EWM26927.1, cds3747 (CDS) Nannochloropsis gaditana

Overview
NameEWM26927.1
Unique Namecds3747
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:1149594..1149818 +
Alignment locationCM002461.1:1149974..1150105 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26927.1
Productcoatomer protein subunit epsilon
Orig transcript idgnl|cribi|Naga_100791g2.10683.mrna
GeneCPC22
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1149594..1149818 +
CM002461.1supercontigCM002461.1:1149974..1150105 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006890retrograde vesicle-mediated transport, Golgi to ER
Vocabulary: Cellular Component
TermDefinition
GO:0005794Golgi apparatus
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
Vocabulary: INTERPRO
TermDefinition
IPR006822Coatomer_esu
Homology
[Close]
BLAST of EWM26927.1 vs. NCBI_GenBank
Match: gi|585109060|gb|EWM26927.1| (coatomer protein subunit epsilon [Nannochloropsis gaditana])

HSP 1 Score: 244.973 bits (624), Expect = 3.198e-82
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 
Query:    1 MEREDFRMQGERTVATPKTDNSLPYLVRSRHSHLPQLIPPGLFSRHFQSALQAVRWFAEYEAHPEQREAVVGKFQTSLQETATASCPSLQTMAAIIFLKEGLVKDALRAVHRGTTLEQ 118
            MEREDFRMQGERTVATPKTDNSLPYLVRSRHSHLPQLIPPGLFSRHFQSALQAVRWFAEYEAHPEQREAVVGKFQTSLQETATASCPSLQTMAAIIFLKEGLVKDALRAVHRGTTLEQ
Sbjct:    1 MEREDFRMQGERTVATPKTDNSLPYLVRSRHSHLPQLIPPGLFSRHFQSALQAVRWFAEYEAHPEQREAVVGKFQTSLQETATASCPSLQTMAAIIFLKEGLVKDALRAVHRGTTLEQ 118
[Close]
BLAST of EWM26927.1 vs. NCBI_GenBank
Match: gi|553191647|ref|XP_005855422.1| (coatomer subunit epsilon [Nannochloropsis gaditana CCMP526] >gi|422293629|gb|EKU20929.1| coatomer subunit epsilon [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 142.895 bits (359), Expect = 5.817e-40
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 
Query:   50 ALQAVRWFAEYEAHPEQREAVVGKFQTSLQETATASCPSLQTMAAIIFLKEGLVKDALRAVHRGTTLEQ 118
            ALQAVRWFAEYEAHPEQREAVVGKFQTSLQETATASCPSLQTMAAIIFLKEGLVKDALRAVHRGTTLEQ
Sbjct:   46 ALQAVRWFAEYEAHPEQREAVVGKFQTSLQETATASCPSLQTMAAIIFLKEGLVKDALRAVHRGTTLEQ 114
[Close]
BLAST of EWM26927.1 vs. NCBI_GenBank
Match: gi|298711073|emb|CBJ26468.1| (Vesicle coat complex COPI, epsilon subunit [Ectocarpus siliculosus])

HSP 1 Score: 61.2326 bits (147), Expect = 1.129e-8
Identity = 28/69 (40.58%), Postives = 46/69 (66.67%), Query Frame = 0 
Query:   50 ALQAVRWFAEYEAHPEQREAVVGKFQTSLQETATASCPSLQTMAAIIFLKEGLVKDALRAVHRGTTLEQ 118
            ALQAVR  A+Y ++PE RE V+   +  L +  + + P++Q +AA +F  EG +K+A+R++  G T+EQ
Sbjct:   68 ALQAVRLMAQYLSNPESREIVIETLKMWLTDPGSCNNPTVQLLAAAVFTHEGDLKEAVRSIRNGVTMEQ 136
The following BLAST results are available for this feature:
BLAST of EWM26927.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585109060|gb|EWM26927.1|3.198e-82100.00coatomer protein subunit epsilon [Nannochloropsis ... [more]
gi|553191647|ref|XP_005855422.1|5.817e-40100.00coatomer subunit epsilon [Nannochloropsis gaditana... [more]
gi|298711073|emb|CBJ26468.1|1.129e-840.58Vesicle coat complex COPI, epsilon subunit [Ectoca... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3756rna3756Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications