EWM26869.1, cds3804 (CDS) Nannochloropsis gaditana

Overview
NameEWM26869.1
Unique Namecds3804
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:118808..119046 +
Alignment locationCM002462.1:119166..119247 +
Alignment locationCM002462.1:119495..119606 +
Alignment locationCM002462.1:119814..119913 +
Alignment locationCM002462.1:120187..120193 +
Alignment locationCM002462.1:120247..120288 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26869.1
Productglutamate synthase
Orig transcript idgnl|cribi|Naga_101084g1.8480.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:118808..119046 +
CM002462.1supercontigCM002462.1:119166..119247 +
CM002462.1supercontigCM002462.1:119495..119606 +
CM002462.1supercontigCM002462.1:119814..119913 +
CM002462.1supercontigCM002462.1:120187..120193 +
CM002462.1supercontigCM002462.1:120247..120288 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0051536iron-sulfur cluster binding
Vocabulary: INTERPRO
TermDefinition
IPR009051Helical_ferredxn
Homology
BLAST of EWM26869.1 vs. NCBI_GenBank
Match: gi|585108967|gb|EWM26869.1| (glutamate synthase [Nannochloropsis gaditana])

HSP 1 Score: 398.282 bits (1022), Expect = 2.159e-140
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0
Query:    1 MPRTPVFPRICFLRPACSPLGCGSIPRPRLRLLHVKTRRQAFSLRGKRKHLEMLSASRNHLTRCLRTAVAARQVSVRQFHPSASRLGGSITRHEVWRDDNEQDNLPKVKRRDGSIAAIEKKRGFVDYHRNPDPYRDPLDRVFDWGEIKTDEGHDEVERKVQAARCMDCGTPFCQTHTGCPGGDRPAAQDQQLP 193
            MPRTPVFPRICFLRPACSPLGCGSIPRPRLRLLHVKTRRQAFSLRGKRKHLEMLSASRNHLTRCLRTAVAARQVSVRQFHPSASRLGGSITRHEVWRDDNEQDNLPKVKRRDGSIAAIEKKRGFVDYHRNPDPYRDPLDRVFDWGEIKTDEGHDEVERKVQAARCMDCGTPFCQTHTGCPGGDRPAAQDQQLP
Sbjct:    1 MPRTPVFPRICFLRPACSPLGCGSIPRPRLRLLHVKTRRQAFSLRGKRKHLEMLSASRNHLTRCLRTAVAARQVSVRQFHPSASRLGGSITRHEVWRDDNEQDNLPKVKRRDGSIAAIEKKRGFVDYHRNPDPYRDPLDRVFDWGEIKTDEGHDEVERKVQAARCMDCGTPFCQTHTGCPGGDRPAAQDQQLP 193          
BLAST of EWM26869.1 vs. NCBI_GenBank
Match: gi|676382599|ref|XP_009034578.1| (hypothetical protein AURANDRAFT_52709 [Aureococcus anophagefferens] >gi|323455150|gb|EGB11019.1| hypothetical protein AURANDRAFT_52709 [Aureococcus anophagefferens])

HSP 1 Score: 157.918 bits (398), Expect = 4.216e-42
Identity = 74/121 (61.16%), Postives = 87/121 (71.90%), Query Frame = 0
Query:   61 LTRCLRTAVAARQVSVRQFHPSASRLGG-SITRHEVWRDDNEQDNLPKVKRRDGSIAAIEKKRGFVDYHRNPDPYRDPLDRVFDWGEIKTDEGHDEVERKVQAARCMDCGTPFCQTHTGCP 180
            +T    +  A R    R   P A   G  S + HE++R D++ DNLPKVKRRDGS+  I+ KR FVDY RNP+PYR+PL+RV DWGEI   +GHDEVER VQAARCMDCGTPFCQTHTGCP
Sbjct:    1 MTVLASSRSALRHAFARAGAPVARGSGALSTSSHEIFRGDDDHDNLPKVKRRDGSVDVIDNKRAFVDYERNPEPYREPLERVLDWGEINAQDGHDEVERTVQAARCMDCGTPFCQTHTGCP 121          
BLAST of EWM26869.1 vs. NCBI_GenBank
Match: gi|298710244|emb|CBJ26319.1| (Glutamate synthase (NADH/NADPH-dependent) [Ectocarpus siliculosus])

HSP 1 Score: 152.91 bits (385), Expect = 3.632e-40
Identity = 68/90 (75.56%), Postives = 76/90 (84.44%), Query Frame = 0
Query:   92 RHEVWRDDNEQ-DNLPKVKRRDGSIAAIEKKRGFVDYHRNPDPYRDPLDRVFDWGEIKTDEGHDEVERKVQAARCMDCGTPFCQTHTGCP 180
             HE+WRD ++  DN PKVKRRDG+   I+K RGF+DY+RNPDPYRDPL+RVFDWGEI  D  HDEVER VQAARCMDCGTPFCQTHTGCP
Sbjct:   34 NHEIWRDQSDTTDNTPKVKRRDGTFGNIDKTRGFIDYYRNPDPYRDPLERVFDWGEIN-DASHDEVERTVQAARCMDCGTPFCQTHTGCP 122          
BLAST of EWM26869.1 vs. NCBI_GenBank
Match: gi|397642811|gb|EJK75472.1| (hypothetical protein THAOC_02804 [Thalassiosira oceanica])

HSP 1 Score: 142.124 bits (357), Expect = 3.498e-36
Identity = 75/133 (56.39%), Postives = 91/133 (68.42%), Query Frame = 0
Query:   54 LSASRNHLTRCLRTAVAARQVSVRQFHPSASRLGGSITRHEVWRDD-NEQDNLPKVKRRDGSIAAIEKKRGFVDYHRNPDPYRDPLDRVFDWGEIKTDEG-----HDEVERKVQAARCMDCGTPFCQTHTGCP 180
            + A+R   T   R+  AAR +S +    S+S + GS  RHE+WR+   + DN PKVKRRDGS   IEK RGF++Y RN +PYRDP  RV DWGE+   EG     H E+ERK+QAARCMDCGTPFCQTHTGCP
Sbjct:    1 MLAARRKATNIARSH-AARSLSTKV---SSSNVLGSDGRHEIWREGIYDHDNEPKVKRRDGSYQPIEKLRGFINYSRNKEPYRDPSKRVLDWGELNPVEGRDEEKHTEIERKIQAARCMDCGTPFCQTHTGCP 129          
BLAST of EWM26869.1 vs. NCBI_GenBank
Match: gi|219118705|ref|XP_002180120.1| (synthase of glutamate synthase [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408377|gb|EEC48311.1| synthase of glutamate synthase [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 136.346 bits (342), Expect = 5.111e-34
Identity = 63/98 (64.29%), Postives = 76/98 (77.55%), Query Frame = 0
Query:   88 GSITRHEVWRDD-NEQDNLPKVKRRDGSIAAIEKKRGFVDYHRNPDPYRDPLDRVFDWGEIKTDEG----HDEVERKVQAARCMDCGTPFCQTHTGCP 180
            G   RHE+WR+   + DN PK+KRRDGS ++IEK RGF++Y RNP+PYR PL+RV DWGE+   E     H ++ERKVQAARCMDCGTPFCQTHTGCP
Sbjct:   35 GEDGRHEIWREGIYDHDNEPKIKRRDGSYSSIEKLRGFLNYERNPEPYRKPLERVMDWGELNPTEEDELHHTDLERKVQAARCMDCGTPFCQTHTGCP 132          
BLAST of EWM26869.1 vs. NCBI_GenBank
Match: gi|1210529990|dbj|GAX11523.1| (glutamate synthase (NADPH/NADH) small chain [Fistulifera solaris])

HSP 1 Score: 135.191 bits (339), Expect = 1.216e-33
Identity = 71/136 (52.21%), Postives = 88/136 (64.71%), Query Frame = 0
Query:   53 MLSASRNHLTRCLRTAVAARQVSVRQFHPSASRLG--GSITRHEVWRD--DNEQDNLPKVKRRDGSIAAIEKKRGFVDYHRNPDPYRDPLDRVFDWGEI----KTDEGHDEVERKVQAARCMDCGTPFCQTHTGCP 180
            ML+A    L    RT        +R+      + G  G+  RHE+WR+   ++ DN P+VKRRDGS A+IEK RGF++Y RNP+PYR P +RV DWGE+    +  E H  VERKVQAARCMDCGTPFCQTH GCP
Sbjct:    1 MLAARTQRLVASSRT--------LRKLSTQIEKAGPLGADGRHEIWREGQSSDHDNEPRVKRRDGSYASIEKLRGFLNYQRNPEPYRKPTERVRDWGELNPTEEDSEYHTSVERKVQAARCMDCGTPFCQTHAGCP 128          
BLAST of EWM26869.1 vs. NCBI_GenBank
Match: gi|1210525177|dbj|GAX15936.1| (glutamate synthase (NADPH/NADH) small chain [Fistulifera solaris])

HSP 1 Score: 134.42 bits (337), Expect = 2.438e-33
Identity = 63/99 (63.64%), Postives = 76/99 (76.77%), Query Frame = 0
Query:   88 GSITRHEVWRD--DNEQDNLPKVKRRDGSIAAIEKKRGFVDYHRNPDPYRDPLDRVFDWGEI----KTDEGHDEVERKVQAARCMDCGTPFCQTHTGCP 180
            G+  RHE+WR+   ++ DN P+VKRRDGS A+IEK RGF++Y RNP+PYR P +RV DWGE+    +  E H  VERKVQAARCMDCGTPFCQTH GCP
Sbjct:   30 GADGRHEIWREGQSSDHDNEPRVKRRDGSYASIEKLRGFLNYQRNPEPYRKPTERVRDWGELNPTEEDSEYHTSVERKVQAARCMDCGTPFCQTHAGCP 128          
BLAST of EWM26869.1 vs. NCBI_GenBank
Match: gi|1072232368|gb|OEU17099.1| (hypothetical protein FRACYDRAFT_260715 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 116.316 bits (290), Expect = 5.368e-27
Identity = 67/138 (48.55%), Postives = 84/138 (60.87%), Query Frame = 0
Query:   58 RNHLTRCLR-TAVAARQVSVRQFHPSASRLGGSIT---RHEV-----WRDDNEQDNLPKVKRRDGSIAAIEKKRGFVDYHRNPDPYRDPLDRVFDWGEIK------TDEGHDEVERKVQAARCMDCGTPFCQTHTGCP 180
            RN L R  R TA+ AR V  +      S + G I    RHE+     +  D+E     KV+RRDGS+  +EK RGF++Y RNP+PYR PL+R+ DW EI        D  H  +E KVQAARCMDCGTPFCQT++GCP
Sbjct:    4 RNILGRSNRCTAILARAVRTQSTQVEKSSVKGPIATDGRHEIDHAVDYEHDSES---VKVRRRDGSMQNVEKLRGFLNYQRNPEPYRPPLERLQDWEEINPVPDRDVDVAHTALELKVQAARCMDCGTPFCQTYSGCP 138          
BLAST of EWM26869.1 vs. NCBI_GenBank
Match: gi|675206651|ref|XP_008912210.1| (hypothetical protein PPTG_16429 [Phytophthora parasitica INRA-310] >gi|566014142|gb|ETI37053.1| hypothetical protein F443_16928 [Phytophthora parasitica P1569] >gi|567951577|gb|ETK77275.1| hypothetical protein L915_16457 [Phytophthora parasitica] >gi|567980245|gb|ETL30713.1| hypothetical protein L916_16356 [Phytophthora parasitica] >gi|568009741|gb|ETL83939.1| hypothetical protein L917_16180 [Phytophthora parasitica] >gi|568039653|gb|ETM37135.1| hypothetical protein L914_16287 [Phytophthora parasitica] >gi|568087607|gb|ETN02476.1| hypothetical protein PPTG_16429 [Phytophthora parasitica INRA-310] >gi|570317837|gb|ETO65785.1| hypothetical protein F444_16951 [Phytophthora parasitica P1976] >gi|570941656|gb|ETP06913.1| hypothetical protein F441_16771 [Phytophthora parasitica CJ01A1] >gi|970631205|gb|KUF77895.1| Glutamate synthase 2 [Phytophthora nicotianae])

HSP 1 Score: 99.3673 bits (246), Expect = 6.755e-21
Identity = 45/75 (60.00%), Postives = 54/75 (72.00%), Query Frame = 0
Query:  106 PKVKRRDGSIAAIEKKRGFVDYHRNPDPYRDPLDRVFDWGEIKTDEGHDEVERKVQAARCMDCGTPFCQTHTGCP 180
            P   +RDGS   I+  R F+++ R PDPYRD  +RV DW EI T    D +ERK+QAARCMDCGTPFCQT+TGCP
Sbjct:   32 PVFDKRDGSKGEIDSARAFIEFKREPDPYRDVEERVHDWNEINTPR-RDPIERKIQAARCMDCGTPFCQTNTGCP 105          
BLAST of EWM26869.1 vs. NCBI_GenBank
Match: gi|570971936|gb|ETP34989.1| (hypothetical protein F442_16769 [Phytophthora parasitica P10297])

HSP 1 Score: 99.3673 bits (246), Expect = 7.303e-21
Identity = 45/75 (60.00%), Postives = 54/75 (72.00%), Query Frame = 0
Query:  106 PKVKRRDGSIAAIEKKRGFVDYHRNPDPYRDPLDRVFDWGEIKTDEGHDEVERKVQAARCMDCGTPFCQTHTGCP 180
            P   +RDGS   I+  R F+++ R PDPYRD  +RV DW EI T    D +ERK+QAARCMDCGTPFCQT+TGCP
Sbjct:   32 PVFDKRDGSKGEIDSARAFIEFKREPDPYRDVEERVHDWNEINTPR-RDPIERKIQAARCMDCGTPFCQTNTGCP 105          
The following BLAST results are available for this feature:
BLAST of EWM26869.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108967|gb|EWM26869.1|2.159e-140100.00glutamate synthase [Nannochloropsis gaditana][more]
gi|676382599|ref|XP_009034578.1|4.216e-4261.16hypothetical protein AURANDRAFT_52709 [Aureococcus... [more]
gi|298710244|emb|CBJ26319.1|3.632e-4075.56Glutamate synthase (NADH/NADPH-dependent) [Ectocar... [more]
gi|397642811|gb|EJK75472.1|3.498e-3656.39hypothetical protein THAOC_02804 [Thalassiosira oc... [more]
gi|219118705|ref|XP_002180120.1|5.111e-3464.29synthase of glutamate synthase [Phaeodactylum tric... [more]
gi|1210529990|dbj|GAX11523.1|1.216e-3352.21glutamate synthase (NADPH/NADH) small chain [Fistu... [more]
gi|1210525177|dbj|GAX15936.1|2.438e-3363.64glutamate synthase (NADPH/NADH) small chain [Fistu... [more]
gi|1072232368|gb|OEU17099.1|5.368e-2748.55hypothetical protein FRACYDRAFT_260715 [Fragilario... [more]
gi|675206651|ref|XP_008912210.1|6.755e-2160.00hypothetical protein PPTG_16429 [Phytophthora para... [more]
gi|570971936|gb|ETP34989.1|7.303e-2160.00hypothetical protein F442_16769 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3813rna3813Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications