EWM26622.1, cds3963 (CDS) Nannochloropsis gaditana

Overview
NameEWM26622.1
Unique Namecds3963
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:536777..537352 -
Alignment locationCM002462.1:536505..536570 -
Alignment locationCM002462.1:536265..536405 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26622.1
Productcytochrome c oxidase subunit vb
Orig transcript idgnl|cribi|Naga_100001g147.8133.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:536777..537352 -
CM002462.1supercontigCM002462.1:536505..536570 -
CM002462.1supercontigCM002462.1:536265..536405 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0003824catalytic activity
GO:0004129cytochrome-c oxidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0006091generation of precursor metabolites and energy
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0005740mitochondrial envelope
Vocabulary: INTERPRO
TermDefinition
IPR002124Cyt_c_oxidase_su5b
Homology
BLAST of EWM26622.1 vs. NCBI_GenBank
Match: gi|585108710|gb|EWM26622.1| (cytochrome c oxidase subunit vb [Nannochloropsis gaditana])

HSP 1 Score: 535.798 bits (1379), Expect = 0.000e+0
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0
Query:    1 MTPVSVGGTKLPTHLVAITLNELYTDSCFGEVLENVAWKVLAFYLRHAMLSGKIYPTDSCTYPIASLHASPRLSESTSLGTAAIFSLWLSLVLMVSRPWLHRMISALKRIASAPVPKRQALGVLSTARHLGTLGEELKSAPSKEDEAKYAKVIKVGDKLYGVPAVQEGTFGHDLQQQVGRRFEELVYELNGEVLFNRDPVFALPDQGTKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSLYKID 260
            MTPVSVGGTKLPTHLVAITLNELYTDSCFGEVLENVAWKVLAFYLRHAMLSGKIYPTDSCTYPIASLHASPRLSESTSLGTAAIFSLWLSLVLMVSRPWLHRMISALKRIASAPVPKRQALGVLSTARHLGTLGEELKSAPSKEDEAKYAKVIKVGDKLYGVPAVQEGTFGHDLQQQVGRRFEELVYELNGEVLFNRDPVFALPDQGTKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSLYKID
Sbjct:    1 MTPVSVGGTKLPTHLVAITLNELYTDSCFGEVLENVAWKVLAFYLRHAMLSGKIYPTDSCTYPIASLHASPRLSESTSLGTAAIFSLWLSLVLMVSRPWLHRMISALKRIASAPVPKRQALGVLSTARHLGTLGEELKSAPSKEDEAKYAKVIKVGDKLYGVPAVQEGTFGHDLQQQVGRRFEELVYELNGEVLFNRDPVFALPDQGTKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSLYKID 260          
BLAST of EWM26622.1 vs. NCBI_GenBank
Match: gi|635361258|emb|CCI10644.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 76.6406 bits (187), Expect = 6.001e-14
Identity = 39/81 (48.15%), Postives = 51/81 (62.96%), Query Frame = 0
Query:  178 VGRRFEELVYELNGEVLFNRDPVFALPDQG-TKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSLY 257
            VGR+ EEL  E  G + FNRDP+     QG +K +P+LVPS  + R +G        VFWF L+KG + YVP+I+KYF LY
Sbjct:   35 VGRQREELEDEKAGIITFNRDPIETDETQGNSKEDPILVPSFNDVRPIGVSHNDSSYVFWFNLQKGKIFYVPQIEKYFKLY 115          
BLAST of EWM26622.1 vs. NCBI_GenBank
Match: gi|325190058|emb|CCA24540.1| (conserved hypothetical protein [Albugo laibachii Nc14] >gi|325191185|emb|CCA25971.1| conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 74.3294 bits (181), Expect = 4.430e-13
Identity = 40/81 (49.38%), Postives = 48/81 (59.26%), Query Frame = 0
Query:  178 VGRRFEELVYELNGEVLFNRDPVFALPDQG-TKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSLY 257
            VGR+ EEL  E  G V FNRDP+     QG +K +P+LVPS    R +G        VFWF L+KG   YVP I+KYF LY
Sbjct:   35 VGRQREELDDEKAGIVTFNRDPIETDETQGNSKEDPILVPSFNEVRPIGVSHNDSSYVFWFNLQKGKTFYVPAIEKYFKLY 115          
BLAST of EWM26622.1 vs. NCBI_GenBank
Match: gi|1173958004|gb|OQS04431.1| (hypothetical protein THRCLA_20884 [Thraustotheca clavata])

HSP 1 Score: 72.0182 bits (175), Expect = 2.239e-12
Identity = 37/84 (44.05%), Postives = 52/84 (61.90%), Query Frame = 0
Query:  174 LQQQVGRRFEELVYELNGEVLFNRDPVFALPDQG-TKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSL 256
            + Q VGR+ +EL     G  LF+RDP+F+   QG +K +P+LVPS ++ER+VG        + WF L +G + YVP  DKYF L
Sbjct:   29 IDQAVGRQGDELKMAEQGIDLFSRDPIFSEETQGNSKDDPILVPSFQSERVVGISHNDSPYIKWFNLHEGKVYYVPDYDKYFKL 112          
BLAST of EWM26622.1 vs. NCBI_GenBank
Match: gi|675209643|ref|XP_008913706.1| (hypothetical protein PPTG_17268 [Phytophthora parasitica INRA-310] >gi|566007178|gb|ETI30089.1| hypothetical protein F443_22791 [Phytophthora parasitica P1569] >gi|566010722|gb|ETI33633.1| hypothetical protein F443_19710 [Phytophthora parasitica P1569] >gi|567948227|gb|ETK73980.1| hypothetical protein L915_19145 [Phytophthora parasitica] >gi|567976899|gb|ETL27413.1| hypothetical protein L916_19038 [Phytophthora parasitica] >gi|568006411|gb|ETL80670.1| hypothetical protein L917_18856 [Phytophthora parasitica] >gi|568036245|gb|ETM33861.1| hypothetical protein L914_18946 [Phytophthora parasitica] >gi|568086044|gb|ETN00940.1| hypothetical protein PPTG_17268 [Phytophthora parasitica INRA-310] >gi|570314466|gb|ETO62414.1| hypothetical protein F444_19675 [Phytophthora parasitica P1976] >gi|570938218|gb|ETP03475.1| hypothetical protein F441_19546 [Phytophthora parasitica CJ01A1] >gi|570968548|gb|ETP31667.1| hypothetical protein F442_19490 [Phytophthora parasitica P10297] >gi|970644763|gb|KUF85481.1| hypothetical protein AM588_10000974 [Phytophthora nicotianae] >gi|970646218|gb|KUF86459.1| Cytochrome c oxidase subunit 5B [Phytophthora nicotianae] >gi|970649357|gb|KUF88654.1| Cytochrome c oxidase subunit 5B [Phytophthora nicotianae])

HSP 1 Score: 72.0182 bits (175), Expect = 2.402e-12
Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 0
Query:  168 GTFGHDLQQQVGRRFEELVYELNGEVLFNRDPVFALPDQG-TKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSLYK 258
            G    DL+  VGR  +EL     G   FNRDP+ +  +QG TK +P+LVPS  + R VG        ++WF + KG + Y+P+I+KYF LY 
Sbjct:   26 GGIPDDLEHAVGRERQELEAAEIGVTQFNRDPLESDENQGNTKDDPILVPSFNDVRTVGVSHNDASYLYWFNMEKGKVHYLPEIEKYFMLYN 117          
BLAST of EWM26622.1 vs. NCBI_GenBank
Match: gi|953491694|emb|CEG45703.1| (cytochrome c oxidase subunit mitochondrial-like [Plasmopara halstedii])

HSP 1 Score: 71.633 bits (174), Expect = 3.981e-12
Identity = 39/92 (42.39%), Postives = 52/92 (56.52%), Query Frame = 0
Query:  168 GTFGHDLQQQVGRRFEELVYELNGEVLFNRDPVFALPDQG-TKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSLYK 258
            G    DL+  VGR  +EL     G V FNRDP+ +   QG +K +P+ VPS  N R VG        V+WF + KG + Y+P+I+KYF LY 
Sbjct:   26 GGIPDDLEHAVGRERQELEAAKIGVVQFNRDPLESDESQGNSKDDPIFVPSFNNIRTVGVSHNDASYVYWFNMEKGKVHYLPEIEKYFMLYN 117          
BLAST of EWM26622.1 vs. NCBI_GenBank
Match: gi|301102462|ref|XP_002900318.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262102059|gb|EEY60111.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 71.2478 bits (173), Expect = 4.841e-12
Identity = 37/92 (40.22%), Postives = 54/92 (58.70%), Query Frame = 0
Query:  168 GTFGHDLQQQVGRRFEELVYELNGEVLFNRDPVFALPDQG-TKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSLYK 258
            G   +DL+  VGR  +EL     G   FNRDP+ +  +QG +K +P+LVPS  + R VG        ++WF + KG + Y+P+I+KYF LY 
Sbjct:   26 GGIPNDLEHAVGRERQELDAAEIGVTQFNRDPLESDENQGNSKDDPILVPSFNDVRTVGVSHNDASYLYWFNMEKGKVHYLPEIEKYFMLYN 117          
BLAST of EWM26622.1 vs. NCBI_GenBank
Match: gi|695438172|ref|XP_009532397.1| (hypothetical protein PHYSODRAFT_286921 [Phytophthora sojae] >gi|348672244|gb|EGZ12064.1| hypothetical protein PHYSODRAFT_286921 [Phytophthora sojae])

HSP 1 Score: 70.4774 bits (171), Expect = 8.886e-12
Identity = 38/92 (41.30%), Postives = 51/92 (55.43%), Query Frame = 0
Query:  168 GTFGHDLQQQVGRRFEELVYELNGEVLFNRDPVFALPDQG-TKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSLYK 258
            G    DL+  VGR  +EL     G   FNRDP+     QG +K +P+LVPS  + R VG        V+WF + KG + Y+P+I+KYF LY 
Sbjct:   26 GGIPDDLEHAVGRERQELEAAEIGVTQFNRDPLETEETQGNSKDDPILVPSFNDVRTVGVAHNDASYVYWFNMEKGKVHYLPQIEKYFMLYN 117          
BLAST of EWM26622.1 vs. NCBI_GenBank
Match: gi|1214703435|gb|OWZ15450.1| (hypothetical protein PHMEG_00010897 [Phytophthora megakarya])

HSP 1 Score: 70.0922 bits (170), Expect = 1.462e-11
Identity = 37/92 (40.22%), Postives = 52/92 (56.52%), Query Frame = 0
Query:  168 GTFGHDLQQQVGRRFEELVYELNGEVLFNRDPVFALPDQG-TKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSLYK 258
            G    DL+  VGR  +EL     G   FNRDP+ +   QG +K +P+LVPS  + R VG        ++WF + KG + Y+P+I+KYF LY 
Sbjct:   24 GGIPDDLEHAVGRERQELEAAQIGVTQFNRDPLESDETQGNSKDDPILVPSFNDVRTVGVSHNDASYLYWFNMEKGKVHYLPQIEKYFMLYN 115          
BLAST of EWM26622.1 vs. NCBI_GenBank
Match: gi|673015184|ref|XP_008861553.1| (hypothetical protein H310_00512 [Aphanomyces invadans] >gi|574483151|gb|ETW10142.1| hypothetical protein H310_00512 [Aphanomyces invadans])

HSP 1 Score: 69.3218 bits (168), Expect = 2.198e-11
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 0
Query:  174 LQQQVGRRFEELVYELNGEVLFNRDPVFALPDQG-TKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSL 256
            + Q VGR+ EEL     G  LFNRDP+ +  +QG +K++P+LVPS  + R VG        + WF L +G + YVP+ +KYF L
Sbjct:   29 IDQAVGRQGEELKLAEQGIELFNRDPIASEENQGNSKNDPILVPSFNHTRTVGISHNDSPYIVWFNLEEGKVHYVPRFNKYFKL 112          
The following BLAST results are available for this feature:
BLAST of EWM26622.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108710|gb|EWM26622.1|0.000e+0100.00cytochrome c oxidase subunit vb [Nannochloropsis g... [more]
gi|635361258|emb|CCI10644.1|6.001e-1448.15unnamed protein product [Albugo candida][more]
gi|325190058|emb|CCA24540.1|4.430e-1349.38conserved hypothetical protein [Albugo laibachii N... [more]
gi|1173958004|gb|OQS04431.1|2.239e-1244.05hypothetical protein THRCLA_20884 [Thraustotheca c... [more]
gi|675209643|ref|XP_008913706.1|2.402e-1241.30hypothetical protein PPTG_17268 [Phytophthora para... [more]
gi|953491694|emb|CEG45703.1|3.981e-1242.39cytochrome c oxidase subunit mitochondrial-like [P... [more]
gi|301102462|ref|XP_002900318.1|4.841e-1240.22conserved hypothetical protein [Phytophthora infes... [more]
gi|695438172|ref|XP_009532397.1|8.886e-1241.30hypothetical protein PHYSODRAFT_286921 [Phytophtho... [more]
gi|1214703435|gb|OWZ15450.1|1.462e-1140.22hypothetical protein PHMEG_00010897 [Phytophthora ... [more]
gi|673015184|ref|XP_008861553.1|2.198e-1142.86hypothetical protein H310_00512 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3973rna3973Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications