EWM26622.1, cds3963 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26622.1 vs. NCBI_GenBank
Match: gi|585108710|gb|EWM26622.1| (cytochrome c oxidase subunit vb [Nannochloropsis gaditana]) HSP 1 Score: 535.798 bits (1379), Expect = 0.000e+0 Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0
Query: 1 MTPVSVGGTKLPTHLVAITLNELYTDSCFGEVLENVAWKVLAFYLRHAMLSGKIYPTDSCTYPIASLHASPRLSESTSLGTAAIFSLWLSLVLMVSRPWLHRMISALKRIASAPVPKRQALGVLSTARHLGTLGEELKSAPSKEDEAKYAKVIKVGDKLYGVPAVQEGTFGHDLQQQVGRRFEELVYELNGEVLFNRDPVFALPDQGTKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSLYKID 260
MTPVSVGGTKLPTHLVAITLNELYTDSCFGEVLENVAWKVLAFYLRHAMLSGKIYPTDSCTYPIASLHASPRLSESTSLGTAAIFSLWLSLVLMVSRPWLHRMISALKRIASAPVPKRQALGVLSTARHLGTLGEELKSAPSKEDEAKYAKVIKVGDKLYGVPAVQEGTFGHDLQQQVGRRFEELVYELNGEVLFNRDPVFALPDQGTKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSLYKID
Sbjct: 1 MTPVSVGGTKLPTHLVAITLNELYTDSCFGEVLENVAWKVLAFYLRHAMLSGKIYPTDSCTYPIASLHASPRLSESTSLGTAAIFSLWLSLVLMVSRPWLHRMISALKRIASAPVPKRQALGVLSTARHLGTLGEELKSAPSKEDEAKYAKVIKVGDKLYGVPAVQEGTFGHDLQQQVGRRFEELVYELNGEVLFNRDPVFALPDQGTKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSLYKID 260
BLAST of EWM26622.1 vs. NCBI_GenBank
Match: gi|635361258|emb|CCI10644.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 76.6406 bits (187), Expect = 6.001e-14 Identity = 39/81 (48.15%), Postives = 51/81 (62.96%), Query Frame = 0
Query: 178 VGRRFEELVYELNGEVLFNRDPVFALPDQG-TKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSLY 257
VGR+ EEL E G + FNRDP+ QG +K +P+LVPS + R +G VFWF L+KG + YVP+I+KYF LY
Sbjct: 35 VGRQREELEDEKAGIITFNRDPIETDETQGNSKEDPILVPSFNDVRPIGVSHNDSSYVFWFNLQKGKIFYVPQIEKYFKLY 115
BLAST of EWM26622.1 vs. NCBI_GenBank
Match: gi|325190058|emb|CCA24540.1| (conserved hypothetical protein [Albugo laibachii Nc14] >gi|325191185|emb|CCA25971.1| conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 74.3294 bits (181), Expect = 4.430e-13 Identity = 40/81 (49.38%), Postives = 48/81 (59.26%), Query Frame = 0
Query: 178 VGRRFEELVYELNGEVLFNRDPVFALPDQG-TKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSLY 257
VGR+ EEL E G V FNRDP+ QG +K +P+LVPS R +G VFWF L+KG YVP I+KYF LY
Sbjct: 35 VGRQREELDDEKAGIVTFNRDPIETDETQGNSKEDPILVPSFNEVRPIGVSHNDSSYVFWFNLQKGKTFYVPAIEKYFKLY 115
BLAST of EWM26622.1 vs. NCBI_GenBank
Match: gi|1173958004|gb|OQS04431.1| (hypothetical protein THRCLA_20884 [Thraustotheca clavata]) HSP 1 Score: 72.0182 bits (175), Expect = 2.239e-12 Identity = 37/84 (44.05%), Postives = 52/84 (61.90%), Query Frame = 0
Query: 174 LQQQVGRRFEELVYELNGEVLFNRDPVFALPDQG-TKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSL 256
+ Q VGR+ +EL G LF+RDP+F+ QG +K +P+LVPS ++ER+VG + WF L +G + YVP DKYF L
Sbjct: 29 IDQAVGRQGDELKMAEQGIDLFSRDPIFSEETQGNSKDDPILVPSFQSERVVGISHNDSPYIKWFNLHEGKVYYVPDYDKYFKL 112
BLAST of EWM26622.1 vs. NCBI_GenBank
Match: gi|675209643|ref|XP_008913706.1| (hypothetical protein PPTG_17268 [Phytophthora parasitica INRA-310] >gi|566007178|gb|ETI30089.1| hypothetical protein F443_22791 [Phytophthora parasitica P1569] >gi|566010722|gb|ETI33633.1| hypothetical protein F443_19710 [Phytophthora parasitica P1569] >gi|567948227|gb|ETK73980.1| hypothetical protein L915_19145 [Phytophthora parasitica] >gi|567976899|gb|ETL27413.1| hypothetical protein L916_19038 [Phytophthora parasitica] >gi|568006411|gb|ETL80670.1| hypothetical protein L917_18856 [Phytophthora parasitica] >gi|568036245|gb|ETM33861.1| hypothetical protein L914_18946 [Phytophthora parasitica] >gi|568086044|gb|ETN00940.1| hypothetical protein PPTG_17268 [Phytophthora parasitica INRA-310] >gi|570314466|gb|ETO62414.1| hypothetical protein F444_19675 [Phytophthora parasitica P1976] >gi|570938218|gb|ETP03475.1| hypothetical protein F441_19546 [Phytophthora parasitica CJ01A1] >gi|570968548|gb|ETP31667.1| hypothetical protein F442_19490 [Phytophthora parasitica P10297] >gi|970644763|gb|KUF85481.1| hypothetical protein AM588_10000974 [Phytophthora nicotianae] >gi|970646218|gb|KUF86459.1| Cytochrome c oxidase subunit 5B [Phytophthora nicotianae] >gi|970649357|gb|KUF88654.1| Cytochrome c oxidase subunit 5B [Phytophthora nicotianae]) HSP 1 Score: 72.0182 bits (175), Expect = 2.402e-12 Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 0
Query: 168 GTFGHDLQQQVGRRFEELVYELNGEVLFNRDPVFALPDQG-TKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSLYK 258
G DL+ VGR +EL G FNRDP+ + +QG TK +P+LVPS + R VG ++WF + KG + Y+P+I+KYF LY
Sbjct: 26 GGIPDDLEHAVGRERQELEAAEIGVTQFNRDPLESDENQGNTKDDPILVPSFNDVRTVGVSHNDASYLYWFNMEKGKVHYLPEIEKYFMLYN 117
BLAST of EWM26622.1 vs. NCBI_GenBank
Match: gi|953491694|emb|CEG45703.1| (cytochrome c oxidase subunit mitochondrial-like [Plasmopara halstedii]) HSP 1 Score: 71.633 bits (174), Expect = 3.981e-12 Identity = 39/92 (42.39%), Postives = 52/92 (56.52%), Query Frame = 0
Query: 168 GTFGHDLQQQVGRRFEELVYELNGEVLFNRDPVFALPDQG-TKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSLYK 258
G DL+ VGR +EL G V FNRDP+ + QG +K +P+ VPS N R VG V+WF + KG + Y+P+I+KYF LY
Sbjct: 26 GGIPDDLEHAVGRERQELEAAKIGVVQFNRDPLESDESQGNSKDDPIFVPSFNNIRTVGVSHNDASYVYWFNMEKGKVHYLPEIEKYFMLYN 117
BLAST of EWM26622.1 vs. NCBI_GenBank
Match: gi|301102462|ref|XP_002900318.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262102059|gb|EEY60111.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 71.2478 bits (173), Expect = 4.841e-12 Identity = 37/92 (40.22%), Postives = 54/92 (58.70%), Query Frame = 0
Query: 168 GTFGHDLQQQVGRRFEELVYELNGEVLFNRDPVFALPDQG-TKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSLYK 258
G +DL+ VGR +EL G FNRDP+ + +QG +K +P+LVPS + R VG ++WF + KG + Y+P+I+KYF LY
Sbjct: 26 GGIPNDLEHAVGRERQELDAAEIGVTQFNRDPLESDENQGNSKDDPILVPSFNDVRTVGVSHNDASYLYWFNMEKGKVHYLPEIEKYFMLYN 117
BLAST of EWM26622.1 vs. NCBI_GenBank
Match: gi|695438172|ref|XP_009532397.1| (hypothetical protein PHYSODRAFT_286921 [Phytophthora sojae] >gi|348672244|gb|EGZ12064.1| hypothetical protein PHYSODRAFT_286921 [Phytophthora sojae]) HSP 1 Score: 70.4774 bits (171), Expect = 8.886e-12 Identity = 38/92 (41.30%), Postives = 51/92 (55.43%), Query Frame = 0
Query: 168 GTFGHDLQQQVGRRFEELVYELNGEVLFNRDPVFALPDQG-TKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSLYK 258
G DL+ VGR +EL G FNRDP+ QG +K +P+LVPS + R VG V+WF + KG + Y+P+I+KYF LY
Sbjct: 26 GGIPDDLEHAVGRERQELEAAEIGVTQFNRDPLETEETQGNSKDDPILVPSFNDVRTVGVAHNDASYVYWFNMEKGKVHYLPQIEKYFMLYN 117
BLAST of EWM26622.1 vs. NCBI_GenBank
Match: gi|1214703435|gb|OWZ15450.1| (hypothetical protein PHMEG_00010897 [Phytophthora megakarya]) HSP 1 Score: 70.0922 bits (170), Expect = 1.462e-11 Identity = 37/92 (40.22%), Postives = 52/92 (56.52%), Query Frame = 0
Query: 168 GTFGHDLQQQVGRRFEELVYELNGEVLFNRDPVFALPDQG-TKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSLYK 258
G DL+ VGR +EL G FNRDP+ + QG +K +P+LVPS + R VG ++WF + KG + Y+P+I+KYF LY
Sbjct: 24 GGIPDDLEHAVGRERQELEAAQIGVTQFNRDPLESDETQGNSKDDPILVPSFNDVRTVGVSHNDASYLYWFNMEKGKVHYLPQIEKYFMLYN 115
BLAST of EWM26622.1 vs. NCBI_GenBank
Match: gi|673015184|ref|XP_008861553.1| (hypothetical protein H310_00512 [Aphanomyces invadans] >gi|574483151|gb|ETW10142.1| hypothetical protein H310_00512 [Aphanomyces invadans]) HSP 1 Score: 69.3218 bits (168), Expect = 2.198e-11 Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 0
Query: 174 LQQQVGRRFEELVYELNGEVLFNRDPVFALPDQG-TKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSL 256
+ Q VGR+ EEL G LFNRDP+ + +QG +K++P+LVPS + R VG + WF L +G + YVP+ +KYF L
Sbjct: 29 IDQAVGRQGEELKLAEQGIELFNRDPIASEENQGNSKNDPILVPSFNHTRTVGISHNDSPYIVWFNLEEGKVHYVPRFNKYFKL 112 The following BLAST results are available for this feature:
BLAST of EWM26622.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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