EWM26764.1, cds3925 (CDS) Nannochloropsis gaditana

Overview
NameEWM26764.1
Unique Namecds3925
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:449964..450031 -
Alignment locationCM002462.1:449608..449776 -
Alignment locationCM002462.1:449282..449455 -
Alignment locationCM002462.1:448876..449154 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26764.1
Productnucleoside diphosphate kinase
Orig transcript idgnl|cribi|Naga_100001g189.8275.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:449964..450031 -
CM002462.1supercontigCM002462.1:449608..449776 -
CM002462.1supercontigCM002462.1:449282..449455 -
CM002462.1supercontigCM002462.1:448876..449154 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006183GTP biosynthetic process
GO:0006165nucleoside diphosphate phosphorylation
GO:0006228UTP biosynthetic process
GO:0006241CTP biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0000166nucleotide binding
GO:0004550nucleoside diphosphate kinase activity
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR023005Nucleoside_diP_kinase_AS
IPR001564Nucleoside_diP_kinase
Homology
[Close]
BLAST of EWM26764.1 vs. NCBI_GenBank
Match: gi|585108852|gb|EWM26764.1| (nucleoside diphosphate kinase [Nannochloropsis gaditana])

HSP 1 Score: 468.389 bits (1204), Expect = 4.512e-167
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0 
Query:    1 MFATTMTRCLRRAAGIRAFSSSMGRTTAFTAKRASYRVLGGLALFAAGTVWAAQGAHFDTPTLCSAGKAPFTGVPGTDKERTFIAIKPDGVQRGLIAAIIARFENKGFKLVALKMLWPTKEKAESHYADLATKPFFKGLVAYFSSGPIVAMVWEGKDAIKTGRVLLGATNPAAAVPGTIRGDLAISVGRNICHGSDGPESAVHEIANWFTPEEVSDYPRSLDEWIVSDN 229
            MFATTMTRCLRRAAGIRAFSSSMGRTTAFTAKRASYRVLGGLALFAAGTVWAAQGAHFDTPTLCSAGKAPFTGVPGTDKERTFIAIKPDGVQRGLIAAIIARFENKGFKLVALKMLWPTKEKAESHYADLATKPFFKGLVAYFSSGPIVAMVWEGKDAIKTGRVLLGATNPAAAVPGTIRGDLAISVGRNICHGSDGPESAVHEIANWFTPEEVSDYPRSLDEWIVSDN
Sbjct:    1 MFATTMTRCLRRAAGIRAFSSSMGRTTAFTAKRASYRVLGGLALFAAGTVWAAQGAHFDTPTLCSAGKAPFTGVPGTDKERTFIAIKPDGVQRGLIAAIIARFENKGFKLVALKMLWPTKEKAESHYADLATKPFFKGLVAYFSSGPIVAMVWEGKDAIKTGRVLLGATNPAAAVPGTIRGDLAISVGRNICHGSDGPESAVHEIANWFTPEEVSDYPRSLDEWIVSDN 229
[Close]
BLAST of EWM26764.1 vs. NCBI_GenBank
Match: gi|673014466|ref|XP_008861194.1| (hypothetical protein H310_00264, partial [Aphanomyces invadans] >gi|574482792|gb|ETW09783.1| hypothetical protein H310_00264, partial [Aphanomyces invadans])

HSP 1 Score: 258.455 bits (659), Expect = 6.042e-84
Identity = 125/216 (57.87%), Postives = 151/216 (69.91%), Query Frame = 0 
Query:   16 IRAFSSSMGRTTAFTAKRASYRVLGGLALFAAGTVWAAQGAHFDTPTLCSAGK--APFTGVPGTDKERTFIAIKPDGVQRGLIAAIIARFENKGFKLVALKMLWPTKEKAESHYADLATKPFFKGLVAYFSSGPIVAMVWEGKDAIKTGRVLLGATNPAAAVPGTIRGDLAISVGRNICHGSDGPESAVHEIANWFTPEEVSDYPRSLDEWIVSDN 229
            IR  +    RT A  A+  + +    L +  AG    A G  F  P    A K   P+TG+PGT  ERTFIAIKPDGV+R LI+ +I RFE KG+KLVA+K+L PT+ +A  HYADL+++PFF GLV YFSSGPIVAMVWEG+D I TGR +LGATNP  A PGT+RGD  IS GRN+ HGSDGPESA HEI  WFT  E+ DY R++DEWIV+DN
Sbjct:   25 IRNVAQQAARTMATQARPLAQKAFSPL-MVVAGVTGVAAGIAFSNPAESKAVKKVTPYTGIPGTKNERTFIAIKPDGVERALISEVIGRFEKKGYKLVAMKLLTPTEARAREHYADLSSRPFFNGLVKYFSSGPIVAMVWEGQDVILTGRKILGATNPNQAAPGTLRGDNTISTGRNLIHGSDGPESAKHEIGMWFTAAEIQDYERAIDEWIVADN 239
[Close]
BLAST of EWM26764.1 vs. NCBI_GenBank
Match: gi|698794804|ref|XP_009830431.1| (hypothetical protein H257_06773 [Aphanomyces astaci] >gi|574115020|gb|ETV80507.1| hypothetical protein H257_06773 [Aphanomyces astaci])

HSP 1 Score: 256.529 bits (654), Expect = 1.993e-83
Identity = 126/216 (58.33%), Postives = 151/216 (69.91%), Query Frame = 0 
Query:   16 IRAFSSSMGRTTAFTAKRASYRVLGGLALFAAGTVWAAQGAHFDTPTLCSAGK--APFTGVPGTDKERTFIAIKPDGVQRGLIAAIIARFENKGFKLVALKMLWPTKEKAESHYADLATKPFFKGLVAYFSSGPIVAMVWEGKDAIKTGRVLLGATNPAAAVPGTIRGDLAISVGRNICHGSDGPESAVHEIANWFTPEEVSDYPRSLDEWIVSDN 229
            IR  +    RT A  A+  + +    L +  AG    A G  F TP    A K  +P+TG+PGT  ERTFIAIKPDGV+R LI+ +I RFE KG+KLVALK+L PT+ +A  HYADL+ +PFF GLV YF+SGPIVAMVWEG D I TGR +LGATNP  A PGT+RGD  IS GRN+ HGSDGPESA HEI  WFT  E+ DY R++DEWIV+DN
Sbjct:    7 IRNVAQQAARTMATQARPLAQKAFSPL-MVVAGVSGVAAGIAFSTPAESKAVKKVSPYTGIPGTKNERTFIAIKPDGVERALISEVIGRFEKKGYKLVALKLLTPTEARAREHYADLSGRPFFNGLVKYFASGPIVAMVWEGTDVILTGRKILGATNPNQAAPGTLRGDNTISTGRNLVHGSDGPESAKHEIGMWFTAGEIQDYERAIDEWIVADN 221
[Close]
BLAST of EWM26764.1 vs. NCBI_GenBank
Match: gi|953486018|emb|CEG50196.1| (nucleoside diphosphate kinase [Plasmopara halstedii])

HSP 1 Score: 251.906 bits (642), Expect = 1.923e-81
Identity = 126/220 (57.27%), Postives = 150/220 (68.18%), Query Frame = 0 
Query:   23 MGRTTAFTAKRASYRVLGG-----------LALFAAGTVWAAQGAHFDTPTLCSAGK--APFTGVPGTDKERTFIAIKPDGVQRGLIAAIIARFENKGFKLVALKMLWPTKEKAESHYADLATKPFFKGLVAYFSSGPIVAMVWEGKDAIKTGRVLLGATNPAAAVPGTIRGDLAISVGRNICHGSDGPESAVHEIANWFTPEEVSDYPRSLDEWIVSDN 229
            + R  A+ AK+ S+R               + L  A TV  +  A    P   +  K   P  GVPGT  ERTFIAIKPDGVQRGLI+ +I RFE KG+KLVALK +  T+E+A++HYADL+ +PFF GLV YF+SGPIV MVWEG D I TGR +LGATNP  A PGT+RGD  IS GRN+ HGSDGPESA HEI  WFTPEE+S+Y R+LD WIVSDN
Sbjct:    5 VSRRVAYAAKQTSFRTFASQVRAFSTVPAPVTLAVAATVGVSAFALTAAPIAENKAKPTTPLAGVPGTSTERTFIAIKPDGVQRGLISEVIGRFEKKGYKLVALKQMTATEERAKAHYADLSARPFFPGLVKYFTSGPIVCMVWEGTDVILTGRKILGATNPNQAAPGTLRGDNCISTGRNLVHGSDGPESAKHEITMWFTPEEISNYERALDTWIVSDN 224
[Close]
BLAST of EWM26764.1 vs. NCBI_GenBank
Match: gi|1214708930|gb|OWZ20159.1| (Nucleoside diphosphate kinase B [Phytophthora megakarya])

HSP 1 Score: 251.521 bits (641), Expect = 2.145e-81
Identity = 116/160 (72.50%), Postives = 132/160 (82.50%), Query Frame = 0 
Query:   70 PFTGVPGTDKERTFIAIKPDGVQRGLIAAIIARFENKGFKLVALKMLWPTKEKAESHYADLATKPFFKGLVAYFSSGPIVAMVWEGKDAIKTGRVLLGATNPAAAVPGTIRGDLAISVGRNICHGSDGPESAVHEIANWFTPEEVSDYPRSLDEWIVSDN 229
            P  GVPGT KERTFIAIKPDGVQRGLI+ +IARFE KG+KLVALKM+  T+E+A++HYADL+ +PFF GLV YFSSGPIV MVWEG D I TGR +LGATNP  A PGT+RGD  IS GRN+ HGSDGP+SA HEI  WFT EEVS+Y R+LD WIVSDN
Sbjct:   66 PLAGVPGTSKERTFIAIKPDGVQRGLISEVIARFEKKGYKLVALKMMTATEERAKNHYADLSARPFFPGLVKYFSSGPIVCMVWEGTDVILTGRKILGATNPNQAAPGTLRGDNCISTGRNLVHGSDGPDSAKHEINMWFTNEEVSNYERALDTWIVSDN 225
[Close]
BLAST of EWM26764.1 vs. NCBI_GenBank
Match: gi|695443300|ref|XP_009533669.1| (hypothetical protein PHYSODRAFT_464988, partial [Phytophthora sojae] >gi|348671103|gb|EGZ10924.1| hypothetical protein PHYSODRAFT_464988, partial [Phytophthora sojae])

HSP 1 Score: 250.366 bits (638), Expect = 5.666e-81
Identity = 114/160 (71.25%), Postives = 132/160 (82.50%), Query Frame = 0 
Query:   70 PFTGVPGTDKERTFIAIKPDGVQRGLIAAIIARFENKGFKLVALKMLWPTKEKAESHYADLATKPFFKGLVAYFSSGPIVAMVWEGKDAIKTGRVLLGATNPAAAVPGTIRGDLAISVGRNICHGSDGPESAVHEIANWFTPEEVSDYPRSLDEWIVSDN 229
            P  GVPGT KERTFIAIKPDGVQRGLI+ +IARFE KG+KLVALK++  T+E+A++HYADL+ +PFF GLV YF+SGPIV MVWEG D I TGR +LGATNP  A PGT+RGD  IS GRN+ HGSDGP+SA HEI  WF PEEVS+Y R+LD WIVSDN
Sbjct:   63 PLAGVPGTSKERTFIAIKPDGVQRGLISEVIARFEKKGYKLVALKLMTATEERAKNHYADLSERPFFPGLVKYFTSGPIVCMVWEGTDVILTGRKILGATNPNQAAPGTLRGDNCISTGRNLVHGSDGPDSAKHEITMWFKPEEVSNYERALDSWIVSDN 222
[Close]
BLAST of EWM26764.1 vs. NCBI_GenBank
Match: gi|970650364|gb|KUF89416.1| (hypothetical protein AM588_10002655 [Phytophthora nicotianae])

HSP 1 Score: 247.284 bits (630), Expect = 5.056e-80
Identity = 123/213 (57.75%), Postives = 146/213 (68.54%), Query Frame = 0 
Query:   21 SSMGRTTAFTAKRASYRVLGGLALFAAGTVWAAQGAHFDTPTLCSAGKA----PFTGVPGTDKERTFIAIKPDGVQRGLIAAIIARFENKGFKLVALKMLWPTKEKAESHYADLATKPFFKGLVAYFSSGPIVAMVWEGKDAIKTGRVLLGATNPAAAVPGTIRGDLAISVGRNICHGSDGPESAVHEIANWFTPEEVSDYPRSLDEWIVSDN 229
            S + R  A  AKR + R           T      +    P L +   A    P  GVPGT KERTFIAIKPDGVQRGLI+ +I RFE KG+KLVALK++  T+ +A++HYADL+ +PFF GLV YF+SGPIV MVWEG D I TGR +LGATNP  A PGT+RGD  IS GRN+ HGSDGP+SA HEI  WFTPEE+S+Y R+LD WIVSDN
Sbjct:    3 SRVSRRVASAAKRNAARTF---------TTQTRAASAVKAPVLANKAAAKPNTPLAGVPGTAKERTFIAIKPDGVQRGLISEVIGRFEKKGYKLVALKLMTATEARAKAHYADLSERPFFPGLVKYFTSGPIVCMVWEGTDVILTGRKILGATNPNQAAPGTLRGDNCISTGRNLVHGSDGPDSAKHEITMWFTPEEISNYERALDSWIVSDN 206
[Close]
BLAST of EWM26764.1 vs. NCBI_GenBank
Match: gi|1173961522|gb|OQS07545.1| (nucleoside diphosphate kinase B [Thraustotheca clavata])

HSP 1 Score: 247.284 bits (630), Expect = 8.412e-80
Identity = 111/161 (68.94%), Postives = 132/161 (81.99%), Query Frame = 0 
Query:   69 APFTGVPGTDKERTFIAIKPDGVQRGLIAAIIARFENKGFKLVALKMLWPTKEKAESHYADLATKPFFKGLVAYFSSGPIVAMVWEGKDAIKTGRVLLGATNPAAAVPGTIRGDLAISVGRNICHGSDGPESAVHEIANWFTPEEVSDYPRSLDEWIVSDN 229
            +P+TGVPGT  ERTFIAIKPDGV+RGLI+ +IARFE KG+KLVA+KM+  T+ +A  HYADL++KPFF GLV YF+SGPIV MVWEG D I TGR +LGATNP  A PGT+RGD  IS GRN+ HGSDGP+SA HEI  WFT  E++DY RS+DEW+VSDN
Sbjct:   60 SPYTGVPGTKHERTFIAIKPDGVERGLISEVIARFEKKGYKLVAMKMMTATEARARDHYADLSSKPFFGGLVKYFASGPIVCMVWEGNDVILTGRKILGATNPNQAAPGTLRGDNCISTGRNLVHGSDGPDSAKHEIGMWFTQAEINDYARSIDEWVVSDN 220
[Close]
BLAST of EWM26764.1 vs. NCBI_GenBank
Match: gi|568033935|gb|ETM31626.1| (hypothetical protein L914_20849 [Phytophthora parasitica])

HSP 1 Score: 247.284 bits (630), Expect = 1.119e-79
Identity = 112/160 (70.00%), Postives = 131/160 (81.88%), Query Frame = 0 
Query:   70 PFTGVPGTDKERTFIAIKPDGVQRGLIAAIIARFENKGFKLVALKMLWPTKEKAESHYADLATKPFFKGLVAYFSSGPIVAMVWEGKDAIKTGRVLLGATNPAAAVPGTIRGDLAISVGRNICHGSDGPESAVHEIANWFTPEEVSDYPRSLDEWIVSDN 229
            P  GVPGT KERTFIAIKPDGVQRGLI+ +I RFE KG+KLVALK++  T+ +A++HYADL+ +PFF GLV YF+SGPIV MVWEG D I TGR +LGATNP  A PGT+RGD  IS GRN+ HGSDGP+SA HEI  WFTPEE+S+Y R+LD WIVSDN
Sbjct:   66 PLAGVPGTAKERTFIAIKPDGVQRGLISEVIGRFEKKGYKLVALKLMTATEARAKAHYADLSERPFFPGLVKYFTSGPIVCMVWEGTDVILTGRKILGATNPNQAAPGTLRGDNCISTGRNLVHGSDGPDSAKHEITMWFTPEEISNYERALDSWIVSDN 225
[Close]
BLAST of EWM26764.1 vs. NCBI_GenBank
Match: gi|675179399|ref|XP_008898584.1| (hypothetical protein PPTG_06420 [Phytophthora parasitica INRA-310] >gi|566008417|gb|ETI31328.1| hypothetical protein F443_21701 [Phytophthora parasitica P1569] >gi|567945895|gb|ETK71706.1| hypothetical protein L915_21101 [Phytophthora parasitica] >gi|567974552|gb|ETL25142.1| hypothetical protein L916_20977 [Phytophthora parasitica] >gi|568004016|gb|ETL78353.1| hypothetical protein L917_20836 [Phytophthora parasitica] >gi|568101551|gb|ETN16237.1| hypothetical protein PPTG_06420 [Phytophthora parasitica INRA-310] >gi|570312083|gb|ETO60031.1| hypothetical protein F444_21733 [Phytophthora parasitica P1976] >gi|570935876|gb|ETP01133.1| hypothetical protein F441_21591 [Phytophthora parasitica CJ01A1] >gi|570966166|gb|ETP29285.1| hypothetical protein F442_21557 [Phytophthora parasitica P10297] >gi|970628045|gb|KUF75804.1| Nucleoside diphosphate kinase [Phytophthora nicotianae])

HSP 1 Score: 247.284 bits (630), Expect = 1.156e-79
Identity = 112/160 (70.00%), Postives = 131/160 (81.88%), Query Frame = 0 
Query:   70 PFTGVPGTDKERTFIAIKPDGVQRGLIAAIIARFENKGFKLVALKMLWPTKEKAESHYADLATKPFFKGLVAYFSSGPIVAMVWEGKDAIKTGRVLLGATNPAAAVPGTIRGDLAISVGRNICHGSDGPESAVHEIANWFTPEEVSDYPRSLDEWIVSDN 229
            P  GVPGT KERTFIAIKPDGVQRGLI+ +I RFE KG+KLVALK++  T+ +A++HYADL+ +PFF GLV YF+SGPIV MVWEG D I TGR +LGATNP  A PGT+RGD  IS GRN+ HGSDGP+SA HEI  WFTPEE+S+Y R+LD WIVSDN
Sbjct:   66 PLAGVPGTAKERTFIAIKPDGVQRGLISEVIGRFEKKGYKLVALKLMTATEARAKAHYADLSERPFFPGLVKYFTSGPIVCMVWEGTDVILTGRKILGATNPNQAAPGTLRGDNCISTGRNLVHGSDGPDSAKHEITMWFTPEEISNYERALDSWIVSDN 225
The following BLAST results are available for this feature:
BLAST of EWM26764.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108852|gb|EWM26764.1|4.512e-167100.00nucleoside diphosphate kinase [Nannochloropsis gad... [more]
gi|673014466|ref|XP_008861194.1|6.042e-8457.87hypothetical protein H310_00264, partial [Aphanomy... [more]
gi|698794804|ref|XP_009830431.1|1.993e-8358.33hypothetical protein H257_06773 [Aphanomyces astac... [more]
gi|953486018|emb|CEG50196.1|1.923e-8157.27nucleoside diphosphate kinase [Plasmopara halstedi... [more]
gi|1214708930|gb|OWZ20159.1|2.145e-8172.50Nucleoside diphosphate kinase B [Phytophthora mega... [more]
gi|695443300|ref|XP_009533669.1|5.666e-8171.25hypothetical protein PHYSODRAFT_464988, partial [P... [more]
gi|970650364|gb|KUF89416.1|5.056e-8057.75hypothetical protein AM588_10002655 [Phytophthora ... [more]
gi|1173961522|gb|OQS07545.1|8.412e-8068.94nucleoside diphosphate kinase B [Thraustotheca cla... [more]
gi|568033935|gb|ETM31626.1|1.119e-7970.00hypothetical protein L914_20849 [Phytophthora para... [more]
gi|675179399|ref|XP_008898584.1|1.156e-7970.00hypothetical protein PPTG_06420 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3934rna3934Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications