNPVVSGCITGAALQAKAGPQAAAVGCGGFAAFSIVIDSFM 134
BLAST of EWM26762.1 vs. NCBI_GenBank
Match: gi|1210519124|dbj|GAX22122.1| (hypothetical protein FisN_6Hh371 [Fistulifera solaris]) HSP 1 Score: 139.428 bits (350), Expect = 2.526e-37 Identity = 78/165 (47.27%), Postives = 111/165 (67.27%), Query Frame = 0
Query: 43 PFPLPFYKYVSLPQTPAGMVAVAPPNPQE---NCVGRSVFGAVAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVM 204
P+PLP +K V+ P P PP+ +C G+ G + GAG+G +MG+FLGA+ D +P + +I GR+ PQAP EQ+R+ RAT E+ +WA NF +T +F+G +C+VEK+RGK+D +N+V SGC GAA+ AK GPQ+A LGC GFAAFS +++ M
Sbjct: 105 PYPLP-WKPVASPTEP-------PPDFSWLTGSCAGKVAIGVIGGAGMGALMGLFLGALSDTTPPVQVIGGRDVPQAPLREQMRVVMRATAEKSRYWAGNFAFITGVFAGSECLVEKYRGKNDLWNSVASGCITGAAMQAKAGPQSAALGCGGFAAFSLVIDSFM 261
BLAST of EWM26762.1 vs. NCBI_GenBank
Match: gi|219110167|ref|XP_002176835.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411370|gb|EEC51298.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 134.42 bits (337), Expect = 8.021e-37 Identity = 61/111 (54.95%), Postives = 81/111 (72.97%), Query Frame = 0
Query: 94 FLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVM 204
FLGAM D +P + +I GRE PQAP EQ+++ RAT ++ +W RNF +T +F G +C+VEK+RGKHD +N+V SGC GAAL AK GPQAA +GC GFAAFS +++ M
Sbjct: 26 FLGAMSDATPPVQVIAGREVPQAPLREQIKVTMRATGDKSLYWCRNFAFITGVFGGSECLVEKYRGKHDVWNSVASGCITGAALQAKSGPQAAAVGCGGFAAFSLVIDTFM 136
BLAST of EWM26762.1 vs. NCBI_GenBank
Match: gi|675181365|ref|XP_008899567.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|566032027|gb|ETI54938.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567969698|gb|ETK94774.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567998094|gb|ETL48173.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568027308|gb|ETM01269.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568057802|gb|ETM54455.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568100217|gb|ETN14916.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570335742|gb|ETO83690.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570959778|gb|ETP24757.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|570996029|gb|ETP52739.1| hypothetical protein, variant [Phytophthora parasitica P10297]) HSP 1 Score: 132.109 bits (331), Expect = 3.997e-35 Identity = 65/153 (42.48%), Postives = 94/153 (61.44%), Query Frame = 0
Query: 54 LPQTPAGMVAVAPPNP-QENCVGRSVFGAVAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVMG 205
LP P ++ PNP E+C G+ A G +G + G+ LG+ ++P +P+ RE P+ P E L ++R T +C +W NF+ ++A+FSG++C EK RG+HD N +++GC GAAL+A QG QA CLGCAGFAAFS + V G
Sbjct: 50 LPAYPPQILQWQQPNPITESCAGKFFLSAAMGYVMGNVFGLVLGSYEGITPPVPLPGQRELPKVPWRESLAGSWRVTAGKCRYWGNNFLVISAMFSGLECATEKIRGRHDVGNELVAGCATGAALAAGQGIQAQCLGCAGFAAFSYAINVFTG 202
BLAST of EWM26762.1 vs. NCBI_GenBank
Match: gi|1214685147|gb|OWZ02326.1| (Mitochondrial Protein Translocase [Phytophthora megakarya]) HSP 1 Score: 130.183 bits (326), Expect = 2.175e-34 Identity = 74/193 (38.34%), Postives = 106/193 (54.92%), Query Frame = 0
Query: 27 AELKCSKPDLLFTSPPP---FPLPFYK----------YVSLPQTPAGMVAVAPPNP-QENCVGRSVFGAVAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVMG 205
A L DL +PP FP F K + LP P ++ PNP E+C G+ A G +G + G+ LG+ ++P +P+ RE P+ P E + ++R T +C +W NF+ ++A+FSG++C EK RG+HD N +++GC GAAL+A QG QA CLGCAGFAAFS + V G
Sbjct: 10 ARLGVHVEDLSKETPPNPFLFPRSFLKMHLLHDTVGIHPFLPAYPPQILQWQQPNPITESCAGKFFLSAAMGYVMGNVFGLVLGSYEGITPPVPLPGQRELPKVPWRESMVGSWRVTKGKCRYWGNNFLVISAMFSGLECASEKIRGRHDVGNELVAGCATGAALAAGQGFQAQCLGCAGFAAFSYAINVFTG 202 The following BLAST results are available for this feature:
BLAST of EWM26762.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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