EWM26869.1, cds3804 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26869.1 vs. NCBI_GenBank
Match: gi|585108967|gb|EWM26869.1| (glutamate synthase [Nannochloropsis gaditana]) HSP 1 Score: 398.282 bits (1022), Expect = 2.159e-140 Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0
Query: 1 MPRTPVFPRICFLRPACSPLGCGSIPRPRLRLLHVKTRRQAFSLRGKRKHLEMLSASRNHLTRCLRTAVAARQVSVRQFHPSASRLGGSITRHEVWRDDNEQDNLPKVKRRDGSIAAIEKKRGFVDYHRNPDPYRDPLDRVFDWGEIKTDEGHDEVERKVQAARCMDCGTPFCQTHTGCPGGDRPAAQDQQLP 193
MPRTPVFPRICFLRPACSPLGCGSIPRPRLRLLHVKTRRQAFSLRGKRKHLEMLSASRNHLTRCLRTAVAARQVSVRQFHPSASRLGGSITRHEVWRDDNEQDNLPKVKRRDGSIAAIEKKRGFVDYHRNPDPYRDPLDRVFDWGEIKTDEGHDEVERKVQAARCMDCGTPFCQTHTGCPGGDRPAAQDQQLP
Sbjct: 1 MPRTPVFPRICFLRPACSPLGCGSIPRPRLRLLHVKTRRQAFSLRGKRKHLEMLSASRNHLTRCLRTAVAARQVSVRQFHPSASRLGGSITRHEVWRDDNEQDNLPKVKRRDGSIAAIEKKRGFVDYHRNPDPYRDPLDRVFDWGEIKTDEGHDEVERKVQAARCMDCGTPFCQTHTGCPGGDRPAAQDQQLP 193
BLAST of EWM26869.1 vs. NCBI_GenBank
Match: gi|676382599|ref|XP_009034578.1| (hypothetical protein AURANDRAFT_52709 [Aureococcus anophagefferens] >gi|323455150|gb|EGB11019.1| hypothetical protein AURANDRAFT_52709 [Aureococcus anophagefferens]) HSP 1 Score: 157.918 bits (398), Expect = 4.216e-42 Identity = 74/121 (61.16%), Postives = 87/121 (71.90%), Query Frame = 0
Query: 61 LTRCLRTAVAARQVSVRQFHPSASRLGG-SITRHEVWRDDNEQDNLPKVKRRDGSIAAIEKKRGFVDYHRNPDPYRDPLDRVFDWGEIKTDEGHDEVERKVQAARCMDCGTPFCQTHTGCP 180
+T + A R R P A G S + HE++R D++ DNLPKVKRRDGS+ I+ KR FVDY RNP+PYR+PL+RV DWGEI +GHDEVER VQAARCMDCGTPFCQTHTGCP
Sbjct: 1 MTVLASSRSALRHAFARAGAPVARGSGALSTSSHEIFRGDDDHDNLPKVKRRDGSVDVIDNKRAFVDYERNPEPYREPLERVLDWGEINAQDGHDEVERTVQAARCMDCGTPFCQTHTGCP 121
BLAST of EWM26869.1 vs. NCBI_GenBank
Match: gi|298710244|emb|CBJ26319.1| (Glutamate synthase (NADH/NADPH-dependent) [Ectocarpus siliculosus]) HSP 1 Score: 152.91 bits (385), Expect = 3.632e-40 Identity = 68/90 (75.56%), Postives = 76/90 (84.44%), Query Frame = 0
Query: 92 RHEVWRDDNEQ-DNLPKVKRRDGSIAAIEKKRGFVDYHRNPDPYRDPLDRVFDWGEIKTDEGHDEVERKVQAARCMDCGTPFCQTHTGCP 180
HE+WRD ++ DN PKVKRRDG+ I+K RGF+DY+RNPDPYRDPL+RVFDWGEI D HDEVER VQAARCMDCGTPFCQTHTGCP
Sbjct: 34 NHEIWRDQSDTTDNTPKVKRRDGTFGNIDKTRGFIDYYRNPDPYRDPLERVFDWGEIN-DASHDEVERTVQAARCMDCGTPFCQTHTGCP 122
BLAST of EWM26869.1 vs. NCBI_GenBank
Match: gi|397642811|gb|EJK75472.1| (hypothetical protein THAOC_02804 [Thalassiosira oceanica]) HSP 1 Score: 142.124 bits (357), Expect = 3.498e-36 Identity = 75/133 (56.39%), Postives = 91/133 (68.42%), Query Frame = 0
Query: 54 LSASRNHLTRCLRTAVAARQVSVRQFHPSASRLGGSITRHEVWRDD-NEQDNLPKVKRRDGSIAAIEKKRGFVDYHRNPDPYRDPLDRVFDWGEIKTDEG-----HDEVERKVQAARCMDCGTPFCQTHTGCP 180
+ A+R T R+ AAR +S + S+S + GS RHE+WR+ + DN PKVKRRDGS IEK RGF++Y RN +PYRDP RV DWGE+ EG H E+ERK+QAARCMDCGTPFCQTHTGCP
Sbjct: 1 MLAARRKATNIARSH-AARSLSTKV---SSSNVLGSDGRHEIWREGIYDHDNEPKVKRRDGSYQPIEKLRGFINYSRNKEPYRDPSKRVLDWGELNPVEGRDEEKHTEIERKIQAARCMDCGTPFCQTHTGCP 129
BLAST of EWM26869.1 vs. NCBI_GenBank
Match: gi|219118705|ref|XP_002180120.1| (synthase of glutamate synthase [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408377|gb|EEC48311.1| synthase of glutamate synthase [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 136.346 bits (342), Expect = 5.111e-34 Identity = 63/98 (64.29%), Postives = 76/98 (77.55%), Query Frame = 0
Query: 88 GSITRHEVWRDD-NEQDNLPKVKRRDGSIAAIEKKRGFVDYHRNPDPYRDPLDRVFDWGEIKTDEG----HDEVERKVQAARCMDCGTPFCQTHTGCP 180
G RHE+WR+ + DN PK+KRRDGS ++IEK RGF++Y RNP+PYR PL+RV DWGE+ E H ++ERKVQAARCMDCGTPFCQTHTGCP
Sbjct: 35 GEDGRHEIWREGIYDHDNEPKIKRRDGSYSSIEKLRGFLNYERNPEPYRKPLERVMDWGELNPTEEDELHHTDLERKVQAARCMDCGTPFCQTHTGCP 132
BLAST of EWM26869.1 vs. NCBI_GenBank
Match: gi|1210529990|dbj|GAX11523.1| (glutamate synthase (NADPH/NADH) small chain [Fistulifera solaris]) HSP 1 Score: 135.191 bits (339), Expect = 1.216e-33 Identity = 71/136 (52.21%), Postives = 88/136 (64.71%), Query Frame = 0
Query: 53 MLSASRNHLTRCLRTAVAARQVSVRQFHPSASRLG--GSITRHEVWRD--DNEQDNLPKVKRRDGSIAAIEKKRGFVDYHRNPDPYRDPLDRVFDWGEI----KTDEGHDEVERKVQAARCMDCGTPFCQTHTGCP 180
ML+A L RT +R+ + G G+ RHE+WR+ ++ DN P+VKRRDGS A+IEK RGF++Y RNP+PYR P +RV DWGE+ + E H VERKVQAARCMDCGTPFCQTH GCP
Sbjct: 1 MLAARTQRLVASSRT--------LRKLSTQIEKAGPLGADGRHEIWREGQSSDHDNEPRVKRRDGSYASIEKLRGFLNYQRNPEPYRKPTERVRDWGELNPTEEDSEYHTSVERKVQAARCMDCGTPFCQTHAGCP 128
BLAST of EWM26869.1 vs. NCBI_GenBank
Match: gi|1210525177|dbj|GAX15936.1| (glutamate synthase (NADPH/NADH) small chain [Fistulifera solaris]) HSP 1 Score: 134.42 bits (337), Expect = 2.438e-33 Identity = 63/99 (63.64%), Postives = 76/99 (76.77%), Query Frame = 0
Query: 88 GSITRHEVWRD--DNEQDNLPKVKRRDGSIAAIEKKRGFVDYHRNPDPYRDPLDRVFDWGEI----KTDEGHDEVERKVQAARCMDCGTPFCQTHTGCP 180
G+ RHE+WR+ ++ DN P+VKRRDGS A+IEK RGF++Y RNP+PYR P +RV DWGE+ + E H VERKVQAARCMDCGTPFCQTH GCP
Sbjct: 30 GADGRHEIWREGQSSDHDNEPRVKRRDGSYASIEKLRGFLNYQRNPEPYRKPTERVRDWGELNPTEEDSEYHTSVERKVQAARCMDCGTPFCQTHAGCP 128
BLAST of EWM26869.1 vs. NCBI_GenBank
Match: gi|1072232368|gb|OEU17099.1| (hypothetical protein FRACYDRAFT_260715 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 116.316 bits (290), Expect = 5.368e-27 Identity = 67/138 (48.55%), Postives = 84/138 (60.87%), Query Frame = 0
Query: 58 RNHLTRCLR-TAVAARQVSVRQFHPSASRLGGSIT---RHEV-----WRDDNEQDNLPKVKRRDGSIAAIEKKRGFVDYHRNPDPYRDPLDRVFDWGEIK------TDEGHDEVERKVQAARCMDCGTPFCQTHTGCP 180
RN L R R TA+ AR V + S + G I RHE+ + D+E KV+RRDGS+ +EK RGF++Y RNP+PYR PL+R+ DW EI D H +E KVQAARCMDCGTPFCQT++GCP
Sbjct: 4 RNILGRSNRCTAILARAVRTQSTQVEKSSVKGPIATDGRHEIDHAVDYEHDSES---VKVRRRDGSMQNVEKLRGFLNYQRNPEPYRPPLERLQDWEEINPVPDRDVDVAHTALELKVQAARCMDCGTPFCQTYSGCP 138
BLAST of EWM26869.1 vs. NCBI_GenBank
Match: gi|675206651|ref|XP_008912210.1| (hypothetical protein PPTG_16429 [Phytophthora parasitica INRA-310] >gi|566014142|gb|ETI37053.1| hypothetical protein F443_16928 [Phytophthora parasitica P1569] >gi|567951577|gb|ETK77275.1| hypothetical protein L915_16457 [Phytophthora parasitica] >gi|567980245|gb|ETL30713.1| hypothetical protein L916_16356 [Phytophthora parasitica] >gi|568009741|gb|ETL83939.1| hypothetical protein L917_16180 [Phytophthora parasitica] >gi|568039653|gb|ETM37135.1| hypothetical protein L914_16287 [Phytophthora parasitica] >gi|568087607|gb|ETN02476.1| hypothetical protein PPTG_16429 [Phytophthora parasitica INRA-310] >gi|570317837|gb|ETO65785.1| hypothetical protein F444_16951 [Phytophthora parasitica P1976] >gi|570941656|gb|ETP06913.1| hypothetical protein F441_16771 [Phytophthora parasitica CJ01A1] >gi|970631205|gb|KUF77895.1| Glutamate synthase 2 [Phytophthora nicotianae]) HSP 1 Score: 99.3673 bits (246), Expect = 6.755e-21 Identity = 45/75 (60.00%), Postives = 54/75 (72.00%), Query Frame = 0
Query: 106 PKVKRRDGSIAAIEKKRGFVDYHRNPDPYRDPLDRVFDWGEIKTDEGHDEVERKVQAARCMDCGTPFCQTHTGCP 180
P +RDGS I+ R F+++ R PDPYRD +RV DW EI T D +ERK+QAARCMDCGTPFCQT+TGCP
Sbjct: 32 PVFDKRDGSKGEIDSARAFIEFKREPDPYRDVEERVHDWNEINTPR-RDPIERKIQAARCMDCGTPFCQTNTGCP 105
BLAST of EWM26869.1 vs. NCBI_GenBank
Match: gi|570971936|gb|ETP34989.1| (hypothetical protein F442_16769 [Phytophthora parasitica P10297]) HSP 1 Score: 99.3673 bits (246), Expect = 7.303e-21 Identity = 45/75 (60.00%), Postives = 54/75 (72.00%), Query Frame = 0
Query: 106 PKVKRRDGSIAAIEKKRGFVDYHRNPDPYRDPLDRVFDWGEIKTDEGHDEVERKVQAARCMDCGTPFCQTHTGCP 180
P +RDGS I+ R F+++ R PDPYRD +RV DW EI T D +ERK+QAARCMDCGTPFCQT+TGCP
Sbjct: 32 PVFDKRDGSKGEIDSARAFIEFKREPDPYRDVEERVHDWNEINTPR-RDPIERKIQAARCMDCGTPFCQTNTGCP 105 The following BLAST results are available for this feature:
BLAST of EWM26869.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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