EWM26943.1, cds3730 (CDS) Nannochloropsis gaditana

Overview
NameEWM26943.1
Unique Namecds3730
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:1101108..1101283 -
Alignment locationCM002461.1:1101001..1101025 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26943.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101585g2.7119.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1101108..1101283 -
CM002461.1supercontigCM002461.1:1101001..1101025 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM26943.1 vs. NCBI_GenBank
Match: gi|553176486|ref|XP_005852380.1| (hypothetical protein NGA_0693200 [Nannochloropsis gaditana CCMP526] >gi|422300063|gb|EKU23505.1| hypothetical protein NGA_0693200 [Nannochloropsis gaditana CCMP526] >gi|585109087|gb|EWM26943.1| hypothetical protein Naga_101585g2 [Nannochloropsis gaditana])

HSP 1 Score: 134.42 bits (337), Expect = 5.418e-40
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 
Query:    1 MKSQVPLSTFPSNRPIEKHTSHDSSLGISPMDSVRHPFESIAETINGAAVLLDAGAGEVSLAGQAV 66
            MKSQVPLSTFPSNRPIEKHTSHDSSLGISPMDSVRHPFESIAETINGAAVLLDAGAGEVSLAGQAV
Sbjct:    1 MKSQVPLSTFPSNRPIEKHTSHDSSLGISPMDSVRHPFESIAETINGAAVLLDAGAGEVSLAGQAV 66
The following BLAST results are available for this feature:
BLAST of EWM26943.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|553176486|ref|XP_005852380.1|5.418e-40100.00hypothetical protein NGA_0693200 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3739rna3739Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications