EWM26780.1, cds3893 (CDS) Nannochloropsis gaditana

Overview
NameEWM26780.1
Unique Namecds3893
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:376245..376595 +

Link to JBrowse

Properties
Property NameValue
Start range376245
Start range.
Protein idEWM26780.1
Productubiquitin carboxyl-terminal hydrolase 15 isoform 2
Partialtrue
Orig transcript idgnl|cribi|Naga_102446g1.8967.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:376245..376595 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0036459thiol-dependent ubiquitinyl hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0009056catabolic process
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR028889USP_dom
IPR018200USP_CS
IPR001394Peptidase_C19_UCH
Homology
BLAST of EWM26780.1 vs. NCBI_GenBank
Match: gi|585108870|gb|EWM26780.1| (ubiquitin carboxyl-terminal hydrolase 15 isoform 2, partial [Nannochloropsis gaditana])

HSP 1 Score: 234.958 bits (598), Expect = 2.913e-78
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0
Query:    1 PLPGRRGSVGLVNLGNTCYLNSAVQCLAHTLPLTRYFLAHRLAEDLNPSSPLGSGGRVARAYERLVKEMWFGEARVCNPQALKAAVTRFSPPSLLAMPSTTPTSSWSSSWTSSTRT 116
            PLPGRRGSVGLVNLGNTCYLNSAVQCLAHTLPLTRYFLAHRLAEDLNPSSPLGSGGRVARAYERLVKEMWFGEARVCNPQALKAAVTRFSPPSLLAMPSTTPTSSWSSSWTSSTRT
Sbjct:    1 PLPGRRGSVGLVNLGNTCYLNSAVQCLAHTLPLTRYFLAHRLAEDLNPSSPLGSGGRVARAYERLVKEMWFGEARVCNPQALKAAVTRFSPPSLLAMPSTTPTSSWSSSWTSSTRT 116          
BLAST of EWM26780.1 vs. NCBI_GenBank
Match: gi|514700993|ref|XP_004998064.1| (hypothetical protein PTSG_11617 [Salpingoeca rosetta] >gi|326430318|gb|EGD75888.1| hypothetical protein PTSG_11617 [Salpingoeca rosetta])

HSP 1 Score: 118.627 bits (296), Expect = 1.084e-28
Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 0
Query:    5 RRGSVGLVNLGNTCYLNSAVQCLAHTLPLTRYFLAHRLAEDLNPSSPLGSGGRVARAYERLVKEMWFGEARVCNPQALKAAVTRFSP 91
            R+G  GL NLGNTC++NSA+QCL+HTLPLTRYFL     EDLNP +P+G GGR+A AY  L+ ++W G ARV  P+  K A+ RF+P
Sbjct:  330 RQGRTGLTNLGNTCFMNSALQCLSHTLPLTRYFLEGPYKEDLNPDNPIGCGGRLAMAYRELIAQLWQGSARVITPREFKFAIGRFAP 416          
BLAST of EWM26780.1 vs. NCBI_GenBank
Match: gi|635369505|emb|CCI42292.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 113.235 bits (282), Expect = 9.050e-27
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 0
Query:    5 RRGSVGLVNLGNTCYLNSAVQCLAHTLPLTRYFLAHRLAEDLNPSSPLGSGGRVARAYERLVKEMWFGEARVCNPQALKAAVTRFSP 91
            RRG VGL NLGNTC+LNSA+QCL+H   LT YFL+ R  +DLN  +PLG+GG +A  Y  L++E+WFG     +P ALK A+ RF+P
Sbjct:  380 RRGKVGLRNLGNTCFLNSALQCLSHMRLLTDYFLSTRFQQDLNRGNPLGTGGELALVYNELIRELWFGSTSQLSPIALKRAIARFAP 466          
BLAST of EWM26780.1 vs. NCBI_GenBank
Match: gi|635369504|emb|CCI42291.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 112.849 bits (281), Expect = 1.176e-26
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 0
Query:    5 RRGSVGLVNLGNTCYLNSAVQCLAHTLPLTRYFLAHRLAEDLNPSSPLGSGGRVARAYERLVKEMWFGEARVCNPQALKAAVTRFSP 91
            RRG VGL NLGNTC+LNSA+QCL+H   LT YFL+ R  +DLN  +PLG+GG +A  Y  L++E+WFG     +P ALK A+ RF+P
Sbjct:  380 RRGKVGLRNLGNTCFLNSALQCLSHMRLLTDYFLSTRFQQDLNRGNPLGTGGELALVYNELIRELWFGSTSQLSPIALKRAIARFAP 466          
BLAST of EWM26780.1 vs. NCBI_GenBank
Match: gi|635369506|emb|CCI42293.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 112.849 bits (281), Expect = 1.176e-26
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 0
Query:    5 RRGSVGLVNLGNTCYLNSAVQCLAHTLPLTRYFLAHRLAEDLNPSSPLGSGGRVARAYERLVKEMWFGEARVCNPQALKAAVTRFSP 91
            RRG VGL NLGNTC+LNSA+QCL+H   LT YFL+ R  +DLN  +PLG+GG +A  Y  L++E+WFG     +P ALK A+ RF+P
Sbjct:  380 RRGKVGLRNLGNTCFLNSALQCLSHMRLLTDYFLSTRFQQDLNRGNPLGTGGELALVYNELIRELWFGSTSQLSPIALKRAIARFAP 466          
BLAST of EWM26780.1 vs. NCBI_GenBank
Match: gi|953495185|emb|CEG43092.1| (ubiquitinspecific protease [Plasmopara halstedii])

HSP 1 Score: 112.849 bits (281), Expect = 1.247e-26
Identity = 47/87 (54.02%), Postives = 67/87 (77.01%), Query Frame = 0
Query:    5 RRGSVGLVNLGNTCYLNSAVQCLAHTLPLTRYFLAHRLAEDLNPSSPLGSGGRVARAYERLVKEMWFGEARVCNPQALKAAVTRFSP 91
            RRG +GL NLGNTC++NSA+QCL+H   LTRYFL+++  +DLNP +PLG+GG +A  Y+ L+K++WFG     +P  LK A++RF+P
Sbjct:  306 RRGKMGLRNLGNTCFMNSALQCLSHVEILTRYFLSNKYKKDLNPDNPLGTGGNLAAEYDALLKDLWFGTVPCTSPANLKRAISRFAP 392          
BLAST of EWM26780.1 vs. NCBI_GenBank
Match: gi|325182386|emb|CCA16839.1| (ubiquitinspecific protease putative [Albugo laibachii Nc14])

HSP 1 Score: 110.923 bits (276), Expect = 4.852e-26
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 0
Query:    5 RRGSVGLVNLGNTCYLNSAVQCLAHTLPLTRYFLAHRLAEDLNPSSPLGSGGRVARAYERLVKEMWFGEARVCNPQALKAAVTRFSP 91
            RRG VGL NLGNTC+LNSA+QCL+H   LT YFL+ R  +DLN  +PLG+GG +A  Y  L++E+WFG     +P ALK A+ RF+P
Sbjct:  381 RRGKVGLRNLGNTCFLNSALQCLSHMHVLTNYFLSTRFQQDLNRDNPLGTGGELALVYNDLIRELWFGSTSQLSPIALKRAIARFAP 467          
BLAST of EWM26780.1 vs. NCBI_GenBank
Match: gi|301111055|ref|XP_002904607.1| (ubiquitin-specific protease, putative [Phytophthora infestans T30-4] >gi|262095924|gb|EEY53976.1| ubiquitin-specific protease, putative [Phytophthora infestans T30-4])

HSP 1 Score: 109.768 bits (273), Expect = 1.386e-25
Identity = 48/87 (55.17%), Postives = 66/87 (75.86%), Query Frame = 0
Query:    5 RRGSVGLVNLGNTCYLNSAVQCLAHTLPLTRYFLAHRLAEDLNPSSPLGSGGRVARAYERLVKEMWFGEARVCNPQALKAAVTRFSP 91
            RRG +GL NLGNTC++NSA+QCL+H   LTRYFL++R  +DLN  +PLG+GG +A  Y+ L+KE+WFG     +P  LK A++RF+P
Sbjct:  310 RRGKMGLRNLGNTCFMNSALQCLSHVELLTRYFLSNRYKKDLNRDNPLGTGGNLAEEYDGLLKELWFGTVPSTSPANLKRAISRFAP 396          
BLAST of EWM26780.1 vs. NCBI_GenBank
Match: gi|970651611|gb|KUF90408.1| (Ubiquitin carboxyl-terminal hydrolase [Phytophthora nicotianae])

HSP 1 Score: 108.997 bits (271), Expect = 2.566e-25
Identity = 47/87 (54.02%), Postives = 66/87 (75.86%), Query Frame = 0
Query:    5 RRGSVGLVNLGNTCYLNSAVQCLAHTLPLTRYFLAHRLAEDLNPSSPLGSGGRVARAYERLVKEMWFGEARVCNPQALKAAVTRFSP 91
            RRG +GL NLGNTC++NSA+QCL+H   LTRYFL+++  +DLN  +PLG+GG +A  Y+ L+KE+WFG     +P  LK A++RF+P
Sbjct:  314 RRGKMGLRNLGNTCFMNSALQCLSHVELLTRYFLSNQYKKDLNRDNPLGTGGNLAEEYDALLKELWFGTVPSTSPANLKRAISRFAP 400          
BLAST of EWM26780.1 vs. NCBI_GenBank
Match: gi|675187701|ref|XP_008902735.1| (hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|566028406|gb|ETI51317.1| hypothetical protein, variant 2 [Phytophthora parasitica P1569] >gi|568023745|gb|ETL97798.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568054152|gb|ETM50953.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568097051|gb|ETN11795.1| hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|570332119|gb|ETO80067.1| hypothetical protein, variant 2 [Phytophthora parasitica P1976])

HSP 1 Score: 108.612 bits (270), Expect = 3.259e-25
Identity = 47/87 (54.02%), Postives = 66/87 (75.86%), Query Frame = 0
Query:    5 RRGSVGLVNLGNTCYLNSAVQCLAHTLPLTRYFLAHRLAEDLNPSSPLGSGGRVARAYERLVKEMWFGEARVCNPQALKAAVTRFSP 91
            RRG +GL NLGNTC++NSA+QCL+H   LTRYFL+++  +DLN  +PLG+GG +A  Y+ L+KE+WFG     +P  LK A++RF+P
Sbjct:   96 RRGKMGLRNLGNTCFMNSALQCLSHVELLTRYFLSNQYKKDLNRDNPLGTGGNLAEEYDALLKELWFGTVPSTSPANLKRAISRFAP 182          
The following BLAST results are available for this feature:
BLAST of EWM26780.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108870|gb|EWM26780.1|2.913e-78100.00ubiquitin carboxyl-terminal hydrolase 15 isoform 2... [more]
gi|514700993|ref|XP_004998064.1|1.084e-2858.62hypothetical protein PTSG_11617 [Salpingoeca roset... [more]
gi|635369505|emb|CCI42292.1|9.050e-2756.32unnamed protein product [Albugo candida][more]
gi|635369504|emb|CCI42291.1|1.176e-2656.32unnamed protein product [Albugo candida][more]
gi|635369506|emb|CCI42293.1|1.176e-2656.32unnamed protein product [Albugo candida][more]
gi|953495185|emb|CEG43092.1|1.247e-2654.02ubiquitinspecific protease [Plasmopara halstedii][more]
gi|325182386|emb|CCA16839.1|4.852e-2656.32ubiquitinspecific protease putative [Albugo laibac... [more]
gi|301111055|ref|XP_002904607.1|1.386e-2555.17ubiquitin-specific protease, putative [Phytophthor... [more]
gi|970651611|gb|KUF90408.1|2.566e-2554.02Ubiquitin carboxyl-terminal hydrolase [Phytophthor... [more]
gi|675187701|ref|XP_008902735.1|3.259e-2554.02hypothetical protein, variant 2 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3902rna3902Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications