EWM26935.1, cds3739 (CDS) Nannochloropsis gaditana

Overview
NameEWM26935.1
Unique Namecds3739
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:1118292..1118423 +
Alignment locationCM002461.1:1118685..1118805 +
Alignment locationCM002461.1:1118984..1119096 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26935.1
ProductActin cross-linking
Orig transcript idgnl|cribi|Naga_101115g1.7777.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1118292..1118423 +
CM002461.1supercontigCM002461.1:1118685..1118805 +
CM002461.1supercontigCM002461.1:1118984..1119096 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR008999Actin_cross-linking
Homology
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BLAST of EWM26935.1 vs. NCBI_GenBank
Match: gi|585109072|gb|EWM26935.1| (Actin cross-linking [Nannochloropsis gaditana])

HSP 1 Score: 253.447 bits (646), Expect = 1.985e-85
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 
Query:    1 MNRTDLRISSTMVAHNQSAGHVTFRPFSKPENPEAPYLTVQSDKPVALPAYSEHSLWTVEHLPNDEVALKGYNGHYLSVNSHFQVHMAKELSKESHLQFVTHADFPGCVAIKETVHHTFLA 121
            MNRTDLRISSTMVAHNQSAGHVTFRPFSKPENPEAPYLTVQSDKPVALPAYSEHSLWTVEHLPNDEVALKGYNGHYLSVNSHFQVHMAKELSKESHLQFVTHADFPGCVAIKETVHHTFLA
Sbjct:    1 MNRTDLRISSTMVAHNQSAGHVTFRPFSKPENPEAPYLTVQSDKPVALPAYSEHSLWTVEHLPNDEVALKGYNGHYLSVNSHFQVHMAKELSKESHLQFVTHADFPGCVAIKETVHHTFLA 121
The following BLAST results are available for this feature:
BLAST of EWM26935.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585109072|gb|EWM26935.1|1.985e-85100.00Actin cross-linking [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3748rna3748Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications