EWM26941.1, cds3732 (CDS) Nannochloropsis gaditana

Overview
NameEWM26941.1
Unique Namecds3732
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:1105214..1105632 -
Alignment locationCM002461.1:1104811..1105093 -
Alignment locationCM002461.1:1104544..1104568 -

Link to JBrowse

Properties
Property NameValue
Start range1104544
Start range.
Protein idEWM26941.1
Producttrna-dihydrouridine synthase 3
Partialtrue
Orig transcript idgnl|cribi|Naga_101321g2.2570.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1105214..1105632 -
CM002461.1supercontigCM002461.1:1104811..1105093 -
CM002461.1supercontigCM002461.1:1104544..1104568 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
Homology
BLAST of EWM26941.1 vs. NCBI_GenBank
Match: gi|585109082|gb|EWM26941.1| (trna-dihydrouridine synthase 3, partial [Nannochloropsis gaditana])

HSP 1 Score: 502.671 bits (1293), Expect = 4.257e-180
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0
Query:    1 MCLTYHSLKEKGANHPAPPPQENPYTSYLPQTWVSTLFHVLKLPTFPIKVLVYQEKYMSLGTAATGASLSSVATSEAPSTQIEDASTPKQNALPNATEDEEKTGQNQSQANGQENEHKANDHGAIHAGKGWESDVIVKAEYRIPKFVPISAPAPSSLPPSDLPLHPRHDTPVADTPDAKAKKKKGGRNHKRPRDDAQAEGGEGLCRSFLEKRCLYGEACKFSHDVRGYLARKPPDLGSHCPV 242
            MCLTYHSLKEKGANHPAPPPQENPYTSYLPQTWVSTLFHVLKLPTFPIKVLVYQEKYMSLGTAATGASLSSVATSEAPSTQIEDASTPKQNALPNATEDEEKTGQNQSQANGQENEHKANDHGAIHAGKGWESDVIVKAEYRIPKFVPISAPAPSSLPPSDLPLHPRHDTPVADTPDAKAKKKKGGRNHKRPRDDAQAEGGEGLCRSFLEKRCLYGEACKFSHDVRGYLARKPPDLGSHCPV
Sbjct:    1 MCLTYHSLKEKGANHPAPPPQENPYTSYLPQTWVSTLFHVLKLPTFPIKVLVYQEKYMSLGTAATGASLSSVATSEAPSTQIEDASTPKQNALPNATEDEEKTGQNQSQANGQENEHKANDHGAIHAGKGWESDVIVKAEYRIPKFVPISAPAPSSLPPSDLPLHPRHDTPVADTPDAKAKKKKGGRNHKRPRDDAQAEGGEGLCRSFLEKRCLYGEACKFSHDVRGYLARKPPDLGSHCPV 242          
BLAST of EWM26941.1 vs. NCBI_GenBank
Match: gi|695384275|ref|XP_009517953.1| (hypothetical protein PHYSODRAFT_324006 [Phytophthora sojae] >gi|348690864|gb|EGZ30678.1| hypothetical protein PHYSODRAFT_324006 [Phytophthora sojae])

HSP 1 Score: 63.1586 bits (152), Expect = 6.734e-8
Identity = 36/78 (46.15%), Postives = 46/78 (58.97%), Query Frame = 0
Query:  167 RHDTPVADTPDAKA-KKKKGGRNHKRPRDDAQAEGGEGLCRSFLE-KRCLYGEACKFSHDVRGYLARKPPDLGSHCPV 242
            R  T V D  D +  KKK+GG   KRP D  + +  + LCR     + C +G++CKFSHDV  Y+ RKP DLG  CPV
Sbjct:   62 RDATEVKDGRDREGGKKKRGGTFKKRPAD-VEEDPADLLCRPVAAGEGCQFGDSCKFSHDVDDYMKRKPKDLGERCPV 138          
BLAST of EWM26941.1 vs. NCBI_GenBank
Match: gi|926651671|ref|XP_013792377.1| (PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like, partial [Limulus polyphemus])

HSP 1 Score: 62.003 bits (149), Expect = 1.130e-7
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 0
Query:  181 KKKKGGRNHKRPRDDAQAEGGEGLCRSFL-EKRCLYGEACKFSHDVRGYLARKPPDLGSHCPV 242
            KKK  GRN +R R  A+    E LC  FL E  C YG +C FSH++  +LA KPPDLG++C +
Sbjct:   67 KKKLKGRNKQR-RQKARIPKDEKLCLKFLSENSCPYGTSCCFSHNIDSFLAHKPPDLGTNCYI 128          
BLAST of EWM26941.1 vs. NCBI_GenBank
Match: gi|1214702187|gb|OWZ14424.1| (TRNA-dihydrouridine synthase [Phytophthora megakarya])

HSP 1 Score: 62.3882 bits (150), Expect = 1.184e-7
Identity = 39/107 (36.45%), Postives = 54/107 (50.47%), Query Frame = 0
Query:  140 EYRI---PKFVPISAPAPSSLPPSDLPLHPRHDTPVADTPDAKAKKKKGGRNHKRPRDDAQAEGGEGLCRSFLE-KRCLYGEACKFSHDVRGYLARKPPDLGSHCPV 242
            E+R+   P  +    P P+  P +    H +  +   D  D +  KKK G   KRP D  Q +  + LCR     + C +G+ CKFSHD+  Y+ RKP DLG  CPV
Sbjct:   28 EHRVGEAPIKIAFLKPKPAPKPATSEYGHEKDASQAKDDRDREGGKKKRGTFKKRPADVDQ-DPADLLCRPVASGEGCQFGDNCKFSHDINDYMKRKPKDLGERCPV 133          
BLAST of EWM26941.1 vs. NCBI_GenBank
Match: gi|301119491|ref|XP_002907473.1| (tRNA-dihydrouridine synthase 3 [Phytophthora infestans T30-4] >gi|262105985|gb|EEY64037.1| tRNA-dihydrouridine synthase 3 [Phytophthora infestans T30-4])

HSP 1 Score: 62.003 bits (149), Expect = 1.768e-7
Identity = 33/72 (45.83%), Postives = 42/72 (58.33%), Query Frame = 0
Query:  172 VADTPDAKAKKKKGGRNHKRPRDDAQAEGGEGLCRSFLE-KRCLYGEACKFSHDVRGYLARKPPDLGSHCPV 242
            V D  D    KKK G   KRP D A+ +  + LCR     + C +G++CKFSHD+  Y+ RKP DLG  CPV
Sbjct:   70 VKDDRDRDGGKKKRGTFKKRPID-AEQDPADLLCRPVASGEGCKFGDSCKFSHDIDDYMKRKPKDLGERCPV 140          
BLAST of EWM26941.1 vs. NCBI_GenBank
Match: gi|1173962192|gb|OQS07990.1| (tRNA-dihydrouridine synthase 3 [Thraustotheca clavata])

HSP 1 Score: 60.8474 bits (146), Expect = 4.748e-7
Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 0
Query:  164 LHPRHDTPVADTPDAKAKKKKGGRNHKRPRDDAQAEGGEGLCRSFLE-KRCLYGEACKFSHDVRGYLARKPPDLGSHCPV 242
            + P    PV    D + ++++G    KRPRD A+ +    LCR     + C+YG++C+FSHDV  +L R+P DLG  CPV
Sbjct:  367 VKPEFRRPVQPKQDGEGERERGT-FKKRPRDPAE-DPANLLCRGIAAGEGCVYGDSCRFSHDVEDFLKRRPKDLGDSCPV 444          
The following BLAST results are available for this feature:
BLAST of EWM26941.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585109082|gb|EWM26941.1|4.257e-180100.00trna-dihydrouridine synthase 3, partial [Nannochlo... [more]
gi|695384275|ref|XP_009517953.1|6.734e-846.15hypothetical protein PHYSODRAFT_324006 [Phytophtho... [more]
gi|926651671|ref|XP_013792377.1|1.130e-749.21PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P... [more]
gi|1214702187|gb|OWZ14424.1|1.184e-736.45TRNA-dihydrouridine synthase [Phytophthora megakar... [more]
gi|301119491|ref|XP_002907473.1|1.768e-745.83tRNA-dihydrouridine synthase 3 [Phytophthora infes... [more]
gi|1173962192|gb|OQS07990.1|4.748e-740.00tRNA-dihydrouridine synthase 3 [Thraustotheca clav... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3741rna3741Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications