EWM26784.1, cds3860 (CDS) Nannochloropsis gaditana

Overview
NameEWM26784.1
Unique Namecds3860
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:281914..282447 -
Alignment locationCM002462.1:281651..281782 -
Alignment locationCM002462.1:281091..281369 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26784.1
Productubiquitin-conjugating enzyme
Orig transcript idgnl|cribi|Naga_100018g37.2764.mrna
GeneUBC
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:281914..282447 -
CM002462.1supercontigCM002462.1:281651..281782 -
CM002462.1supercontigCM002462.1:281091..281369 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR000608UBQ-conjugat_E2
IPR016135UBQ-conjugating_enzyme/RWD
Homology
BLAST of EWM26784.1 vs. NCBI_GenBank
Match: gi|585108875|gb|EWM26784.1| (ubiquitin-conjugating enzyme [Nannochloropsis gaditana])

HSP 1 Score: 643.269 bits (1658), Expect = 0.000e+0
Identity = 314/314 (100.00%), Postives = 314/314 (100.00%), Query Frame = 0
Query:    1 MSRRASRVKRAGMRDGIPSLSNLVLLWLFLFTAFTRSESHSISSNRCILKSNKAIRARSVLLRRKEETFRVLHPQLPLITLLAQKRGGALQSSSLLGRIMRAWRGSAKRGGSIHGRIKRFLGLLWNAAGSSAGHDVKRSTIRSGSLGGVGGGRLGGNRMQKHLGKEFRRGNANFRVQKELREWLANPTENLQVAVGDNIRVWVVTLTGAKGTIFAGEKYKLKFTFPMDYPSKPPSVYFLQPPPRHEHVYTNGDICLNLLGRDWRPNMTASMLALSILSMLSSAREKKIPQDNHVHADNPPGKEQANWLYHDDRC 314
            MSRRASRVKRAGMRDGIPSLSNLVLLWLFLFTAFTRSESHSISSNRCILKSNKAIRARSVLLRRKEETFRVLHPQLPLITLLAQKRGGALQSSSLLGRIMRAWRGSAKRGGSIHGRIKRFLGLLWNAAGSSAGHDVKRSTIRSGSLGGVGGGRLGGNRMQKHLGKEFRRGNANFRVQKELREWLANPTENLQVAVGDNIRVWVVTLTGAKGTIFAGEKYKLKFTFPMDYPSKPPSVYFLQPPPRHEHVYTNGDICLNLLGRDWRPNMTASMLALSILSMLSSAREKKIPQDNHVHADNPPGKEQANWLYHDDRC
Sbjct:    1 MSRRASRVKRAGMRDGIPSLSNLVLLWLFLFTAFTRSESHSISSNRCILKSNKAIRARSVLLRRKEETFRVLHPQLPLITLLAQKRGGALQSSSLLGRIMRAWRGSAKRGGSIHGRIKRFLGLLWNAAGSSAGHDVKRSTIRSGSLGGVGGGRLGGNRMQKHLGKEFRRGNANFRVQKELREWLANPTENLQVAVGDNIRVWVVTLTGAKGTIFAGEKYKLKFTFPMDYPSKPPSVYFLQPPPRHEHVYTNGDICLNLLGRDWRPNMTASMLALSILSMLSSAREKKIPQDNHVHADNPPGKEQANWLYHDDRC 314          
BLAST of EWM26784.1 vs. NCBI_GenBank
Match: gi|873221734|emb|CEM32784.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 225.713 bits (574), Expect = 4.257e-70
Identity = 94/155 (60.65%), Postives = 124/155 (80.00%), Query Frame = 0
Query:  160 QKHLGKEFRRGNANFRVQKELREWLANPTENLQVAVGDNIRVWVVTLTGAKGTIFAGEKYKLKFTFPMDYPSKPPSVYFLQPPPRHEHVYTNGDICLNLLGRDWRPNMTASMLALSILSMLSSAREKKIPQDNHVHADNPPGKEQANWLYHDDRC 314
            + HL + FR G+ N+R+QKEL+++L  P ++ ++AVG NIRVW++TLTG +GT++ GEKY+LK  FP +YP KPP +YFLQP PRH HVY+NGDICLNLLG DW+P +T + +ALSILSMLSSA+EKK+P DN  HAD   G +Q NW+YHDD+C
Sbjct:   52 KDHLRRSFRPGHVNYRIQKELKDFLTTPPDHCEIAVGSNIRVWIITLTGVEGTLYEGEKYRLKIVFPPEYPLKPPIIYFLQPTPRHPHVYSNGDICLNLLGTDWKPTLTVASVALSILSMLSSAKEKKLPLDNASHADLKAGGQQHNWMYHDDKC 206          
BLAST of EWM26784.1 vs. NCBI_GenBank
Match: gi|298708654|emb|CBJ26141.1| (Ubiquitin-conjugating enzyme [Ectocarpus siliculosus])

HSP 1 Score: 227.639 bits (579), Expect = 2.486e-69
Identity = 118/257 (45.91%), Postives = 166/257 (64.59%), Query Frame = 0
Query:   73 HPQLPLITLLAQKRGGALQSSSLLGRIMRAWRGSAKR-----------GGSIHGRIKRFL-GLLWNAAGSSAGHDVKRSTIRSGSLGGVGGGRLGGNRMQKHLGKEFRRGNANFRVQKELREWLANPTENLQVAVGDNIRVWVVTLTGAKGTIFAGEKYKLKFTFPMDYPSKPPSVYFLQ--PPPRHEHVYTNGDICLNLL-GRDWRPNMTASMLALSILSMLSSAREKKIPQDNHVHADNPPGKEQANWLYHDDRC 314
            H +  L T     RGG+ +  SL    MR      +R           GG +  R+KR + G+     GS       +   ++ +      G+  G     HL K +R GNAN+R+QKEL+E++ANP +  +V+VG NIRVW++T++GA+GTI+AGEK++L+ +FP +YP+KPP+VYFLQ  PPP+H+H+YTNGDICL+LL  RDW+PN+T   LALSILSMLSSA+EK++P+DN  HA+  PG+ Q  W+YHDD C
Sbjct:   62 HGEDALETFALVVRGGSDEDPSLTTLFMRVLMPGFRRDKGGDGELDLEGGGLMRRLKRLVSGVFRKVRGSPVPITEPKGEAKNVATKKKSKGKAKGATTTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQ-QWIYHDDLC 317          
BLAST of EWM26784.1 vs. NCBI_GenBank
Match: gi|56526819|emb|CAH77473.1| (ubiquitin-conjugating enzyme, putative, partial [Plasmodium chabaudi chabaudi])

HSP 1 Score: 208.379 bits (529), Expect = 5.544e-63
Identity = 92/161 (57.14%), Postives = 118/161 (73.29%), Query Frame = 0
Query:  155 GGNRMQKHLGKEFRRGNANFRVQKELREWLANPTENLQVAVG-DNIRVWVVTLTGAKGTIFAGEKYKLKFTFPMDYPSKPPSVYFLQPPPRHEHVYTNGDICLNLLGRDWRPNMTASMLALSILSMLSSAREKKIPQDNHVHADNPPGKEQANWLYHDDRC 314
              N +QKH+  ++  GNAN+R+QKEL  +L NP  N  + V  +NIR+W+V   G + TI+A E YKLK  FP DYP KPP VYFLQ PP+H HVY+NGDICL+LLG D+ P+++ S L LSI+SMLSSA+EKK+P DN+ HAD  PG  Q N+LYHDD+C
Sbjct:   69 SNNNIQKHMRAKYNLGNANYRIQKELHNFLKNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPNDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGNDYNPSLSISGLVLSIISMLSSAKEKKLPIDNYTHADAKPGSSQNNFLYHDDKC 229          
BLAST of EWM26784.1 vs. NCBI_GenBank
Match: gi|68076965|ref|XP_680402.1| (ubiquitin-conjugating enzyme [Plasmodium berghei strain ANKA], partial [Plasmodium berghei ANKA] >gi|56501333|emb|CAH98057.1| ubiquitin-conjugating enzyme, putative, partial [Plasmodium berghei])

HSP 1 Score: 207.608 bits (527), Expect = 8.461e-63
Identity = 91/161 (56.52%), Postives = 118/161 (73.29%), Query Frame = 0
Query:  155 GGNRMQKHLGKEFRRGNANFRVQKELREWLANPTENLQVAVG-DNIRVWVVTLTGAKGTIFAGEKYKLKFTFPMDYPSKPPSVYFLQPPPRHEHVYTNGDICLNLLGRDWRPNMTASMLALSILSMLSSAREKKIPQDNHVHADNPPGKEQANWLYHDDRC 314
              N +QKH+  ++  GNAN+R+QKEL  +L NP  N  + V  +NIR+W+V   G + TI+A E YK+K  FP DYP KPP VYFLQ PP+H HVY+NGDICL+LLG D+ P+++ S L LSI+SMLSSA+EKK+P DN+ HAD  PG  Q N+LYHDD+C
Sbjct:   69 SNNNIQKHMRAKYNLGNANYRIQKELHNFLKNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEAYKIKIIFPNDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGNDYNPSLSISGLVLSIISMLSSAKEKKLPIDNYTHADAKPGSSQNNFLYHDDKC 229          
BLAST of EWM26784.1 vs. NCBI_GenBank
Match: gi|1037138938|emb|SBS87761.1| (ubiquitin-conjugating enzyme E2, putative [Plasmodium malariae])

HSP 1 Score: 206.453 bits (524), Expect = 1.004e-62
Identity = 91/157 (57.96%), Postives = 119/157 (75.80%), Query Frame = 0
Query:  159 MQKHLGKEFRRGNANFRVQKELREWLANPTENLQVAV-GDNIRVWVVTLTGAKGTIFAGEKYKLKFTFPMDYPSKPPSVYFLQPPPRHEHVYTNGDICLNLLGRDWRPNMTASMLALSILSMLSSAREKKIPQDNHVHADNPPGKEQANWLYHDDRC 314
            +QKH+  ++  GNAN+R+QKEL  +L NP  N  + V  +NIR+W+VT TG + TI+A E YK+K  F  DYP KPP+VYFLQ PP+H HVY+NGDICL+LLG D+ P+++ S L LSI+SMLSSA+EKK+P DN+ HAD  PG  Q N+LYHDD+C
Sbjct:   45 VQKHIRTKYNLGNANYRIQKELHNFLKNPPINCTIDVHPNNIRIWIVTYTGLENTIYANEIYKIKIIFSDDYPLKPPTVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLILSIISMLSSAKEKKLPIDNYTHADAKPGSSQNNFLYHDDKC 201          
BLAST of EWM26784.1 vs. NCBI_GenBank
Match: gi|1068927187|emb|SCM13190.1| (ubiquitin-conjugating enzyme E2, putative [Plasmodium chabaudi adami])

HSP 1 Score: 208.764 bits (530), Expect = 1.350e-62
Identity = 92/161 (57.14%), Postives = 118/161 (73.29%), Query Frame = 0
Query:  155 GGNRMQKHLGKEFRRGNANFRVQKELREWLANPTENLQVAVG-DNIRVWVVTLTGAKGTIFAGEKYKLKFTFPMDYPSKPPSVYFLQPPPRHEHVYTNGDICLNLLGRDWRPNMTASMLALSILSMLSSAREKKIPQDNHVHADNPPGKEQANWLYHDDRC 314
              N +QKH+  ++  GNAN+R+QKEL  +L NP  N  + V  +NIR+W+V   G + TI+A E YKLK  FP DYP KPP VYFLQ PP+H HVY+NGDICL+LLG D+ P+++ S L LSI+SMLSSA+EKK+P DN+ HAD  PG  Q N+LYHDD+C
Sbjct:  116 SNNNIQKHMRAKYNLGNANYRIQKELHNFLKNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPSDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGNDYNPSLSISGLVLSIISMLSSAKEKKLPIDNYTHADAKPGSSQNNFLYHDDKC 276          
BLAST of EWM26784.1 vs. NCBI_GenBank
Match: gi|669194992|ref|XP_008622507.1| (ubiquitin-conjugating enzyme E2 W [Plasmodium vinckei vinckei] >gi|657011987|gb|KEG05022.1| ubiquitin-conjugating enzyme E2 W [Plasmodium vinckei vinckei])

HSP 1 Score: 208.764 bits (530), Expect = 1.473e-62
Identity = 92/161 (57.14%), Postives = 118/161 (73.29%), Query Frame = 0
Query:  155 GGNRMQKHLGKEFRRGNANFRVQKELREWLANPTENLQVAVG-DNIRVWVVTLTGAKGTIFAGEKYKLKFTFPMDYPSKPPSVYFLQPPPRHEHVYTNGDICLNLLGRDWRPNMTASMLALSILSMLSSAREKKIPQDNHVHADNPPGKEQANWLYHDDRC 314
              N +QKH+  ++  GNAN+R+QKEL  +L NP  N  + V  +NIR+W+V   G + TI+A E YKLK  FP DYP KPP VYFLQ PP+H HVY+NGDICL+LLG D+ P+++ S L LSI+SMLSSA+EKK+P DN+ HAD  PG  Q N+LYHDD+C
Sbjct:  116 SNNNIQKHMRAKYNLGNANYRIQKELHNFLKNPPINCTLDVHPNNIRIWIVKYIGLENTIYANEVYKLKIIFPNDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGNDYNPSLSISGLVLSIISMLSSAKEKKLPIDNYTHADAKPGSSQNNFLYHDDKC 276          
BLAST of EWM26784.1 vs. NCBI_GenBank
Match: gi|1061789462|emb|SCM06193.1| (ubiquitin-conjugating enzyme E2, putative [Plasmodium chabaudi chabaudi])

HSP 1 Score: 208.764 bits (530), Expect = 1.641e-62
Identity = 92/161 (57.14%), Postives = 118/161 (73.29%), Query Frame = 0
Query:  155 GGNRMQKHLGKEFRRGNANFRVQKELREWLANPTENLQVAVG-DNIRVWVVTLTGAKGTIFAGEKYKLKFTFPMDYPSKPPSVYFLQPPPRHEHVYTNGDICLNLLGRDWRPNMTASMLALSILSMLSSAREKKIPQDNHVHADNPPGKEQANWLYHDDRC 314
              N +QKH+  ++  GNAN+R+QKEL  +L NP  N  + V  +NIR+W+V   G + TI+A E YKLK  FP DYP KPP VYFLQ PP+H HVY+NGDICL+LLG D+ P+++ S L LSI+SMLSSA+EKK+P DN+ HAD  PG  Q N+LYHDD+C
Sbjct:  116 SNNNIQKHMRAKYNLGNANYRIQKELHNFLKNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPNDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGNDYNPSLSISGLVLSIISMLSSAKEKKLPIDNYTHADAKPGSSQNNFLYHDDKC 276          
BLAST of EWM26784.1 vs. NCBI_GenBank
Match: gi|1061794398|emb|SCM11280.1| (ubiquitin-conjugating enzyme E2, putative [Plasmodium chabaudi adami])

HSP 1 Score: 208.764 bits (530), Expect = 1.658e-62
Identity = 92/161 (57.14%), Postives = 118/161 (73.29%), Query Frame = 0
Query:  155 GGNRMQKHLGKEFRRGNANFRVQKELREWLANPTENLQVAVG-DNIRVWVVTLTGAKGTIFAGEKYKLKFTFPMDYPSKPPSVYFLQPPPRHEHVYTNGDICLNLLGRDWRPNMTASMLALSILSMLSSAREKKIPQDNHVHADNPPGKEQANWLYHDDRC 314
              N +QKH+  ++  GNAN+R+QKEL  +L NP  N  + V  +NIR+W+V   G + TI+A E YKLK  FP DYP KPP VYFLQ PP+H HVY+NGDICL+LLG D+ P+++ S L LSI+SMLSSA+EKK+P DN+ HAD  PG  Q N+LYHDD+C
Sbjct:  116 SNNNIQKHMRAKYNLGNANYRIQKELHNFLKNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPNDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGNDYNPSLSISGLVLSIISMLSSAKEKKLPIDNYTHADAKPGSSQNNFLYHDDKC 276          
The following BLAST results are available for this feature:
BLAST of EWM26784.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108875|gb|EWM26784.1|0.000e+0100.00ubiquitin-conjugating enzyme [Nannochloropsis gadi... [more]
gi|873221734|emb|CEM32784.1|4.257e-7060.65unnamed protein product [Vitrella brassicaformis C... [more]
gi|298708654|emb|CBJ26141.1|2.486e-6945.91Ubiquitin-conjugating enzyme [Ectocarpus siliculos... [more]
gi|56526819|emb|CAH77473.1|5.544e-6357.14ubiquitin-conjugating enzyme, putative, partial [P... [more]
gi|68076965|ref|XP_680402.1|8.461e-6356.52ubiquitin-conjugating enzyme [Plasmodium berghei s... [more]
gi|1037138938|emb|SBS87761.1|1.004e-6257.96ubiquitin-conjugating enzyme E2, putative [Plasmod... [more]
gi|1068927187|emb|SCM13190.1|1.350e-6257.14ubiquitin-conjugating enzyme E2, putative [Plasmod... [more]
gi|669194992|ref|XP_008622507.1|1.473e-6257.14ubiquitin-conjugating enzyme E2 W [Plasmodium vinc... [more]
gi|1061789462|emb|SCM06193.1|1.641e-6257.14ubiquitin-conjugating enzyme E2, putative [Plasmod... [more]
gi|1061794398|emb|SCM11280.1|1.658e-6257.14ubiquitin-conjugating enzyme E2, putative [Plasmod... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3869rna3869Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications