EWM26873.1, cds3801 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26873.1 vs. NCBI_GenBank
Match: gi|585108976|gb|EWM26873.1| (glutamate synthase, partial [Nannochloropsis gaditana]) HSP 1 Score: 249.21 bits (635), Expect = 8.744e-84 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0 Query: 1 LPAGGRVVVLGETGRNFAAGMSGGIAYILDPERAFPDRCNKGLVALETVETEEEAALLKSYIQEHVQMTGSEVGKKVLAEWPAPIHQFVKVMPIDYKRVLRQLAEEGEEENSGDEAQVAISY 122 LPAGGRVVVLGETGRNFAAGMSGGIAYILDPERAFPDRCNKGLVALETVETEEEAALLKSYIQEHVQMTGSEVGKKVLAEWPAPIHQFVKVMPIDYKRVLRQLAEEGEEENSGDEAQVAISY Sbjct: 1 LPAGGRVVVLGETGRNFAAGMSGGIAYILDPERAFPDRCNKGLVALETVETEEEAALLKSYIQEHVQMTGSEVGKKVLAEWPAPIHQFVKVMPIDYKRVLRQLAEEGEEENSGDEAQVAISY 122
BLAST of EWM26873.1 vs. NCBI_GenBank
Match: gi|1194437947|gb|OUC09413.1| (hypothetical protein RY27_02995 [Litorilinea aerophila]) HSP 1 Score: 134.42 bits (337), Expect = 1.114e-35 Identity = 68/116 (58.62%), Postives = 83/116 (71.55%), Query Frame = 0 Query: 4 GGRVVVLGETGRNFAAGMSGGIAYILDPERAFPDRCNKGLVALETVETEEEAALLKSYIQEHVQMTGSEVGKKVLAEWPAPIHQFVKVMPIDYKRVLRQLAEEGEEENSGDEAQVA 119 GGRVVVLG TGRNFAAGMSGGIAY+LD + F RCN+ +V LE VE +E A L++ I+ H++ T S V K+VLA+WP + QFVKVMP DYKR+L A E SGDEA +A Sbjct: 228 GGRVVVLGRTGRNFAAGMSGGIAYVLDEDGTFARRCNREMVDLEAVEDADEMAELEAMIRRHMEYTDSPVAKRVLAQWPDVVRQFVKVMPRDYKRMLEAFARVEAEGLSGDEAAMA 343
BLAST of EWM26873.1 vs. NCBI_GenBank
Match: gi|653611889|ref|WP_027622368.1| (glutamate synthase subunit alpha [[Clostridium] clariflavum]) HSP 1 Score: 134.806 bits (338), Expect = 3.619e-34 Identity = 64/117 (54.70%), Postives = 84/117 (71.79%), Query Frame = 0 Query: 3 AGGRVVVLGETGRNFAAGMSGGIAYILDPERAFPDRCNKGLVALETVETEEEAALLKSYIQEHVQMTGSEVGKKVLAEWPAPIHQFVKVMPIDYKRVLRQLAEEGEEENSGDEAQVA 119 GG VV+LG+TGRNFAAGMSGGIAY+LD E F ++CNK +V LE + EEA +KS IQ+H T S+V K+VL W I +FVKVMP+DYKR+L+ + + E+ +GDEA +A Sbjct: 1395 TGGTVVILGKTGRNFAAGMSGGIAYVLDEEGDFSNKCNKEMVGLERISDNEEANKIKSMIQKHYDYTNSDVAKRVLDNWSKMIDKFVKVMPVDYKRMLQAIKQVSEQGITGDEALMA 1511
BLAST of EWM26873.1 vs. NCBI_GenBank
Match: gi|504019418|ref|WP_014253412.1| (glutamate synthase subunit alpha [[Clostridium] clariflavum] >gi|359824001|gb|AEV66774.1| glutamate synthase family protein [ [[Clostridium] clariflavum DSM 19732]) HSP 1 Score: 134.806 bits (338), Expect = 3.654e-34 Identity = 64/117 (54.70%), Postives = 84/117 (71.79%), Query Frame = 0 Query: 3 AGGRVVVLGETGRNFAAGMSGGIAYILDPERAFPDRCNKGLVALETVETEEEAALLKSYIQEHVQMTGSEVGKKVLAEWPAPIHQFVKVMPIDYKRVLRQLAEEGEEENSGDEAQVA 119 GG VV+LG+TGRNFAAGMSGGIAY+LD E F ++CNK +V LE + EEA +KS IQ+H T S+V K+VL W I +FVKVMP+DYKR+L+ + + E+ +GDEA +A Sbjct: 1395 TGGTVVILGKTGRNFAAGMSGGIAYVLDEEGDFSNKCNKEMVGLERISDNEEANKIKSMIQKHYDYTNSDVAKRVLDNWSKMIDKFVKVMPVDYKRMLQAIKQVSEQGITGDEALMA 1511
BLAST of EWM26873.1 vs. NCBI_GenBank
Match: gi|655097993|ref|WP_028545776.1| (glutamate synthase subunit alpha [Paenibacillus taiwanensis]) HSP 1 Score: 134.42 bits (337), Expect = 3.763e-34 Identity = 65/117 (55.56%), Postives = 87/117 (74.36%), Query Frame = 0 Query: 3 AGGRVVVLGETGRNFAAGMSGGIAYILDPERAFPDRCNKGLVALETVETEEEAALLKSYIQEHVQMTGSEVGKKVLAEWPAPIHQFVKVMPIDYKRVLRQLAEEGEEENSGDEAQVA 119 GGRV+VLG TGRNFAAGMSGG+AYILD + +F +RCN +V LE VE E+E A LK I++HVQ T S +G ++LA+W A + QFV+V+P DYKR+L Q+A+ + GD+A +A Sbjct: 1401 TGGRVIVLGHTGRNFAAGMSGGVAYILDTDNSFVNRCNLEMVLLERVEEEQEQAYLKQMIEKHVQHTDSAIGSRILADWEAKLPQFVRVIPKDYKRMLEQIAKVEAKGLVGDDAILA 1517
BLAST of EWM26873.1 vs. NCBI_GenBank
Match: gi|498035680|ref|WP_010349836.1| (glutamate synthase subunit alpha [Paenibacillus peoriae]) HSP 1 Score: 133.65 bits (335), Expect = 6.866e-34 Identity = 66/117 (56.41%), Postives = 82/117 (70.09%), Query Frame = 0 Query: 3 AGGRVVVLGETGRNFAAGMSGGIAYILDPERAFPDRCNKGLVALETVETEEEAALLKSYIQEHVQMTGSEVGKKVLAEWPAPIHQFVKVMPIDYKRVLRQLAEEGEEENSGDEAQVA 119 GGRVVVLG TGRNF AGMSGGIAY+ DPE F +RCN +V LE VE EAA L+ IQ HV TGSE G+++L +W + QFV+V+P DYKR++ Q+ +E SGDEA +A Sbjct: 1402 TGGRVVVLGGTGRNFGAGMSGGIAYVYDPEGTFLNRCNLEMVLLEEVEDPAEAAELRGLIQRHVTYTGSEAGQRILDDWQTAVQQFVRVIPKDYKRMMEQIQKEEATGLSGDEALLA 1518
BLAST of EWM26873.1 vs. NCBI_GenBank
Match: gi|970571885|ref|WP_058829108.1| (glutamate synthase subunit alpha [Paenibacillus polymyxa]) HSP 1 Score: 133.65 bits (335), Expect = 7.788e-34 Identity = 68/117 (58.12%), Postives = 81/117 (69.23%), Query Frame = 0 Query: 3 AGGRVVVLGETGRNFAAGMSGGIAYILDPERAFPDRCNKGLVALETVETEEEAALLKSYIQEHVQMTGSEVGKKVLAEWPAPIHQFVKVMPIDYKRVLRQLAEEGEEENSGDEAQVA 119 GGRV VLG TGRNF AGMSGGIAY+ DPE AF RCN +V LE VE EAA L+ IQ HV TGSE G+++L EW I QFV+V+P DYKR++ Q+ +E SGDEA +A Sbjct: 1402 TGGRVAVLGGTGRNFGAGMSGGIAYVYDPEGAFLSRCNLEMVLLEDVEDPGEAADLRGLIQRHVTYTGSEAGQRILDEWQTAIQQFVRVIPKDYKRMVEQIQKEEATGLSGDEALLA 1518
BLAST of EWM26873.1 vs. NCBI_GenBank
Match: gi|746220171|ref|WP_039269524.1| (glutamate synthase subunit alpha [Paenibacillus polymyxa] >gi|660639261|gb|KEO80138.1| glutamate synthase [Paenibacillus polymyxa]) HSP 1 Score: 133.265 bits (334), Expect = 9.455e-34 Identity = 67/117 (57.26%), Postives = 80/117 (68.38%), Query Frame = 0 Query: 3 AGGRVVVLGETGRNFAAGMSGGIAYILDPERAFPDRCNKGLVALETVETEEEAALLKSYIQEHVQMTGSEVGKKVLAEWPAPIHQFVKVMPIDYKRVLRQLAEEGEEENSGDEAQVA 119 GGRV VLG TGRNF AGMSGGIAY+ DPE F RCN +V LE VE EAA L+ IQ HV TGSE G+++L EW I QFV+V+P DYKR++ Q+ +E SGDEA +A Sbjct: 1402 TGGRVAVLGGTGRNFGAGMSGGIAYVYDPEGTFLSRCNLEMVLLEDVEDSAEAADLRGLIQRHVTYTGSEAGQRILDEWQTAIQQFVRVIPKDYKRMVEQIQKEEATGLSGDEALLA 1518
BLAST of EWM26873.1 vs. NCBI_GenBank
Match: gi|1094918941|emb|SEI94850.1| (glutamate synthase (ferredoxin) [Paenibacillus sp. 181mfcol5.1]) HSP 1 Score: 133.265 bits (334), Expect = 1.205e-33 Identity = 67/117 (57.26%), Postives = 81/117 (69.23%), Query Frame = 0 Query: 3 AGGRVVVLGETGRNFAAGMSGGIAYILDPERAFPDRCNKGLVALETVETEEEAALLKSYIQEHVQMTGSEVGKKVLAEWPAPIHQFVKVMPIDYKRVLRQLAEEGEEENSGDEAQVA 119 GGRV VLG TGRNF AGMSGGIAY+ DPE F RCN +V LE VE EAA L+ IQ HV TGSEVG+++L EW I QFV+V+P D+KR++ Q+ +E SGDEA +A Sbjct: 1402 TGGRVAVLGGTGRNFGAGMSGGIAYVYDPEGTFLSRCNLEMVLLEDVEDPAEAADLRGLIQRHVTYTGSEVGQRILDEWQTAIQQFVRVIPKDFKRMVEQIQKEEATGLSGDEALLA 1518
BLAST of EWM26873.1 vs. NCBI_GenBank
Match: gi|504046252|ref|WP_014280246.1| (glutamate synthase subunit alpha [Paenibacillus terrae] >gi|357201622|gb|AET59519.1| ferredoxin-dependent glutamate synthase 1 (Fd-GOGAT) [Paenibacillus terrae HPL-003]) HSP 1 Score: 133.265 bits (334), Expect = 1.265e-33 Identity = 66/117 (56.41%), Postives = 81/117 (69.23%), Query Frame = 0 Query: 3 AGGRVVVLGETGRNFAAGMSGGIAYILDPERAFPDRCNKGLVALETVETEEEAALLKSYIQEHVQMTGSEVGKKVLAEWPAPIHQFVKVMPIDYKRVLRQLAEEGEEENSGDEAQVA 119 GGRV VLGETGRNF AGMSGGIAY+ DP+ F RCN +V LE VE EAA L+ IQ HV TGSE G+++L +W I QFV+V+P DYKR++ Q+ +E SGDEA +A Sbjct: 1402 TGGRVAVLGETGRNFGAGMSGGIAYVYDPQGTFLSRCNLEMVLLEGVEDPAEAADLRGLIQRHVTYTGSEAGQRILDDWQTAIQQFVRVIPKDYKRMVEQIQKEEATGLSGDEALLA 1518 The following BLAST results are available for this feature:
BLAST of EWM26873.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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