EWM26873.1, cds3801 (CDS) Nannochloropsis gaditana

Overview
NameEWM26873.1
Unique Namecds3801
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:114751..114912 -
Alignment locationCM002462.1:114366..114572 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26873.1
Productglutamate synthase
Partialtrue
Orig transcript idgnl|cribi|Naga_101061g3.7802.mrna
GbkeyCDS
End range.
End range114912
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:114751..114912 -
CM002462.1supercontigCM002462.1:114366..114572 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: INTERPRO
TermDefinition
IPR002489Glu_synth_asu_C
Homology
BLAST of EWM26873.1 vs. NCBI_GenBank
Match: gi|585108976|gb|EWM26873.1| (glutamate synthase, partial [Nannochloropsis gaditana])

HSP 1 Score: 249.21 bits (635), Expect = 8.744e-84
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0
Query:    1 LPAGGRVVVLGETGRNFAAGMSGGIAYILDPERAFPDRCNKGLVALETVETEEEAALLKSYIQEHVQMTGSEVGKKVLAEWPAPIHQFVKVMPIDYKRVLRQLAEEGEEENSGDEAQVAISY 122
            LPAGGRVVVLGETGRNFAAGMSGGIAYILDPERAFPDRCNKGLVALETVETEEEAALLKSYIQEHVQMTGSEVGKKVLAEWPAPIHQFVKVMPIDYKRVLRQLAEEGEEENSGDEAQVAISY
Sbjct:    1 LPAGGRVVVLGETGRNFAAGMSGGIAYILDPERAFPDRCNKGLVALETVETEEEAALLKSYIQEHVQMTGSEVGKKVLAEWPAPIHQFVKVMPIDYKRVLRQLAEEGEEENSGDEAQVAISY 122          
BLAST of EWM26873.1 vs. NCBI_GenBank
Match: gi|1194437947|gb|OUC09413.1| (hypothetical protein RY27_02995 [Litorilinea aerophila])

HSP 1 Score: 134.42 bits (337), Expect = 1.114e-35
Identity = 68/116 (58.62%), Postives = 83/116 (71.55%), Query Frame = 0
Query:    4 GGRVVVLGETGRNFAAGMSGGIAYILDPERAFPDRCNKGLVALETVETEEEAALLKSYIQEHVQMTGSEVGKKVLAEWPAPIHQFVKVMPIDYKRVLRQLAEEGEEENSGDEAQVA 119
            GGRVVVLG TGRNFAAGMSGGIAY+LD +  F  RCN+ +V LE VE  +E A L++ I+ H++ T S V K+VLA+WP  + QFVKVMP DYKR+L   A    E  SGDEA +A
Sbjct:  228 GGRVVVLGRTGRNFAAGMSGGIAYVLDEDGTFARRCNREMVDLEAVEDADEMAELEAMIRRHMEYTDSPVAKRVLAQWPDVVRQFVKVMPRDYKRMLEAFARVEAEGLSGDEAAMA 343          
BLAST of EWM26873.1 vs. NCBI_GenBank
Match: gi|653611889|ref|WP_027622368.1| (glutamate synthase subunit alpha [[Clostridium] clariflavum])

HSP 1 Score: 134.806 bits (338), Expect = 3.619e-34
Identity = 64/117 (54.70%), Postives = 84/117 (71.79%), Query Frame = 0
Query:    3 AGGRVVVLGETGRNFAAGMSGGIAYILDPERAFPDRCNKGLVALETVETEEEAALLKSYIQEHVQMTGSEVGKKVLAEWPAPIHQFVKVMPIDYKRVLRQLAEEGEEENSGDEAQVA 119
             GG VV+LG+TGRNFAAGMSGGIAY+LD E  F ++CNK +V LE +   EEA  +KS IQ+H   T S+V K+VL  W   I +FVKVMP+DYKR+L+ + +  E+  +GDEA +A
Sbjct: 1395 TGGTVVILGKTGRNFAAGMSGGIAYVLDEEGDFSNKCNKEMVGLERISDNEEANKIKSMIQKHYDYTNSDVAKRVLDNWSKMIDKFVKVMPVDYKRMLQAIKQVSEQGITGDEALMA 1511          
BLAST of EWM26873.1 vs. NCBI_GenBank
Match: gi|504019418|ref|WP_014253412.1| (glutamate synthase subunit alpha [[Clostridium] clariflavum] >gi|359824001|gb|AEV66774.1| glutamate synthase family protein [ [[Clostridium] clariflavum DSM 19732])

HSP 1 Score: 134.806 bits (338), Expect = 3.654e-34
Identity = 64/117 (54.70%), Postives = 84/117 (71.79%), Query Frame = 0
Query:    3 AGGRVVVLGETGRNFAAGMSGGIAYILDPERAFPDRCNKGLVALETVETEEEAALLKSYIQEHVQMTGSEVGKKVLAEWPAPIHQFVKVMPIDYKRVLRQLAEEGEEENSGDEAQVA 119
             GG VV+LG+TGRNFAAGMSGGIAY+LD E  F ++CNK +V LE +   EEA  +KS IQ+H   T S+V K+VL  W   I +FVKVMP+DYKR+L+ + +  E+  +GDEA +A
Sbjct: 1395 TGGTVVILGKTGRNFAAGMSGGIAYVLDEEGDFSNKCNKEMVGLERISDNEEANKIKSMIQKHYDYTNSDVAKRVLDNWSKMIDKFVKVMPVDYKRMLQAIKQVSEQGITGDEALMA 1511          
BLAST of EWM26873.1 vs. NCBI_GenBank
Match: gi|655097993|ref|WP_028545776.1| (glutamate synthase subunit alpha [Paenibacillus taiwanensis])

HSP 1 Score: 134.42 bits (337), Expect = 3.763e-34
Identity = 65/117 (55.56%), Postives = 87/117 (74.36%), Query Frame = 0
Query:    3 AGGRVVVLGETGRNFAAGMSGGIAYILDPERAFPDRCNKGLVALETVETEEEAALLKSYIQEHVQMTGSEVGKKVLAEWPAPIHQFVKVMPIDYKRVLRQLAEEGEEENSGDEAQVA 119
             GGRV+VLG TGRNFAAGMSGG+AYILD + +F +RCN  +V LE VE E+E A LK  I++HVQ T S +G ++LA+W A + QFV+V+P DYKR+L Q+A+   +   GD+A +A
Sbjct: 1401 TGGRVIVLGHTGRNFAAGMSGGVAYILDTDNSFVNRCNLEMVLLERVEEEQEQAYLKQMIEKHVQHTDSAIGSRILADWEAKLPQFVRVIPKDYKRMLEQIAKVEAKGLVGDDAILA 1517          
BLAST of EWM26873.1 vs. NCBI_GenBank
Match: gi|498035680|ref|WP_010349836.1| (glutamate synthase subunit alpha [Paenibacillus peoriae])

HSP 1 Score: 133.65 bits (335), Expect = 6.866e-34
Identity = 66/117 (56.41%), Postives = 82/117 (70.09%), Query Frame = 0
Query:    3 AGGRVVVLGETGRNFAAGMSGGIAYILDPERAFPDRCNKGLVALETVETEEEAALLKSYIQEHVQMTGSEVGKKVLAEWPAPIHQFVKVMPIDYKRVLRQLAEEGEEENSGDEAQVA 119
             GGRVVVLG TGRNF AGMSGGIAY+ DPE  F +RCN  +V LE VE   EAA L+  IQ HV  TGSE G+++L +W   + QFV+V+P DYKR++ Q+ +E     SGDEA +A
Sbjct: 1402 TGGRVVVLGGTGRNFGAGMSGGIAYVYDPEGTFLNRCNLEMVLLEEVEDPAEAAELRGLIQRHVTYTGSEAGQRILDDWQTAVQQFVRVIPKDYKRMMEQIQKEEATGLSGDEALLA 1518          
BLAST of EWM26873.1 vs. NCBI_GenBank
Match: gi|970571885|ref|WP_058829108.1| (glutamate synthase subunit alpha [Paenibacillus polymyxa])

HSP 1 Score: 133.65 bits (335), Expect = 7.788e-34
Identity = 68/117 (58.12%), Postives = 81/117 (69.23%), Query Frame = 0
Query:    3 AGGRVVVLGETGRNFAAGMSGGIAYILDPERAFPDRCNKGLVALETVETEEEAALLKSYIQEHVQMTGSEVGKKVLAEWPAPIHQFVKVMPIDYKRVLRQLAEEGEEENSGDEAQVA 119
             GGRV VLG TGRNF AGMSGGIAY+ DPE AF  RCN  +V LE VE   EAA L+  IQ HV  TGSE G+++L EW   I QFV+V+P DYKR++ Q+ +E     SGDEA +A
Sbjct: 1402 TGGRVAVLGGTGRNFGAGMSGGIAYVYDPEGAFLSRCNLEMVLLEDVEDPGEAADLRGLIQRHVTYTGSEAGQRILDEWQTAIQQFVRVIPKDYKRMVEQIQKEEATGLSGDEALLA 1518          
BLAST of EWM26873.1 vs. NCBI_GenBank
Match: gi|746220171|ref|WP_039269524.1| (glutamate synthase subunit alpha [Paenibacillus polymyxa] >gi|660639261|gb|KEO80138.1| glutamate synthase [Paenibacillus polymyxa])

HSP 1 Score: 133.265 bits (334), Expect = 9.455e-34
Identity = 67/117 (57.26%), Postives = 80/117 (68.38%), Query Frame = 0
Query:    3 AGGRVVVLGETGRNFAAGMSGGIAYILDPERAFPDRCNKGLVALETVETEEEAALLKSYIQEHVQMTGSEVGKKVLAEWPAPIHQFVKVMPIDYKRVLRQLAEEGEEENSGDEAQVA 119
             GGRV VLG TGRNF AGMSGGIAY+ DPE  F  RCN  +V LE VE   EAA L+  IQ HV  TGSE G+++L EW   I QFV+V+P DYKR++ Q+ +E     SGDEA +A
Sbjct: 1402 TGGRVAVLGGTGRNFGAGMSGGIAYVYDPEGTFLSRCNLEMVLLEDVEDSAEAADLRGLIQRHVTYTGSEAGQRILDEWQTAIQQFVRVIPKDYKRMVEQIQKEEATGLSGDEALLA 1518          
BLAST of EWM26873.1 vs. NCBI_GenBank
Match: gi|1094918941|emb|SEI94850.1| (glutamate synthase (ferredoxin) [Paenibacillus sp. 181mfcol5.1])

HSP 1 Score: 133.265 bits (334), Expect = 1.205e-33
Identity = 67/117 (57.26%), Postives = 81/117 (69.23%), Query Frame = 0
Query:    3 AGGRVVVLGETGRNFAAGMSGGIAYILDPERAFPDRCNKGLVALETVETEEEAALLKSYIQEHVQMTGSEVGKKVLAEWPAPIHQFVKVMPIDYKRVLRQLAEEGEEENSGDEAQVA 119
             GGRV VLG TGRNF AGMSGGIAY+ DPE  F  RCN  +V LE VE   EAA L+  IQ HV  TGSEVG+++L EW   I QFV+V+P D+KR++ Q+ +E     SGDEA +A
Sbjct: 1402 TGGRVAVLGGTGRNFGAGMSGGIAYVYDPEGTFLSRCNLEMVLLEDVEDPAEAADLRGLIQRHVTYTGSEVGQRILDEWQTAIQQFVRVIPKDFKRMVEQIQKEEATGLSGDEALLA 1518          
BLAST of EWM26873.1 vs. NCBI_GenBank
Match: gi|504046252|ref|WP_014280246.1| (glutamate synthase subunit alpha [Paenibacillus terrae] >gi|357201622|gb|AET59519.1| ferredoxin-dependent glutamate synthase 1 (Fd-GOGAT) [Paenibacillus terrae HPL-003])

HSP 1 Score: 133.265 bits (334), Expect = 1.265e-33
Identity = 66/117 (56.41%), Postives = 81/117 (69.23%), Query Frame = 0
Query:    3 AGGRVVVLGETGRNFAAGMSGGIAYILDPERAFPDRCNKGLVALETVETEEEAALLKSYIQEHVQMTGSEVGKKVLAEWPAPIHQFVKVMPIDYKRVLRQLAEEGEEENSGDEAQVA 119
             GGRV VLGETGRNF AGMSGGIAY+ DP+  F  RCN  +V LE VE   EAA L+  IQ HV  TGSE G+++L +W   I QFV+V+P DYKR++ Q+ +E     SGDEA +A
Sbjct: 1402 TGGRVAVLGETGRNFGAGMSGGIAYVYDPQGTFLSRCNLEMVLLEGVEDPAEAADLRGLIQRHVTYTGSEAGQRILDDWQTAIQQFVRVIPKDYKRMVEQIQKEEATGLSGDEALLA 1518          
The following BLAST results are available for this feature:
BLAST of EWM26873.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108976|gb|EWM26873.1|8.744e-84100.00glutamate synthase, partial [Nannochloropsis gadit... [more]
gi|1194437947|gb|OUC09413.1|1.114e-3558.62hypothetical protein RY27_02995 [Litorilinea aerop... [more]
gi|653611889|ref|WP_027622368.1|3.619e-3454.70glutamate synthase subunit alpha [[Clostridium] cl... [more]
gi|504019418|ref|WP_014253412.1|3.654e-3454.70glutamate synthase subunit alpha [[Clostridium] cl... [more]
gi|655097993|ref|WP_028545776.1|3.763e-3455.56glutamate synthase subunit alpha [Paenibacillus ta... [more]
gi|498035680|ref|WP_010349836.1|6.866e-3456.41glutamate synthase subunit alpha [Paenibacillus pe... [more]
gi|970571885|ref|WP_058829108.1|7.788e-3458.12glutamate synthase subunit alpha [Paenibacillus po... [more]
gi|746220171|ref|WP_039269524.1|9.455e-3457.26glutamate synthase subunit alpha [Paenibacillus po... [more]
gi|1094918941|emb|SEI94850.1|1.205e-3357.26glutamate synthase (ferredoxin) [Paenibacillus sp.... [more]
gi|504046252|ref|WP_014280246.1|1.265e-3356.41glutamate synthase subunit alpha [Paenibacillus te... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3810rna3810Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications