EWM26864.1, cds3815 (CDS) Nannochloropsis gaditana

Overview
NameEWM26864.1
Unique Namecds3815
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:146843..146995 -
Alignment locationCM002462.1:146484..146605 -
Alignment locationCM002462.1:145971..146114 -
Alignment locationCM002462.1:145527..145785 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26864.1
Productplastid lipid associated protein
Orig transcript idgnl|cribi|Naga_100097g9.3755.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:146843..146995 -
CM002462.1supercontigCM002462.1:146484..146605 -
CM002462.1supercontigCM002462.1:145971..146114 -
CM002462.1supercontigCM002462.1:145527..145785 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR006843PAP/fibrillin_dom
Homology
BLAST of EWM26864.1 vs. NCBI_GenBank
Match: gi|585108959|gb|EWM26864.1| (plastid lipid associated protein [Nannochloropsis gaditana])

HSP 1 Score: 453.751 bits (1166), Expect = 2.158e-161
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0
Query:    1 MSVLVARRQLFLLVLLLIFLLLTPVVTHGFNFFPTRSSAGTAVKAGGPVSKIKTELLRKAEEVSRGLEASQEQQESILALIKSLEKKNPTKSPTSSALITARWRLVFTTSESILGKTRPAVFRPVGPIYQYINLARGTARNEEQIRPIPFLPAIEEAIDATIEPVSSQRVNVFFQRLFLGPLNFKFQSENYLDTTYLDKDMRISRSGFIFYRPLLRSSSCCVLCF 225
            MSVLVARRQLFLLVLLLIFLLLTPVVTHGFNFFPTRSSAGTAVKAGGPVSKIKTELLRKAEEVSRGLEASQEQQESILALIKSLEKKNPTKSPTSSALITARWRLVFTTSESILGKTRPAVFRPVGPIYQYINLARGTARNEEQIRPIPFLPAIEEAIDATIEPVSSQRVNVFFQRLFLGPLNFKFQSENYLDTTYLDKDMRISRSGFIFYRPLLRSSSCCVLCF
Sbjct:    1 MSVLVARRQLFLLVLLLIFLLLTPVVTHGFNFFPTRSSAGTAVKAGGPVSKIKTELLRKAEEVSRGLEASQEQQESILALIKSLEKKNPTKSPTSSALITARWRLVFTTSESILGKTRPAVFRPVGPIYQYINLARGTARNEEQIRPIPFLPAIEEAIDATIEPVSSQRVNVFFQRLFLGPLNFKFQSENYLDTTYLDKDMRISRSGFIFYRPLLRSSSCCVLCF 225          
BLAST of EWM26864.1 vs. NCBI_GenBank
Match: gi|760439905|ref|XP_011397021.1| (putative plastid-lipid-associated protein 4, chloroplastic, partial [Auxenochlorella protothecoides] >gi|675351695|gb|KFM24135.1| putative plastid-lipid-associated protein 4, chloroplastic, partial [Auxenochlorella protothecoides])

HSP 1 Score: 116.316 bits (290), Expect = 4.920e-29
Identity = 64/160 (40.00%), Postives = 94/160 (58.75%), Query Frame = 0
Query:   50 SKIKTELLRKAEEVSRGLEASQEQQESILALIKSLEKKNPTKSPTSSALITARWRLVFTTSESILGKTRPAVFRPVGPIYQYINLARGTARNEEQIRPIPFLPAIEEAIDATIEPVSSQRVNVFFQRLFLG---PLNFKFQSENYLDTTYLDKDMRISRS 206
            + ++T+LL   E + RGL A+    E I  L+  LE +NPT +P +S L+  +W L++TTS+SILG++RP+  RP GPIYQ ++      +N E     P   A+E    A +EP+S   V V F+R +L    P+     +   LDTTYLD+D+RISR 
Sbjct:   11 AHLQTQLLEAIEPLQRGLTATPSDVERIEGLVVELEGRNPTAAPVNSPLLNGQWELLYTTSDSILGRSRPSFLRPKGPIYQTLDNESLRGKNRET---TPLFNAVE----AELEPISDSEVAVQFKRFWLAGFIPVPAPASARGRLDTTYLDEDLRISRG 163          
BLAST of EWM26864.1 vs. NCBI_GenBank
Match: gi|545375557|ref|XP_005651947.1| (plastid fibrillin 3 [Coccomyxa subellipsoidea C-169] >gi|384253929|gb|EIE27403.1| plastid fibrillin 3 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 106.301 bits (264), Expect = 2.917e-25
Identity = 63/155 (40.65%), Postives = 89/155 (57.42%), Query Frame = 0
Query:   55 ELLRKAEEVSRGLEASQEQQESILALIKSLEKKNPTKSPTSSALITARWRLVFTTSESILGKTRPAVFRPVGPIYQYINLARGTARNEEQIRPIPFLPAIEEAIDATIEPVSSQRVNVFFQR---LFLGPLNFKFQSENYLDTTYLDKDMRISRS 206
            +LL     + RG  AS  ++  +  L + LE+ NP K   +S L++A+WRL++TTS SILG T+P   RP GPIYQ I+    TA+N+E     PF       + AT+ P ++ RV V F+    L L P+     +   LDTTYLD+D+RISR 
Sbjct:    6 QLLELISRLDRGASASTSEKSEVDQLAQKLERVNPNKKALASPLLSAKWRLLYTTSASILGTTKPPFLRPQGPIYQTIDAQNLTAQNQET---WPFF----NQVKATLTPETASRVAVQFREFKILGLIPVKAPPSARGKLDTTYLDEDLRISRG 153          
BLAST of EWM26864.1 vs. NCBI_GenBank
Match: gi|302766329|ref|XP_002966585.1| (hypothetical protein SELMODRAFT_85410 [Selaginella moellendorffii] >gi|300166005|gb|EFJ32612.1| hypothetical protein SELMODRAFT_85410 [Selaginella moellendorffii])

HSP 1 Score: 105.531 bits (262), Expect = 9.622e-25
Identity = 64/163 (39.26%), Postives = 90/163 (55.21%), Query Frame = 0
Query:   47 GPVSKIKTELLRKAEEVSRGLEASQEQQESILALIKSLEKKNPTKSPTSSALITARWRLVFTTSESILGKTRPAVFRPVGPIYQYINLARGTARNEEQIRPIPFLPAIEEAIDATIEPVSSQRVNV---FFQRLFLGPLNFKFQSENYLDTTYLDKDMRISRS 206
            G    +K ELL + E + RG  A+++ +  I  L + LE  NPTK+P  S L+  +W L++TTS+SIL   RP + RP GPIYQ IN     A+N E     PF       + A + P SS +V V   FF+   L P+    ++   LD TYLD+D+R+SR 
Sbjct:   17 GDKDAVKKELLSEIEPLDRGAAATEDDRMRIDKLAQKLEALNPTKAPLKSPLLNGKWELLYTTSQSILKSNRPKLLRPNGPIYQAINNDTLRAQNLET---WPFF----NQVTANLTPASSSKVVVNFDFFKIAGLIPIKAPGRARGELDVTYLDEDLRVSRG 172          
BLAST of EWM26864.1 vs. NCBI_GenBank
Match: gi|552826874|ref|XP_005847116.1| (hypothetical protein CHLNCDRAFT_134838 [Chlorella variabilis] >gi|307106769|gb|EFN55014.1| hypothetical protein CHLNCDRAFT_134838 [Chlorella variabilis])

HSP 1 Score: 105.145 bits (261), Expect = 1.149e-24
Identity = 63/161 (39.13%), Postives = 89/161 (55.28%), Query Frame = 0
Query:   49 VSKIKTELLRKAEEVSRGLEASQEQQESILALIKSLEKKNPTKSPTSSALITARWRLVFTTSESILGKTRPAVFRPVGPIYQYINLARGTARNEEQIRPIPFLPAIEEAIDATIEPVSSQRVNVFFQR---LFLGPLNFKFQSENYLDTTYLDKDMRISRS 206
            V++ K ELL     + RGL A+ E ++ +  L   LE+ NPTK P +S LI  +W L++TTS+SILG ++PA  RP GPIYQ I+    TARN+E     P        + A + P S  +V V F+    L L P+     +   L  TYLD ++R+SR 
Sbjct:   15 VAEAKQELLEAIAPLKRGLTATDEDRQQVERLASKLERMNPTKRPLASDLINGQWELLYTTSDSILGMSKPAFLRPSGPIYQVIDAKALTARNKET---APLF----NQVSAELIPESDSKVKVQFKEFKILGLVPIKAPPSAVGELAVTYLDDELRVSRG 168          
BLAST of EWM26864.1 vs. NCBI_GenBank
Match: gi|298710568|emb|CBJ31999.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 106.301 bits (264), Expect = 1.318e-24
Identity = 62/155 (40.00%), Postives = 89/155 (57.42%), Query Frame = 0
Query:   53 KTELLRKAEEVSRGLEASQEQQESILALIKSLEKKNPTKSPTSSALITARWRLVFTTSESILGKTRPAVFRPVGPIYQYINLARGTARNEEQIRPIPFLPAIEEAIDATIEPVSSQRVNVFFQRLFLGPLNFKF--QSENYLDTTYLDKDMRISR 205
            K ELL     + RGL AS E +  +  L + +EK NP     SS L+  RW LV+TTS SIL K  P V RP GPIYQ I+     A N + I+PIPFL  +   + A + P +S   +V F+   +GPL  K   ++++ +D TY+D ++R++R
Sbjct:   65 KQELLDAIVPLKRGLTASDEDKAVVEKLAQKVEKLNPNPKSLSSPLVNGRWELVYTTSMSILSKKNP-VMRPSGPIYQDIDAPGLRALNAQYIQPIPFL-KMPYQVSAELTPTTSSATDVQFKEFTVGPLKIKAPERAQSAIDITYVDDEVRVTR 217          
BLAST of EWM26864.1 vs. NCBI_GenBank
Match: gi|302801331|ref|XP_002982422.1| (hypothetical protein SELMODRAFT_116147 [Selaginella moellendorffii] >gi|300150014|gb|EFJ16667.1| hypothetical protein SELMODRAFT_116147 [Selaginella moellendorffii])

HSP 1 Score: 105.145 bits (261), Expect = 1.693e-24
Identity = 64/163 (39.26%), Postives = 90/163 (55.21%), Query Frame = 0
Query:   47 GPVSKIKTELLRKAEEVSRGLEASQEQQESILALIKSLEKKNPTKSPTSSALITARWRLVFTTSESILGKTRPAVFRPVGPIYQYINLARGTARNEEQIRPIPFLPAIEEAIDATIEPVSSQRVNV---FFQRLFLGPLNFKFQSENYLDTTYLDKDMRISRS 206
            G    +K ELL + E + RG  A+++ +  I  L + LE  NPTK+P  S L+  +W L++TTS+SIL   RP + RP GPIYQ IN     A+N E     PF       + A + P SS +V V   FF+   L P+    ++   LD TYLD+D+R+SR 
Sbjct:   17 GDKDAVKKELLSEIEPLDRGAAATEDDRMRIDKLAQKLEALNPTKAPLKSPLLNGKWELLYTTSQSILKSNRPKLLRPNGPIYQAINNDTLRAQNLET---WPFF----NQVTANLTPSSSSKVVVNFDFFKIAGLIPIKAPGRARGELDVTYLDEDLRVSRG 172          
BLAST of EWM26864.1 vs. NCBI_GenBank
Match: gi|1179541464|ref|XP_020691680.1| (probable plastid-lipid-associated protein 4, chloroplastic [Dendrobium catenatum])

HSP 1 Score: 103.219 bits (256), Expect = 3.768e-23
Identity = 59/158 (37.34%), Postives = 90/158 (56.96%), Query Frame = 0
Query:   52 IKTELLRKAEEVSRGLEASQEQQESILALIKSLEKKNPTKSPTSSALITARWRLVFTTSESILGKTRPAVFRPVGPIYQYINLARGTARNEEQIRPIPFLPAIEEAIDATIEPVSSQRVNVFFQRLFLG---PLNFKFQSENYLDTTYLDKDMRISRS 206
            +K ELL+   E+ RG EA+ E+QE +  + + LE  NP   P  S L+  +W L++TTS+SIL   RP +FRP G IYQ IN     A+N   I   P+       + A + P++++RV V F R  +G   P+    ++   L+ TYLD+++R+SR 
Sbjct:   83 VKLELLKAIAELDRGAEATSEEQERVDQIARELEAVNPITEPLKSDLLNGKWELLYTTSKSILQPQRPKIFRPFGKIYQAINADTLRAQN---IETWPYF----NQVTANLVPLNARRVAVKFDRFKIGGLIPIVAPGRARGELEITYLDEEIRVSRG 233          
BLAST of EWM26864.1 vs. NCBI_GenBank
Match: gi|1210182295|dbj|BAZ01356.1| (PAP fibrillin family protein [Tolypothrix tenuis PCC 7101] >gi|1210255719|dbj|BAZ74721.1| PAP fibrillin family protein [Aulosira laxa NIES-50])

HSP 1 Score: 101.679 bits (252), Expect = 3.843e-23
Identity = 67/182 (36.81%), Postives = 99/182 (54.40%), Query Frame = 0
Query:   53 KTELLRKAEEVSRGLEASQEQQESILALIKSLEKKNPTKSPT-SSALITARWRLVFTTSESILGKTRPAVFRPVGPIYQYINLARGTARNEEQIRPIPFLPAIEEAIDATIEPVSSQRVNVFFQRLFLG---------PLNF--------KF----------QSENYLDTTYLDKDMRISRS 206
            KT LL      +RGL AS++Q+++ILA I +LE  NPT  P  +S+L+   WRL++TTS+++L   R   F+ +G IYQYI +   +  N  +I  +P+L  +  ++ A  EP+S +RV V F R  +G         P NF        KF          + + +LD TYLDKD+RI R 
Sbjct:    4 KTALLDAIAGTNRGLLASEKQKQAILAAIATLEDLNPTPLPVEASSLLDGNWRLIYTTSKALLNLDRLPFFK-LGQIYQYIRVENTSVYNIAEIYGLPYLEGL-VSVAAKFEPLSGRRVQVKFNRSIIGWQRLLGYNSPENFIQEIEAGSKFTAIDTAINSDRQQGWLDITYLDKDLRIGRG 183          
BLAST of EWM26864.1 vs. NCBI_GenBank
Match: gi|1189381988|gb|OSX69588.1| (hypothetical protein BU14_1367s0002 [Porphyra umbilicalis])

HSP 1 Score: 102.834 bits (255), Expect = 4.009e-23
Identity = 60/162 (37.04%), Postives = 89/162 (54.94%), Query Frame = 0
Query:   48 PVSKIKTELLRK--AEEVSRGLEASQEQQESILALIKSLEKKNPTKSPTSSALITARWRLVFTTSESILGKTRPAVFRPVGPIYQYINLARGTARNEEQIRPIPFLPAIEEAIDATIEPVSSQRVNVFFQRLFLGPLNFK--FQSENYLDTTYLDKDMRISR 205
            P + +K EL+    +  + R + + +  QE I A+++ LE  NPT  P  SA + A W+LV+TTS SILG +RP   RP   I+Q +++  GT  N EQ+        +   + AT       RV V FQR   GPL+ K    ++ +LD TYLD ++R+SR
Sbjct:   63 PTTAVKAELMTAIASTRLGRSVASDRRAQEKIDAIVRRLEALNPTPVPVESAELGAVWKLVYTTSASILGTSRPPPLRPNDEIFQSVDVGAGTITNSEQL----AGGLLTNKVHATFGVKPPMRVQVQFQRFQFGPLSVKAPASAKGFLDVTYLDDEVRVSR 220          
The following BLAST results are available for this feature:
BLAST of EWM26864.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108959|gb|EWM26864.1|2.158e-161100.00plastid lipid associated protein [Nannochloropsis ... [more]
gi|760439905|ref|XP_011397021.1|4.920e-2940.00putative plastid-lipid-associated protein 4, chlor... [more]
gi|545375557|ref|XP_005651947.1|2.917e-2540.65plastid fibrillin 3 [Coccomyxa subellipsoidea C-16... [more]
gi|302766329|ref|XP_002966585.1|9.622e-2539.26hypothetical protein SELMODRAFT_85410 [Selaginella... [more]
gi|552826874|ref|XP_005847116.1|1.149e-2439.13hypothetical protein CHLNCDRAFT_134838 [Chlorella ... [more]
gi|298710568|emb|CBJ31999.1|1.318e-2440.00conserved unknown protein [Ectocarpus siliculosus][more]
gi|302801331|ref|XP_002982422.1|1.693e-2439.26hypothetical protein SELMODRAFT_116147 [Selaginell... [more]
gi|1179541464|ref|XP_020691680.1|3.768e-2337.34probable plastid-lipid-associated protein 4, chlor... [more]
gi|1210182295|dbj|BAZ01356.1|3.843e-2336.81PAP fibrillin family protein [Tolypothrix tenuis P... [more]
gi|1189381988|gb|OSX69588.1|4.009e-2337.04hypothetical protein BU14_1367s0002 [Porphyra umbi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3824rna3824Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications