EWM26780.1, cds3893 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26780.1 vs. NCBI_GenBank
Match: gi|585108870|gb|EWM26780.1| (ubiquitin carboxyl-terminal hydrolase 15 isoform 2, partial [Nannochloropsis gaditana]) HSP 1 Score: 234.958 bits (598), Expect = 2.913e-78 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 Query: 1 PLPGRRGSVGLVNLGNTCYLNSAVQCLAHTLPLTRYFLAHRLAEDLNPSSPLGSGGRVARAYERLVKEMWFGEARVCNPQALKAAVTRFSPPSLLAMPSTTPTSSWSSSWTSSTRT 116 PLPGRRGSVGLVNLGNTCYLNSAVQCLAHTLPLTRYFLAHRLAEDLNPSSPLGSGGRVARAYERLVKEMWFGEARVCNPQALKAAVTRFSPPSLLAMPSTTPTSSWSSSWTSSTRT Sbjct: 1 PLPGRRGSVGLVNLGNTCYLNSAVQCLAHTLPLTRYFLAHRLAEDLNPSSPLGSGGRVARAYERLVKEMWFGEARVCNPQALKAAVTRFSPPSLLAMPSTTPTSSWSSSWTSSTRT 116
BLAST of EWM26780.1 vs. NCBI_GenBank
Match: gi|514700993|ref|XP_004998064.1| (hypothetical protein PTSG_11617 [Salpingoeca rosetta] >gi|326430318|gb|EGD75888.1| hypothetical protein PTSG_11617 [Salpingoeca rosetta]) HSP 1 Score: 118.627 bits (296), Expect = 1.084e-28 Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 0 Query: 5 RRGSVGLVNLGNTCYLNSAVQCLAHTLPLTRYFLAHRLAEDLNPSSPLGSGGRVARAYERLVKEMWFGEARVCNPQALKAAVTRFSP 91 R+G GL NLGNTC++NSA+QCL+HTLPLTRYFL EDLNP +P+G GGR+A AY L+ ++W G ARV P+ K A+ RF+P Sbjct: 330 RQGRTGLTNLGNTCFMNSALQCLSHTLPLTRYFLEGPYKEDLNPDNPIGCGGRLAMAYRELIAQLWQGSARVITPREFKFAIGRFAP 416
BLAST of EWM26780.1 vs. NCBI_GenBank
Match: gi|635369505|emb|CCI42292.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 113.235 bits (282), Expect = 9.050e-27 Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 0 Query: 5 RRGSVGLVNLGNTCYLNSAVQCLAHTLPLTRYFLAHRLAEDLNPSSPLGSGGRVARAYERLVKEMWFGEARVCNPQALKAAVTRFSP 91 RRG VGL NLGNTC+LNSA+QCL+H LT YFL+ R +DLN +PLG+GG +A Y L++E+WFG +P ALK A+ RF+P Sbjct: 380 RRGKVGLRNLGNTCFLNSALQCLSHMRLLTDYFLSTRFQQDLNRGNPLGTGGELALVYNELIRELWFGSTSQLSPIALKRAIARFAP 466
BLAST of EWM26780.1 vs. NCBI_GenBank
Match: gi|635369504|emb|CCI42291.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 112.849 bits (281), Expect = 1.176e-26 Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 0 Query: 5 RRGSVGLVNLGNTCYLNSAVQCLAHTLPLTRYFLAHRLAEDLNPSSPLGSGGRVARAYERLVKEMWFGEARVCNPQALKAAVTRFSP 91 RRG VGL NLGNTC+LNSA+QCL+H LT YFL+ R +DLN +PLG+GG +A Y L++E+WFG +P ALK A+ RF+P Sbjct: 380 RRGKVGLRNLGNTCFLNSALQCLSHMRLLTDYFLSTRFQQDLNRGNPLGTGGELALVYNELIRELWFGSTSQLSPIALKRAIARFAP 466
BLAST of EWM26780.1 vs. NCBI_GenBank
Match: gi|635369506|emb|CCI42293.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 112.849 bits (281), Expect = 1.176e-26 Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 0 Query: 5 RRGSVGLVNLGNTCYLNSAVQCLAHTLPLTRYFLAHRLAEDLNPSSPLGSGGRVARAYERLVKEMWFGEARVCNPQALKAAVTRFSP 91 RRG VGL NLGNTC+LNSA+QCL+H LT YFL+ R +DLN +PLG+GG +A Y L++E+WFG +P ALK A+ RF+P Sbjct: 380 RRGKVGLRNLGNTCFLNSALQCLSHMRLLTDYFLSTRFQQDLNRGNPLGTGGELALVYNELIRELWFGSTSQLSPIALKRAIARFAP 466
BLAST of EWM26780.1 vs. NCBI_GenBank
Match: gi|953495185|emb|CEG43092.1| (ubiquitinspecific protease [Plasmopara halstedii]) HSP 1 Score: 112.849 bits (281), Expect = 1.247e-26 Identity = 47/87 (54.02%), Postives = 67/87 (77.01%), Query Frame = 0 Query: 5 RRGSVGLVNLGNTCYLNSAVQCLAHTLPLTRYFLAHRLAEDLNPSSPLGSGGRVARAYERLVKEMWFGEARVCNPQALKAAVTRFSP 91 RRG +GL NLGNTC++NSA+QCL+H LTRYFL+++ +DLNP +PLG+GG +A Y+ L+K++WFG +P LK A++RF+P Sbjct: 306 RRGKMGLRNLGNTCFMNSALQCLSHVEILTRYFLSNKYKKDLNPDNPLGTGGNLAAEYDALLKDLWFGTVPCTSPANLKRAISRFAP 392
BLAST of EWM26780.1 vs. NCBI_GenBank
Match: gi|325182386|emb|CCA16839.1| (ubiquitinspecific protease putative [Albugo laibachii Nc14]) HSP 1 Score: 110.923 bits (276), Expect = 4.852e-26 Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 0 Query: 5 RRGSVGLVNLGNTCYLNSAVQCLAHTLPLTRYFLAHRLAEDLNPSSPLGSGGRVARAYERLVKEMWFGEARVCNPQALKAAVTRFSP 91 RRG VGL NLGNTC+LNSA+QCL+H LT YFL+ R +DLN +PLG+GG +A Y L++E+WFG +P ALK A+ RF+P Sbjct: 381 RRGKVGLRNLGNTCFLNSALQCLSHMHVLTNYFLSTRFQQDLNRDNPLGTGGELALVYNDLIRELWFGSTSQLSPIALKRAIARFAP 467
BLAST of EWM26780.1 vs. NCBI_GenBank
Match: gi|301111055|ref|XP_002904607.1| (ubiquitin-specific protease, putative [Phytophthora infestans T30-4] >gi|262095924|gb|EEY53976.1| ubiquitin-specific protease, putative [Phytophthora infestans T30-4]) HSP 1 Score: 109.768 bits (273), Expect = 1.386e-25 Identity = 48/87 (55.17%), Postives = 66/87 (75.86%), Query Frame = 0 Query: 5 RRGSVGLVNLGNTCYLNSAVQCLAHTLPLTRYFLAHRLAEDLNPSSPLGSGGRVARAYERLVKEMWFGEARVCNPQALKAAVTRFSP 91 RRG +GL NLGNTC++NSA+QCL+H LTRYFL++R +DLN +PLG+GG +A Y+ L+KE+WFG +P LK A++RF+P Sbjct: 310 RRGKMGLRNLGNTCFMNSALQCLSHVELLTRYFLSNRYKKDLNRDNPLGTGGNLAEEYDGLLKELWFGTVPSTSPANLKRAISRFAP 396
BLAST of EWM26780.1 vs. NCBI_GenBank
Match: gi|970651611|gb|KUF90408.1| (Ubiquitin carboxyl-terminal hydrolase [Phytophthora nicotianae]) HSP 1 Score: 108.997 bits (271), Expect = 2.566e-25 Identity = 47/87 (54.02%), Postives = 66/87 (75.86%), Query Frame = 0 Query: 5 RRGSVGLVNLGNTCYLNSAVQCLAHTLPLTRYFLAHRLAEDLNPSSPLGSGGRVARAYERLVKEMWFGEARVCNPQALKAAVTRFSP 91 RRG +GL NLGNTC++NSA+QCL+H LTRYFL+++ +DLN +PLG+GG +A Y+ L+KE+WFG +P LK A++RF+P Sbjct: 314 RRGKMGLRNLGNTCFMNSALQCLSHVELLTRYFLSNQYKKDLNRDNPLGTGGNLAEEYDALLKELWFGTVPSTSPANLKRAISRFAP 400
BLAST of EWM26780.1 vs. NCBI_GenBank
Match: gi|675187701|ref|XP_008902735.1| (hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|566028406|gb|ETI51317.1| hypothetical protein, variant 2 [Phytophthora parasitica P1569] >gi|568023745|gb|ETL97798.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568054152|gb|ETM50953.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568097051|gb|ETN11795.1| hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|570332119|gb|ETO80067.1| hypothetical protein, variant 2 [Phytophthora parasitica P1976]) HSP 1 Score: 108.612 bits (270), Expect = 3.259e-25 Identity = 47/87 (54.02%), Postives = 66/87 (75.86%), Query Frame = 0 Query: 5 RRGSVGLVNLGNTCYLNSAVQCLAHTLPLTRYFLAHRLAEDLNPSSPLGSGGRVARAYERLVKEMWFGEARVCNPQALKAAVTRFSP 91 RRG +GL NLGNTC++NSA+QCL+H LTRYFL+++ +DLN +PLG+GG +A Y+ L+KE+WFG +P LK A++RF+P Sbjct: 96 RRGKMGLRNLGNTCFMNSALQCLSHVELLTRYFLSNQYKKDLNRDNPLGTGGNLAEEYDALLKELWFGTVPSTSPANLKRAISRFAP 182 The following BLAST results are available for this feature:
BLAST of EWM26780.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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