EWM26895.1, cds3772 (CDS) Nannochloropsis gaditana

Overview
NameEWM26895.1
Unique Namecds3772
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:30855..31277 +
Alignment locationCM002462.1:31516..31851 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26895.1
Productnad h dehydrogenase
Orig transcript idgnl|cribi|Naga_100103g8.7032.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:30855..31277 +
CM002462.1supercontigCM002462.1:31516..31851 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR003680Flavodoxin_fold
IPR029039Flavoprotein-like
Homology
BLAST of EWM26895.1 vs. NCBI_GenBank
Match: gi|585109025|gb|EWM26895.1| (nad h dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 524.242 bits (1349), Expect = 0.000e+0
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0
Query:    1 MPRGNKELSLFLWDPLSRFLASAANRWTSFIPPPPRHPSDPPRRVLLLHAHPMGTSSFNGACFETTHRSLQEAGHEVQTLSLYEEGFQPCMQASDIREYMKPLSDRHDEGTPDKAALLRYIDLLKWCDALIFVYPTWWYAMPAILKGWIDRTFLPHSAFTLPTPTSPPASVVGLVPCLKNIKKVGVVTTYGSSYQVIRYVGDPGRRIIARGLRPLFDAQCTLLWLGMYSCDTASQAEREDFLAEVNSYMREF 252
            MPRGNKELSLFLWDPLSRFLASAANRWTSFIPPPPRHPSDPPRRVLLLHAHPMGTSSFNGACFETTHRSLQEAGHEVQTLSLYEEGFQPCMQASDIREYMKPLSDRHDEGTPDKAALLRYIDLLKWCDALIFVYPTWWYAMPAILKGWIDRTFLPHSAFTLPTPTSPPASVVGLVPCLKNIKKVGVVTTYGSSYQVIRYVGDPGRRIIARGLRPLFDAQCTLLWLGMYSCDTASQAEREDFLAEVNSYMREF
Sbjct:    1 MPRGNKELSLFLWDPLSRFLASAANRWTSFIPPPPRHPSDPPRRVLLLHAHPMGTSSFNGACFETTHRSLQEAGHEVQTLSLYEEGFQPCMQASDIREYMKPLSDRHDEGTPDKAALLRYIDLLKWCDALIFVYPTWWYAMPAILKGWIDRTFLPHSAFTLPTPTSPPASVVGLVPCLKNIKKVGVVTTYGSSYQVIRYVGDPGRRIIARGLRPLFDAQCTLLWLGMYSCDTASQAEREDFLAEVNSYMREF 252          
BLAST of EWM26895.1 vs. NCBI_GenBank
Match: gi|553193328|ref|XP_005855753.1| (nad h dehydrogenase, partial [Nannochloropsis gaditana CCMP526] >gi|422293308|gb|EKU20608.1| nad h dehydrogenase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 298.13 bits (762), Expect = 1.704e-100
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0
Query:    1 MPRGNKELSLFLWDPLSRFLASAANRWTSFIPPPPRHPSDPPRRVLLLHAHPMGTSSFNGACFETTHRSLQEAGHEVQTLSLYEEGFQPCMQASDIREYMKPLSDRHDEGTPDKAALLRYIDLLKWCDALIFVYPTWWYAM 141
            MPRGNKELSLFLWDPLSRFLASAANRWTSFIPPPPRHPSDPPRRVLLLHAHPMGTSSFNGACFETTHRSLQEAGHEVQTLSLYEEGFQPCMQASDIREYMKPLSDRHDEGTPDKAALLRYIDLLKWCDALIFVYPTWWYAM
Sbjct:    6 MPRGNKELSLFLWDPLSRFLASAANRWTSFIPPPPRHPSDPPRRVLLLHAHPMGTSSFNGACFETTHRSLQEAGHEVQTLSLYEEGFQPCMQASDIREYMKPLSDRHDEGTPDKAALLRYIDLLKWCDALIFVYPTWWYAM 146          
BLAST of EWM26895.1 vs. NCBI_GenBank
Match: gi|298710988|emb|CBJ32295.1| (NAD(P)H dehydrogenase (quinone) [Ectocarpus siliculosus])

HSP 1 Score: 212.616 bits (540), Expect = 2.828e-65
Identity = 105/242 (43.39%), Postives = 143/242 (59.09%), Query Frame = 0
Query:   15 PLSRFLASAA---NRWTSFIPPPPRHPSDPPRRVLLLHAHPMGTS-SFNGACFETTHRSLQEAGHEVQTLSLYEEGFQPCMQASDIREYMKPLSDRHDEGTPDKAALLRYIDLLKWCDALIFVYPTWWYAMPAILKGWIDRTFLPHSAFTLPTPTSPPASVVGLVPCLKNIKKVGVVTTYGSSYQVIRYVGDPGRRIIARGLRPLFDAQCTLLWLGMYSCDTASQAEREDFLAEVNSYMREF 252
            PLS  LA A    NR TSF+PPPP        +++++  HP G   SF  A  E    SL++AGH+V+  +LY+E FQ  +   + R +M    D           +  ++D L+WC  L+  YPTWWY+ PAILKGW+DRT +P  AF LP     P    G +  L NI+KVG+VTT+G+S+  +RYVGDPGRRI++RGLRPLF  +CTLLW G+Y  +     +R  FL +V    R+F
Sbjct:   13 PLSSLLAGAMRALNRVTSFVPPPPSGKDGVQEKIVVVQVHPNGKDPSFTLALGEAVRDSLKDAGHQVRVTNLYQEQFQAALGGQEHRGFMTAFRDGQVA-----EDVKGHVDDLQWCSGLVLCYPTWWYSFPAILKGWLDRTLMPGVAFDLPNGVEKPHPKTGFISRLTNIRKVGMVTTFGNSFWNVRYVGDPGRRIVSRGLRPLFHPECTLLWKGLYDVEKCPPQDRSAFLEDVGRSFRDF 249          
BLAST of EWM26895.1 vs. NCBI_GenBank
Match: gi|551599786|ref|XP_005781686.1| (NAD(P)H dehydrogenase [Emiliania huxleyi CCMP1516] >gi|485634482|gb|EOD29257.1| NAD(P)H dehydrogenase [Emiliania huxleyi CCMP1516])

HSP 1 Score: 181.8 bits (460), Expect = 2.591e-53
Identity = 95/253 (37.55%), Postives = 146/253 (57.71%), Query Frame = 0
Query:   11 FLWDPLSRFLASAANRWTSFIPPPPRHPSD-PPRRVLLLHAHPMGTSSFNGACFETTHRSLQEAGHEVQTLSLYEEGFQPCMQASDIREYMKPLSDRHDEGTPDKAA--LLRYIDLLKWCDALIFVYPTWWYAMPAILKGWIDRTFLP------HSAFTLPTPTSPPASVVG---LVPCLKNIKKVGVVTTYGSSYQVIRYVGDPGRRIIARGLRPLFDAQCTLLWLGMYSCDTASQAEREDFLAEVNSYMRE 251
             LW+P +R+LA   N  T+ +PPPPR P D   R++LL+HAHP  T S++ A  +      +E GH ++   LY+E F P M A++   Y++       +  P + A  +  ++D L+W D+++FVYPTWW+ +PA+LKG+IDR  +P        A+  P       + +G   LV  L N+K+V  ++TYGS   +    GD GR +I  G+R LFD  CT+LW+G+YS D  S  +R DF+ +V   +R+
Sbjct:    1 MLWNPATRWLAKNLNWVTTQVPPPPRSPDDVEKRKILLVHAHPR-TDSYSHALADAVEAGAKEGGHTIRRRDLYKERFSPVMTAAERGAYLRDF-----DMVPKRLASDVRSHLDDLRWADSVVFVYPTWWFNVPAMLKGYIDRVMVPATPGSGQGAWAFPDSNIQGKASIGSGGLVGHLTNVKRVAGISTYGSERYMGLLAGDNGRNMIGTGVRALFDPSCTVLWMGLYSLDFCSDEQRADFIDKVRETIRD 247          
BLAST of EWM26895.1 vs. NCBI_GenBank
Match: gi|503416886|ref|WP_013651547.1| (flavodoxin family protein [Polymorphum gilvum] >gi|326412164|gb|ADZ69227.1| NAD(P)H dehydrogenase (Quinone) [Polymorphum gilvum SL003B-26A1])

HSP 1 Score: 170.629 bits (431), Expect = 1.351e-49
Identity = 83/209 (39.71%), Postives = 128/209 (61.24%), Query Frame = 0
Query:   44 RVLLLHAHPMGTSSFNGACFETTHRSLQEAGHEVQTLSLYEEGFQPCMQASDIREYMKPLSDRHDEGTPDKAALLRYIDLLKWCDALIFVYPTWWYAMPAILKGWIDRTFLPHSAFTLPTPTSPPASVVGLVPCLKNIKKVGVVTTYGSSYQVIRYVGDPGRRIIARGLRPLFDAQCTLLWLGMYSCDTASQAEREDFLAEVNSYMREF 252
            R L+++ HP    SFN A   T   SL+ AGHE++ + LY EGFQP M A + R Y       HD G+ +   +  +++ + WC+ L+FVYPTWW+ +PA+LKGW+DR ++PH  F +PT  S      G+ P +++I+K+ VVTT G+S+ V + +G+PGRR + RG+R L   +C  L+L  Y  D+++   R  +LA V   ++ F
Sbjct:    2 RALVVYCHPCA-ESFNAAVLRTVLASLEAAGHEIRLVDLYAEGFQPAMNAEERRGY-------HDHGS-NVEPVRTHVENILWCEMLVFVYPTWWFGLPAMLKGWLDRVWVPHVTFEMPTEAS------GMRPRMQHIRKIAVVTTCGASWWVSKLIGEPGRRTLLRGMRALCAPRCRTLYLAHYKMDSSTSESRSCYLAMVTRRLKRF 195          
BLAST of EWM26895.1 vs. NCBI_GenBank
Match: gi|1072237141|gb|OEU21868.1| (flavo protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 166.392 bits (420), Expect = 2.898e-47
Identity = 86/235 (36.60%), Postives = 128/235 (54.47%), Query Frame = 0
Query:   20 LASAANRWTSFIPPPPRHPSDPPRRVLLLHAHPMGTSSFNGACFETTHRSLQEAGHEVQTLSLYEEGFQPCMQASDIREYMKPLSDRHDEGTPDKAALLRYIDLLKWCDALIFVYPTWWYAMPAILKGWIDRTFLPHSAFTLPTPTSPPASV--VGLVPCLKNIKKVGVVTTYGSSYQVIRYVGDPGRRIIARGLRPLFDAQCTLLWLGMYSCDTASQAEREDFLAEVNSYMREF 252
            L    N++ S++PPPP      PR++L++ +HP+   S++ A   T   + +E GHEVQ + L  E F P +   +   Y    +++ D+  P       YI  LKWCD L FVYPTWW   P  LKG++DRT +PH  +  P   +   S   VGL P L NI++V  ++TYG +  +    GD GRR+I+  + P+F   CT+ W G+YS D  +   R  FL EV + ++E 
Sbjct:   16 LQVTVNQFLSYVPPPPPKNQGAPRKILIVSSHPV-PESYSLAIARTVEETAKEQGHEVQRIDLGLEKFDPVLNKKERLAYFDD-TNKDDKNLPKDVR--GYIQKLKWCDTLFFVYPTWWMNTPGALKGFLDRTLVPHHCWHFPKEETGIKSYLPVGLAPGLLNIEQVYGISTYGCTRPIATLAGDNGRRMISNAILPIFSNDCTIRWHGLYSMDFQTDENRRIFLDEVKAMVKEI 246          
BLAST of EWM26895.1 vs. NCBI_GenBank
Match: gi|1120143533|ref|WP_073013676.1| (flavodoxin family protein [Labrenzia suaedae] >gi|1110307623|emb|SHM47139.1| Putative NADPH-quinone reductase (modulator of drug activity B) [Labrenzia suaedae])

HSP 1 Score: 164.466 bits (415), Expect = 3.872e-47
Identity = 84/209 (40.19%), Postives = 123/209 (58.85%), Query Frame = 0
Query:   44 RVLLLHAHPMGTSSFNGACFETTHRSLQEAGHEVQTLSLYEEGFQPCMQASDIREYMKPLSDRHDEGTPDKAALLRYIDLLKWCDALIFVYPTWWYAMPAILKGWIDRTFLPHSAFTLPTPTSPPASVVGLVPCLKNIKKVGVVTTYGSSYQVIRYVGDPGRRIIARGLRPLFDAQCTLLWLGMYSCDTASQAEREDFLAEVNSYMREF 252
            + L+++ HP    SFN A       +L++AGHEV+   LYEEGF+P M A + R Y       HDEG  +   +  Y+  + WCD L+FVYPTWW+ +PA+LKGW DR ++PH  F +PT         G+ P +++I+K+ VVTT G+S+ V ++VG+PGR+ I RG+R L    C  L+L  Y  DT++   R  +L  V   +  F
Sbjct:    2 KALVIYCHPCA-ESFNAAIRNKVTSTLEKAGHEVRLRDLYEEGFEPAMGADERRRY-------HDEGD-NVVPVESYVADICWCDMLVFVYPTWWFGLPAMLKGWFDRVWVPHVTFGMPTEDK------GMRPLMQHIRKIAVVTTCGASWAVSKWVGEPGRKTIMRGMRALCAPGCKTLYLAHYKMDTSTPESRSRYLNLVARKLSCF 195          
BLAST of EWM26895.1 vs. NCBI_GenBank
Match: gi|1126825101|ref|WP_075216244.1| (NAD(P)H dehydrogenase [Rhizobiales bacterium MIMtkB18])

HSP 1 Score: 162.925 bits (411), Expect = 1.513e-46
Identity = 83/203 (40.89%), Postives = 123/203 (60.59%), Query Frame = 0
Query:   45 VLLLHAHPMGTSSFNGACFETTHRSLQEAGHEVQTLSLYEEGFQPCMQASDIREYMKPLSDRHDEGTPDKAALLRYIDLLKWCDALIFVYPTWWYAMPAILKGWIDRTFLPHSAFTLPTPTSPPASVVGLVPCLKNIKKVGVVTTYGSSYQVIRYVGDPGRRIIARGLRPLFDAQCTLLWLGMYSCDTASQAEREDFLAEVNS 247
            VL+++ HP    SF  A  +     L +AGH V+ + LY +GF+P M A + R Y       HD G  ++A +  ++  LKW +AL+F+YPTWWY +PA+LKGW+DR F+PH AF +PT T       G+   L+NI+++ VVTT G+S+ V + +G+PGRR + RGLR +    C   +  +Y  DT S   R  +LAEV++
Sbjct:    3 VLVVYCHPCA-DSFVAAVKDAALSGLAKAGHAVRIVDLYGDGFEPAMSAEERRRY-------HDAGV-NEAPVADHVAHLKWAEALLFIYPTWWYNLPAMLKGWLDRAFVPHVAFVMPTATQ------GIRGNLRNIRRIDVVTTCGASWHVSKLMGEPGRRTLTRGLRAICHPFCRTSYTALYKMDTVSPERRTRYLAEVSA 190          
BLAST of EWM26895.1 vs. NCBI_GenBank
Match: gi|971490564|ref|WP_058898724.1| (flavodoxin family protein [Pannonibacter phragmitetus] >gi|971240119|gb|ALV27178.1| NAD(P)H dehydrogenase [Pannonibacter phragmitetus])

HSP 1 Score: 162.54 bits (410), Expect = 2.053e-46
Identity = 79/209 (37.80%), Postives = 129/209 (61.72%), Query Frame = 0
Query:   44 RVLLLHAHPMGTSSFNGACFETTHRSLQEAGHEVQTLSLYEEGFQPCMQASDIREYMKPLSDRHDEGTPDKAALLRYIDLLKWCDALIFVYPTWWYAMPAILKGWIDRTFLPHSAFTLPTPTSPPASVVGLVPCLKNIKKVGVVTTYGSSYQVIRYVGDPGRRIIARGLRPLFDAQCTLLWLGMYSCDTASQAEREDFLAEVNSYMREF 252
            + L++++HP+   SFN +  +     LQ+AGHEV+ + LY EGFQP M A + R Y     D      P KA    +++ + WCD ++FVYPTWW+ +PA+LKGW DR ++PH  F +P+  +      G+ P +++I+K+ +VTT G+S+ V + +G+PGR+ I RGLR L   +C  L+L  Y  D+++Q  R+ ++ +V   + +F
Sbjct:    2 KALVVYSHPV-PESFNASMRDHVVSVLQQAGHEVRLIDLYAEGFQPAMSADERRGY----HDVDSNVLPVKA----HVEAILWCDMMVFVYPTWWFGLPAMLKGWFDRVWVPHVTFEMPSEHT------GMRPKMQHIRKIAIVTTCGASWFVSKLMGEPGRKTIMRGLRALCAPRCKTLYLAHYRMDSSTQESRDRYVKKVARRLAKF 195          
BLAST of EWM26895.1 vs. NCBI_GenBank
Match: gi|913723823|ref|WP_050472379.1| (flavodoxin family protein [Pannonibacter phragmitetus] >gi|907658352|gb|KND19655.1| NAD(P)H dehydrogenase [Pannonibacter phragmitetus])

HSP 1 Score: 161.77 bits (408), Expect = 3.415e-46
Identity = 79/209 (37.80%), Postives = 129/209 (61.72%), Query Frame = 0
Query:   44 RVLLLHAHPMGTSSFNGACFETTHRSLQEAGHEVQTLSLYEEGFQPCMQASDIREYMKPLSDRHDEGTPDKAALLRYIDLLKWCDALIFVYPTWWYAMPAILKGWIDRTFLPHSAFTLPTPTSPPASVVGLVPCLKNIKKVGVVTTYGSSYQVIRYVGDPGRRIIARGLRPLFDAQCTLLWLGMYSCDTASQAEREDFLAEVNSYMREF 252
            + L++++HP+   SFN +  +     L++AGHEV+ L LY EGFQP M A + R Y     D      P KA    +++ + WCD ++FVYPTWW+ +PA+LKGW DR ++PH  F +P+  +      G+ P +++I+K+ +VTT G+S+ V + +G+PGR+ I RGLR L   +C  L+L  Y  D+++Q  R+ ++ +V   + +F
Sbjct:    2 KALVVYSHPV-PESFNASMRDHVVSVLKQAGHEVRLLDLYAEGFQPAMSADERRGY----HDVDSNVLPVKA----HVEAILWCDMMVFVYPTWWFGLPAMLKGWFDRVWVPHVTFEMPSEHT------GMRPKMQHIRKIAIVTTCGASWFVSKLMGEPGRKTIMRGLRALCAPRCKTLYLAHYRMDSSTQESRDRYVKKVARRLAKF 195          
The following BLAST results are available for this feature:
BLAST of EWM26895.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109025|gb|EWM26895.1|0.000e+0100.00nad h dehydrogenase [Nannochloropsis gaditana][more]
gi|553193328|ref|XP_005855753.1|1.704e-100100.00nad h dehydrogenase, partial [Nannochloropsis gadi... [more]
gi|298710988|emb|CBJ32295.1|2.828e-6543.39NAD(P)H dehydrogenase (quinone) [Ectocarpus silicu... [more]
gi|551599786|ref|XP_005781686.1|2.591e-5337.55NAD(P)H dehydrogenase [Emiliania huxleyi CCMP1516]... [more]
gi|503416886|ref|WP_013651547.1|1.351e-4939.71flavodoxin family protein [Polymorphum gilvum] >gi... [more]
gi|1072237141|gb|OEU21868.1|2.898e-4736.60flavo protein [Fragilariopsis cylindrus CCMP1102][more]
gi|1120143533|ref|WP_073013676.1|3.872e-4740.19flavodoxin family protein [Labrenzia suaedae] >gi|... [more]
gi|1126825101|ref|WP_075216244.1|1.513e-4640.89NAD(P)H dehydrogenase [Rhizobiales bacterium MIMtk... [more]
gi|971490564|ref|WP_058898724.1|2.053e-4637.80flavodoxin family protein [Pannonibacter phragmite... [more]
gi|913723823|ref|WP_050472379.1|3.415e-4637.80flavodoxin family protein [Pannonibacter phragmite... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3781rna3781Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications