EWM26597.1, cds3958 (CDS) Nannochloropsis gaditana

Overview
NameEWM26597.1
Unique Namecds3958
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:528063..528470 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26597.1
Productdpy-30-like protein
Orig transcript idgnl|cribi|Naga_100001g153.8108.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:528063..528470 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
Vocabulary: INTERPRO
TermDefinition
IPR007858Dpy-30_motif
Homology
[Close]
BLAST of EWM26597.1 vs. NCBI_GenBank
Match: gi|585108685|gb|EWM26597.1| (dpy-30-like protein [Nannochloropsis gaditana])

HSP 1 Score: 275.789 bits (704), Expect = 7.352e-94
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 
Query:    1 MDTSEVDERAQQAPHNQPTADGGEGELTATSSAIVSGDAPSPASGERNGMIVGQQKEEIAESHGVNDGEGAGTAAVAQHEQDKVNMQSLPIRAYLDQTVVPILLDGMSQLVVERPSNPIEWLAAYLIKNNPQKFE 135
            MDTSEVDERAQQAPHNQPTADGGEGELTATSSAIVSGDAPSPASGERNGMIVGQQKEEIAESHGVNDGEGAGTAAVAQHEQDKVNMQSLPIRAYLDQTVVPILLDGMSQLVVERPSNPIEWLAAYLIKNNPQKFE
Sbjct:    1 MDTSEVDERAQQAPHNQPTADGGEGELTATSSAIVSGDAPSPASGERNGMIVGQQKEEIAESHGVNDGEGAGTAAVAQHEQDKVNMQSLPIRAYLDQTVVPILLDGMSQLVVERPSNPIEWLAAYLIKNNPQKFE 135
[Close]
BLAST of EWM26597.1 vs. NCBI_GenBank
Match: gi|1214671438|gb|OWY95399.1| (hypothetical protein PHMEG_00034605 [Phytophthora megakarya])

HSP 1 Score: 103.99 bits (258), Expect = 6.573e-26
Identity = 51/74 (68.92%), Postives = 59/74 (79.73%), Query Frame = 0 
Query:   60 AESHGVNDGEGAGTAAVAQHEQDKVNMQSLPIRAYLDQTVVPILLDGMSQLVVERPSNPIEWLAAYLIKNNPQK 133
            A  H  ++ + A TAA  +  QDKV +Q+LPIRAYLDQTVVPILL GMS LV ERP+NPIEWLA+YLIKNNPQK
Sbjct:   66 AAKHDEDEVKAADTAA--ESVQDKVEVQALPIRAYLDQTVVPILLQGMSALVKERPANPIEWLASYLIKNNPQK 137
[Close]
BLAST of EWM26597.1 vs. NCBI_GenBank
Match: gi|953488197|emb|CEG48214.1| (dpy-30 like protein [Plasmopara halstedii])

HSP 1 Score: 103.605 bits (257), Expect = 1.237e-25
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 0 
Query:   75 AVAQHEQDKVNMQSLPIRAYLDQTVVPILLDGMSQLVVERPSNPIEWLAAYLIKNNPQ 132
            +VA++ QDKV +Q+LPIRAYLDQTVVPILL GMS LV ERP NPIEWLAAYLIKNNPQ
Sbjct:   87 SVAENVQDKVEVQALPIRAYLDQTVVPILLQGMSALVKERPPNPIEWLAAYLIKNNPQ 144
[Close]
BLAST of EWM26597.1 vs. NCBI_GenBank
Match: gi|675168983|ref|XP_008893376.1| (hypothetical protein PPTG_01745 [Phytophthora parasitica INRA-310] >gi|566022121|gb|ETI45032.1| hypothetical protein F443_10300 [Phytophthora parasitica P1569] >gi|567959429|gb|ETK85001.1| hypothetical protein L915_10072 [Phytophthora parasitica] >gi|567988152|gb|ETL38433.1| hypothetical protein L916_09979 [Phytophthora parasitica] >gi|568017371|gb|ETL91548.1| hypothetical protein L917_09904 [Phytophthora parasitica] >gi|568047771|gb|ETM44843.1| hypothetical protein L914_09952 [Phytophthora parasitica] >gi|568106973|gb|ETN21603.1| hypothetical protein PPTG_01745 [Phytophthora parasitica INRA-310] >gi|570325678|gb|ETO73626.1| hypothetical protein F444_10399 [Phytophthora parasitica P1976] >gi|570949575|gb|ETP14832.1| hypothetical protein F441_10237 [Phytophthora parasitica CJ01A1] >gi|570982947|gb|ETP42873.1| hypothetical protein F442_10209 [Phytophthora parasitica P10297])

HSP 1 Score: 102.064 bits (253), Expect = 4.127e-25
Identity = 47/58 (81.03%), Postives = 50/58 (86.21%), Query Frame = 0 
Query:   75 AVAQHEQDKVNMQSLPIRAYLDQTVVPILLDGMSQLVVERPSNPIEWLAAYLIKNNPQ 132
            A A+  QDKV +Q+LPIRAYLDQTVVPILL GMS LV ERP NPIEWLAAYLIKNNPQ
Sbjct:   85 ATAESVQDKVEVQALPIRAYLDQTVVPILLQGMSALVKERPPNPIEWLAAYLIKNNPQ 142
[Close]
BLAST of EWM26597.1 vs. NCBI_GenBank
Match: gi|970663802|gb|KUG00878.1| (dpy-30 protein [Phytophthora nicotianae])

HSP 1 Score: 102.064 bits (253), Expect = 4.149e-25
Identity = 47/58 (81.03%), Postives = 50/58 (86.21%), Query Frame = 0 
Query:   75 AVAQHEQDKVNMQSLPIRAYLDQTVVPILLDGMSQLVVERPSNPIEWLAAYLIKNNPQ 132
            A A+  QDKV +Q+LPIRAYLDQTVVPILL GMS LV ERP NPIEWLAAYLIKNNPQ
Sbjct:   84 ATAESVQDKVEVQALPIRAYLDQTVVPILLQGMSALVKERPPNPIEWLAAYLIKNNPQ 141
[Close]
BLAST of EWM26597.1 vs. NCBI_GenBank
Match: gi|695433452|ref|XP_009531180.1| (hypothetical protein PHYSODRAFT_355015 [Phytophthora sojae] >gi|348673932|gb|EGZ13751.1| hypothetical protein PHYSODRAFT_355015 [Phytophthora sojae])

HSP 1 Score: 100.908 bits (250), Expect = 2.012e-24
Identity = 48/73 (65.75%), Postives = 54/73 (73.97%), Query Frame = 0 
Query:   60 AESHGVNDGEGAGTAAVAQHEQDKVNMQSLPIRAYLDQTVVPILLDGMSQLVVERPSNPIEWLAAYLIKNNPQ 132
            A +   ++ E       A+  QDKV +Q+LPIRAYLDQTVVPILL GMS LV ERP NPIEWLAAYLIKNNPQ
Sbjct:   82 APASKADEDEVKAAEPAAESVQDKVEVQALPIRAYLDQTVVPILLQGMSALVKERPPNPIEWLAAYLIKNNPQ 154
[Close]
BLAST of EWM26597.1 vs. NCBI_GenBank
Match: gi|698807904|ref|XP_009836981.1| (hypothetical protein H257_11682 [Aphanomyces astaci] >gi|574108046|gb|ETV73555.1| hypothetical protein H257_11682 [Aphanomyces astaci])

HSP 1 Score: 97.4413 bits (241), Expect = 9.515e-24
Identity = 46/64 (71.88%), Postives = 49/64 (76.56%), Query Frame = 0 
Query:   69 EGAGTAAVAQHEQDKVNMQSLPIRAYLDQTVVPILLDGMSQLVVERPSNPIEWLAAYLIKNNPQ 132
            E      VA     K+++QSLPIRAYLDQTVVPILL GMS LV ERP NPIEWLAAYLIKNNPQ
Sbjct:   40 EAKNAEKVADQSAAKLDVQSLPIRAYLDQTVVPILLQGMSSLVKERPPNPIEWLAAYLIKNNPQ 103
[Close]
BLAST of EWM26597.1 vs. NCBI_GenBank
Match: gi|301108371|ref|XP_002903267.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262097639|gb|EEY55691.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 98.5969 bits (244), Expect = 1.320e-23
Identity = 46/67 (68.66%), Postives = 52/67 (77.61%), Query Frame = 0 
Query:   66 NDGEGAGTAAVAQHEQDKVNMQSLPIRAYLDQTVVPILLDGMSQLVVERPSNPIEWLAAYLIKNNPQ 132
            ++ E      V +  QDKV +Q+LPIRAYLDQTVVPILL GMS LV ERP NPIEWLAAYL+KNNPQ
Sbjct:   78 DEDEAKEAEPVGESVQDKVEVQALPIRAYLDQTVVPILLQGMSALVKERPPNPIEWLAAYLLKNNPQ 144
[Close]
BLAST of EWM26597.1 vs. NCBI_GenBank
Match: gi|301108301|ref|XP_002903232.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262097604|gb|EEY55656.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 98.5969 bits (244), Expect = 1.320e-23
Identity = 46/67 (68.66%), Postives = 52/67 (77.61%), Query Frame = 0 
Query:   66 NDGEGAGTAAVAQHEQDKVNMQSLPIRAYLDQTVVPILLDGMSQLVVERPSNPIEWLAAYLIKNNPQ 132
            ++ E      V +  QDKV +Q+LPIRAYLDQTVVPILL GMS LV ERP NPIEWLAAYL+KNNPQ
Sbjct:   78 DEDEAKEAEPVGESVQDKVEVQALPIRAYLDQTVVPILLQGMSALVKERPPNPIEWLAAYLLKNNPQ 144
[Close]
BLAST of EWM26597.1 vs. NCBI_GenBank
Match: gi|673036570|ref|XP_008872246.1| (hypothetical protein H310_08322 [Aphanomyces invadans] >gi|574471812|gb|ETV98818.1| hypothetical protein H310_08322 [Aphanomyces invadans])

HSP 1 Score: 96.2857 bits (238), Expect = 3.152e-23
Identity = 54/95 (56.84%), Postives = 63/95 (66.32%), Query Frame = 0 
Query:   42 PASGERNGMIVGQQKEEIAESHGVNDGEGAGTAAVAQHEQD----KVNMQSLPIRAYLDQTVVPILLDGMSQLVVERPSNPIEWLAAYLIKNNPQ 132
            P + E  G+    + +  AES    D + A  A  A+   D    K+++QSLPIRAYLDQTVVPILL GMS LV ERP NPIEWLAAYLIKNNPQ
Sbjct:   10 PPTTEDQGVAPDPKGDGAAESK-TQDNDEATEAKNAEKAADQSAAKLDVQSLPIRAYLDQTVVPILLQGMSSLVKERPPNPIEWLAAYLIKNNPQ 103
The following BLAST results are available for this feature:
BLAST of EWM26597.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108685|gb|EWM26597.1|7.352e-94100.00dpy-30-like protein [Nannochloropsis gaditana][more]
gi|1214671438|gb|OWY95399.1|6.573e-2668.92hypothetical protein PHMEG_00034605 [Phytophthora ... [more]
gi|953488197|emb|CEG48214.1|1.237e-2581.03dpy-30 like protein [Plasmopara halstedii][more]
gi|675168983|ref|XP_008893376.1|4.127e-2581.03hypothetical protein PPTG_01745 [Phytophthora para... [more]
gi|970663802|gb|KUG00878.1|4.149e-2581.03dpy-30 protein [Phytophthora nicotianae][more]
gi|695433452|ref|XP_009531180.1|2.012e-2465.75hypothetical protein PHYSODRAFT_355015 [Phytophtho... [more]
gi|698807904|ref|XP_009836981.1|9.515e-2471.88hypothetical protein H257_11682 [Aphanomyces astac... [more]
gi|301108371|ref|XP_002903267.1|1.320e-2368.66conserved hypothetical protein [Phytophthora infes... [more]
gi|301108301|ref|XP_002903232.1|1.320e-2368.66conserved hypothetical protein [Phytophthora infes... [more]
gi|673036570|ref|XP_008872246.1|3.152e-2356.84hypothetical protein H310_08322 [Aphanomyces invad... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3968rna3968Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications