EWM26888.1, cds3785 (CDS) Nannochloropsis gaditana

Overview
NameEWM26888.1
Unique Namecds3785
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:72254..72271 -
Alignment locationCM002462.1:71842..71985 -
Alignment locationCM002462.1:71416..71626 -
Alignment locationCM002462.1:71196..71265 -

Link to JBrowse

Properties
Property NameValue
Start range71196
Start range.
Protein idEWM26888.1
Productnucleotide transporter 3
Partialtrue
Orig transcript idgnl|cribi|Naga_102094g1.3239.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:72254..72271 -
CM002462.1supercontigCM002462.1:71842..71985 -
CM002462.1supercontigCM002462.1:71416..71626 -
CM002462.1supercontigCM002462.1:71196..71265 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0005471ATP:ADP antiporter activity
Vocabulary: Biological Process
TermDefinition
GO:0042221response to chemical
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
IPR004667ADP_ATP_car
Homology
BLAST of EWM26888.1 vs. NCBI_GenBank
Match: gi|585109009|gb|EWM26888.1| (nucleotide transporter 3, partial [Nannochloropsis gaditana])

HSP 1 Score: 296.975 bits (759), Expect = 8.437e-102
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0
Query:    1 MGLFGQVTNGISFLFSLTGTSFVIRRLGLYRSLVAFPLLCMGAIAVAMLMPDLWVVFACMMFLKALSYSLNNPCKEMLYQPTNTAVKFKSKSWIDIFGQRGAKAAGSVVTNALSDSVRSLVFYGGLISVFISAFLVWVAAWMGTRFE 147
            MGLFGQVTNGISFLFSLTGTSFVIRRLGLYRSLVAFPLLCMGAIAVAMLMPDLWVVFACMMFLKALSYSLNNPCKEMLYQPTNTAVKFKSKSWIDIFGQRGAKAAGSVVTNALSDSVRSLVFYGGLISVFISAFLVWVAAWMGTRFE
Sbjct:    1 MGLFGQVTNGISFLFSLTGTSFVIRRLGLYRSLVAFPLLCMGAIAVAMLMPDLWVVFACMMFLKALSYSLNNPCKEMLYQPTNTAVKFKSKSWIDIFGQRGAKAAGSVVTNALSDSVRSLVFYGGLISVFISAFLVWVAAWMGTRFE 147          
BLAST of EWM26888.1 vs. NCBI_GenBank
Match: gi|676377923|ref|XP_009032240.1| (hypothetical protein AURANDRAFT_60513 [Aureococcus anophagefferens] >gi|323456705|gb|EGB12571.1| hypothetical protein AURANDRAFT_60513 [Aureococcus anophagefferens])

HSP 1 Score: 184.111 bits (466), Expect = 6.798e-53
Identity = 85/147 (57.82%), Postives = 112/147 (76.19%), Query Frame = 0
Query:    1 MGLFGQVTNGISFLFSLTGTSFVIRRLGLYRSLVAFPLLCMGAIAVAMLMPDLWVVFACMMFLKALSYSLNNPCKEMLYQPTNTAVKFKSKSWIDIFGQRGAKAAGSVVTNALSDSVRSLVFYGGLISVFISAFLVWVAAWMGTRFE 147
            MG+FGQ  NG+SF+FSL GTS VIRRLGL ++L+ FP LC+GAI      P L +VF  M+ LK  SY LNNPCKE+LYQPT+++VKFK+KSWID+FG RG+KA GSVVTN  +DS   L+ YG  +++ +S+FL++VA W G +F+
Sbjct:  336 MGVFGQAANGLSFVFSLLGTSMVIRRLGLNKTLLLFPTLCLGAICCVYTTPTLEMVFLAMLLLKGFSYCLNNPCKEILYQPTSSSVKFKAKSWIDVFGARGSKALGSVVTNQFADSAADLLTYGSFVAMGVSSFLIYVAYWQGAQFD 482          
BLAST of EWM26888.1 vs. NCBI_GenBank
Match: gi|397647795|gb|EJK77857.1| (hypothetical protein THAOC_00278 [Thalassiosira oceanica])

HSP 1 Score: 174.096 bits (440), Expect = 2.590e-48
Identity = 85/147 (57.82%), Postives = 107/147 (72.79%), Query Frame = 0
Query:    1 MGLFGQVTNGISFLFSLTGTSFVIRRLGLYRSLVAFPLLCMGAIAVAMLMPDLWVVFACMMFLKALSYSLNNPCKEMLYQPTNTAVKFKSKSWIDIFGQRGAKAAGSVVTNALSDSVRSLVFYGGLISVFISAFLVWVAAWMGTRFE 147
            MGLFGQ TN +SFL S  GTS +IR LGL  +L+ FP +C+  I    + P L VVFA MM LKA SY+LNNP KEMLYQPT++ VK+K+KSWIDIFG RG+KA GSVVTNA S S   L+  G L+ + +++FL+W A +MG +FE
Sbjct:  440 MGLFGQATNTLSFLLSFFGTSAIIRHLGLRTTLLLFPSICLAVIITVRMYPTLNVVFAAMMILKANSYALNNPTKEMLYQPTSSTVKYKAKSWIDIFGARGSKALGSVVTNAFSASASELIDKGSLVGMCVASFLIWNAKFMGKKFE 586          
BLAST of EWM26888.1 vs. NCBI_GenBank
Match: gi|298705965|emb|CBJ29086.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 172.555 bits (436), Expect = 3.802e-48
Identity = 88/146 (60.27%), Postives = 111/146 (76.03%), Query Frame = 0
Query:    2 GLFGQVTNGISFLFSLTGTSFVIRRLGLYRSLVAFPLLCMGAIAVAMLMPDLWVVFACMMFLKALSYSLNNPCKEMLYQPTNTAVKFKSKSWIDIFGQRGAKAAGSVVTNALSDSVRSLVFYGGLISVFISAFLVWVAAWMGTRFE 147
            G+FGQVTN ISF FSL GTS VIRRLGL  +L+AFP +C+  + + M  P L+VVF  ++ LK  SYSLNNPCKE+LYQPTN+AVKFKSKSWIDIFG R +KA GS+VT+A S S+  L+  GG ++   +AFL+WVA  MG +F+
Sbjct:  378 GMFGQVTNTISFGFSLLGTSMVIRRLGLKTTLLAFPCMCLAVVIMVMAFPQLYVVFLALILLKGFSYSLNNPCKEILYQPTNSAVKFKSKSWIDIFGARMSKAGGSLVTDAFSSSIPGLIHVGGSVAAGGAAFLIWVAWVMGRKFD 523          
BLAST of EWM26888.1 vs. NCBI_GenBank
Match: gi|224001282|ref|XP_002290313.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973735|gb|EED92065.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 173.326 bits (438), Expect = 6.574e-48
Identity = 87/147 (59.18%), Postives = 108/147 (73.47%), Query Frame = 0
Query:    1 MGLFGQVTNGISFLFSLTGTSFVIRRLGLYRSLVAFPLLCMGAIAVAMLMPDLWVVFACMMFLKALSYSLNNPCKEMLYQPTNTAVKFKSKSWIDIFGQRGAKAAGSVVTNALSDSVRSLVFYGGLISVFISAFLVWVAAWMGTRFE 147
            MGLFGQ TN +SFL S  GTS VIR+LGL  +L+ FP +C+  I    L P L VVFA MM LKA SY+LNNP KEMLYQPT++ VK+K+KSWIDIFG RG+KA GSVVTNA S S   LV  G L+ + +++FL+W A +MG +F+
Sbjct:  438 MGLFGQATNTLSFLLSFFGTSAVIRKLGLRTTLLLFPSICLITIITVRLYPTLDVVFAAMMILKANSYALNNPTKEMLYQPTSSNVKYKAKSWIDIFGARGSKALGSVVTNAFSHSAVELVDKGSLVGMCVASFLIWNANFMGKKFD 584          
BLAST of EWM26888.1 vs. NCBI_GenBank
Match: gi|219129839|ref|XP_002185087.1| (nucleotide transporter 3 [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403582|gb|EEC43534.1| nucleotide transporter 3 [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 167.162 bits (422), Expect = 1.130e-45
Identity = 87/147 (59.18%), Postives = 109/147 (74.15%), Query Frame = 0
Query:    1 MGLFGQVTNGISFLFSLTGTSFVIRRLGLYRSLVAFPLLCMGAIAVAMLMPDLWVVFACMMFLKALSYSLNNPCKEMLYQPTNTAVKFKSKSWIDIFGQRGAKAAGSVVTNALSDSVRSLVFYGGLISVFISAFLVWVAAWMGTRFE 147
            MGLFGQ TN +SFL SL GTS VIR LGL  +L+ FP LC+  I      P L+VVF  M+ LKA SY+LNNP KEMLYQPT++AV++K+KSWIDIFG RG+KA GSVVTNA SDS   LV  G L+ + +++FL+W A +MG +F+
Sbjct:  441 MGLFGQATNTLSFLLSLFGTSAVIRYLGLRLTLLLFPSLCLAVIIFVRFRPTLYVVFGAMITLKACSYALNNPTKEMLYQPTSSAVRYKAKSWIDIFGARGSKAMGSVVTNAFSDSATRLVANGSLVGMAVASFLIWNATFMGRKFD 587          
BLAST of EWM26888.1 vs. NCBI_GenBank
Match: gi|1072238131|gb|OEU22858.1| (hypothetical protein FRACYDRAFT_223641 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 163.696 bits (413), Expect = 1.153e-44
Identity = 86/147 (58.50%), Postives = 109/147 (74.15%), Query Frame = 0
Query:    1 MGLFGQVTNGISFLFSLTGTSFVIRRLGLYRSLVAFPLLCMGAIAVAMLMPDLWVVFACMMFLKALSYSLNNPCKEMLYQPTNTAVKFKSKSWIDIFGQRGAKAAGSVVTNALSDSVRSLVFYGGLISVFISAFLVWVAAWMGTRFE 147
            MGLFG  TN +SF+FSL GTS +IR+LGL  +L+ FP LC+  I +    P L+VVF  M+ LKA SY+LNNP KE+LYQPT+ AV++K+KSWIDIFG RG+KA GSVVTNA SDS  +LV  G L+ + +S FL+W A +MG  FE
Sbjct:  417 MGLFGVATNSLSFIFSLLGTSAIIRKLGLRLTLLLFPSLCLIVIIIVRYRPTLYVVFLAMIMLKANSYALNNPTKEILYQPTSGAVRYKAKSWIDIFGARGSKALGSVVTNAFSDSAENLVANGSLVGMAVSCFLIWNARFMGKCFE 563          
BLAST of EWM26888.1 vs. NCBI_GenBank
Match: gi|1210528389|dbj|GAX13078.1| (hypothetical protein FisN_2Hh587 [Fistulifera solaris])

HSP 1 Score: 159.458 bits (402), Expect = 5.162e-43
Identity = 85/147 (57.82%), Postives = 110/147 (74.83%), Query Frame = 0
Query:    1 MGLFGQVTNGISFLFSLTGTSFVIRRLGLYRSLVAFPLLCMGAIAVAMLMPDLWVVFACMMFLKALSYSLNNPCKEMLYQPTNTAVKFKSKSWIDIFGQRGAKAAGSVVTNALSDSVRSLVFYGGLISVFISAFLVWVAAWMGTRFE 147
            MGLFGQ TN +SFLFSL GTS VIR LGL  +L+ FP LC+  I    L P L+VVF  MM LKA SY+LNNP KE+LYQPT++AV++K+KSWIDIFG RG+KA GS+VTN  SDS  +L+  G  + + +++FL+W A +MG +F+
Sbjct:  409 MGLFGQATNSLSFLFSLFGTSAVIRFLGLRLTLLLFPSLCLCVIIFVRLYPTLYVVFGAMMLLKANSYALNNPTKEILYQPTSSAVRYKAKSWIDIFGARGSKALGSLVTNFFSDSAANLIANGSFVGMGVASFLIWNARFMGKKFD 555          
BLAST of EWM26888.1 vs. NCBI_GenBank
Match: gi|1210530829|dbj|GAX10561.1| (hypothetical protein FisN_2Lh587 [Fistulifera solaris])

HSP 1 Score: 159.073 bits (401), Expect = 6.143e-43
Identity = 85/147 (57.82%), Postives = 110/147 (74.83%), Query Frame = 0
Query:    1 MGLFGQVTNGISFLFSLTGTSFVIRRLGLYRSLVAFPLLCMGAIAVAMLMPDLWVVFACMMFLKALSYSLNNPCKEMLYQPTNTAVKFKSKSWIDIFGQRGAKAAGSVVTNALSDSVRSLVFYGGLISVFISAFLVWVAAWMGTRFE 147
            MGLFGQ TN +SFLFSL GTS VIR LGL  +L+ FP LC+  I    L P L+VVF  MM LKA SY+LNNP KE+LYQPT++AV++K+KSWIDIFG RG+KA GS+VTN  SDS  +L+  G  + + +++FL+W A +MG +F+
Sbjct:  409 MGLFGQATNSLSFLFSLFGTSAVIRFLGLRLTLLLFPSLCLCVIIFVRLYPTLYVVFGAMMLLKANSYALNNPTKEILYQPTSSAVRYKAKSWIDIFGARGSKALGSLVTNFFSDSAANLIANGSFVGMGVASFLIWNARFMGKKFD 555          
BLAST of EWM26888.1 vs. NCBI_GenBank
Match: gi|1173940537|gb|OQR89924.1| (hypothetical protein ACHHYP_05942 [Achlya hypogyna])

HSP 1 Score: 149.443 bits (376), Expect = 3.776e-40
Identity = 82/146 (56.16%), Postives = 105/146 (71.92%), Query Frame = 0
Query:    2 GLFGQVTNGISFLFSLTGTSFVIRRLGLYRSLVAFPLLCMGAIAVAMLMPDLWVVFACMMFLKALSYSLNNPCKEMLYQPTNTAVKFKSKSWIDIFGQRGAKAAGSVVTNALSDSVRSLVFYGGLISVFISAFLVWVAAWMGTRFE 147
            G FG   N ISF+ SL GTS+V+R  GL  +L+ FPLL + A+AV  + P LWVVF  M+FLKA +Y++NNP KEMLY  TN+AVKFK+KSWID+FG R AKA GS +TN L  S   L+ YG L+S+ I+  L+ VA+WMGT+F 
Sbjct:  307 GKFGMAVNTISFIASLLGTSWVLRTCGLRPTLMGFPLLLLAAVAVVYVFPTLWVVFGAMIFLKATTYAINNPAKEMLYSVTNSAVKFKAKSWIDVFGGRMAKATGSSITNGLKSSPVLLMQYGSLVSMAIALLLLGVASWMGTQFN 452          
The following BLAST results are available for this feature:
BLAST of EWM26888.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109009|gb|EWM26888.1|8.437e-102100.00nucleotide transporter 3, partial [Nannochloropsis... [more]
gi|676377923|ref|XP_009032240.1|6.798e-5357.82hypothetical protein AURANDRAFT_60513 [Aureococcus... [more]
gi|397647795|gb|EJK77857.1|2.590e-4857.82hypothetical protein THAOC_00278 [Thalassiosira oc... [more]
gi|298705965|emb|CBJ29086.1|3.802e-4860.27conserved unknown protein [Ectocarpus siliculosus][more]
gi|224001282|ref|XP_002290313.1|6.574e-4859.18predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|219129839|ref|XP_002185087.1|1.130e-4559.18nucleotide transporter 3 [Phaeodactylum tricornutu... [more]
gi|1072238131|gb|OEU22858.1|1.153e-4458.50hypothetical protein FRACYDRAFT_223641 [Fragilario... [more]
gi|1210528389|dbj|GAX13078.1|5.162e-4357.82hypothetical protein FisN_2Hh587 [Fistulifera sola... [more]
gi|1210530829|dbj|GAX10561.1|6.143e-4357.82hypothetical protein FisN_2Lh587 [Fistulifera sola... [more]
gi|1173940537|gb|OQR89924.1|3.776e-4056.16hypothetical protein ACHHYP_05942 [Achlya hypogyna... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3794rna3794Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications