EWM26967.1, cds3707 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26967.1 vs. NCBI_GenBank
Match: gi|585109129|gb|EWM26967.1| (tryptophan-rich sensory-like protein [Nannochloropsis gaditana]) HSP 1 Score: 781.171 bits (2016), Expect = 0.000e+0 Identity = 380/380 (100.00%), Postives = 380/380 (100.00%), Query Frame = 0
Query: 1 MKQTTMLPLSLVCRANCLVLGLLLLLAATHAFRLKGLPSTTRQTSKLLLHPSPHQTLITGQPSRPTRITIAYLSSFARRVAPSRSMVVAASGTEYLDNLPSRASKKGPPMQWGALGTWILATALQFATIVAFMYGMEKAFLRFNLSKQASIWLVRAFFAFMSLRSRVFSILDNSRPTVAMEDRKRRLRKRPSWMPPAKAFPVIWISIGVLRTIASSLVYETTNTLLSPALLAFVLHLCVRSWGVFGLAFGRECGQDVCTYPALGRESASAQCRVDYDRERVGHLDMEAEWSRAFVSVQKTAGMKRNACLVTYRSVGARVCSEHAPFDLGGILSVLERASRYKFVMEYNKRSIRKTIRSSSFINSERNNQSIASKRDYCGD 380
MKQTTMLPLSLVCRANCLVLGLLLLLAATHAFRLKGLPSTTRQTSKLLLHPSPHQTLITGQPSRPTRITIAYLSSFARRVAPSRSMVVAASGTEYLDNLPSRASKKGPPMQWGALGTWILATALQFATIVAFMYGMEKAFLRFNLSKQASIWLVRAFFAFMSLRSRVFSILDNSRPTVAMEDRKRRLRKRPSWMPPAKAFPVIWISIGVLRTIASSLVYETTNTLLSPALLAFVLHLCVRSWGVFGLAFGRECGQDVCTYPALGRESASAQCRVDYDRERVGHLDMEAEWSRAFVSVQKTAGMKRNACLVTYRSVGARVCSEHAPFDLGGILSVLERASRYKFVMEYNKRSIRKTIRSSSFINSERNNQSIASKRDYCGD
Sbjct: 1 MKQTTMLPLSLVCRANCLVLGLLLLLAATHAFRLKGLPSTTRQTSKLLLHPSPHQTLITGQPSRPTRITIAYLSSFARRVAPSRSMVVAASGTEYLDNLPSRASKKGPPMQWGALGTWILATALQFATIVAFMYGMEKAFLRFNLSKQASIWLVRAFFAFMSLRSRVFSILDNSRPTVAMEDRKRRLRKRPSWMPPAKAFPVIWISIGVLRTIASSLVYETTNTLLSPALLAFVLHLCVRSWGVFGLAFGRECGQDVCTYPALGRESASAQCRVDYDRERVGHLDMEAEWSRAFVSVQKTAGMKRNACLVTYRSVGARVCSEHAPFDLGGILSVLERASRYKFVMEYNKRSIRKTIRSSSFINSERNNQSIASKRDYCGD 380
BLAST of EWM26967.1 vs. NCBI_GenBank
Match: gi|255077215|ref|XP_002502255.1| (tryptophan-rich sensory-like protein [Micromonas commoda] >gi|226517520|gb|ACO63513.1| tryptophan-rich sensory-like protein [Micromonas commoda]) HSP 1 Score: 107.457 bits (267), Expect = 1.825e-22 Identity = 58/127 (45.67%), Postives = 78/127 (61.42%), Query Frame = 0
Query: 113 GALGTWILATALQFATIVAFMYGMEKAFLRFNLSKQASIWLVRAFFAFMSLRSRVFSILDNSRPTVAMEDRKRRLRKRPSWMPPAKAFPVIWISIGVLRTIASSLVYETTNTLLSPALLAFVLHLCV 239
GA+ + L TA+QF+ +V F + R L LV A+F F +L+SRVFS L+ SRP V E + R+RPSWMPP AFP+IW +I VLR ++S +V+ TT TL +PA A +LHL V
Sbjct: 166 GAIWRYFLCTAVQFSVMVWFSMWLNVGISRSPLDLTYQKALVGAWFGFNALKSRVFSPLNASRPKVEGEKDAIKERRRPSWMPPPIAFPIIWTTIAVLRAVSSVVVFSTTGTLNNPAHFAMLLHLAV 292
BLAST of EWM26967.1 vs. NCBI_GenBank
Match: gi|1199292944|gb|OUS48030.1| (tryptophan-rich sensory protein [Ostreococcus tauri]) HSP 1 Score: 103.605 bits (257), Expect = 1.494e-21 Identity = 54/132 (40.91%), Postives = 86/132 (65.15%), Query Frame = 0
Query: 110 MQWGALGTWILATALQFATIVAFMYGMEKAFL-RFNLSKQASIWLVRAFFAF-MSLRSRVFSILDNSRPTVAMEDRKRRLRKRPSWMPPAKAFPVIWISIGVLRTIASSLVYETTNTLLSPALLAFVLHLCV 239
+ +GA+ ++ ATA + + I AF+Y ++ A L + + S + + A F ++LRSRVFS L+ SRP +A E ++ RKRPSW PPA FP++WIS+ LR++++ LV+ TT LL PA+++ V HL +
Sbjct: 95 LDFGAVARYVAATAFEVSAIGAFLYFVQMAGLAKLHASNLGAAKAITAVIFFGLALRSRVFSPLNASRPKIANERLSKKQRKRPSWTPPAVVFPLVWISMAFLRSLSTMLVFTTTGNLLHPAVMSLVAHLSI 226
BLAST of EWM26967.1 vs. NCBI_GenBank
Match: gi|693499883|emb|CEF97935.1| (TspO/MBR-related protein [Ostreococcus tauri]) HSP 1 Score: 101.679 bits (252), Expect = 2.229e-21 Identity = 54/132 (40.91%), Postives = 86/132 (65.15%), Query Frame = 0
Query: 110 MQWGALGTWILATALQFATIVAFMYGMEKAFL-RFNLSKQASIWLVRAFFAF-MSLRSRVFSILDNSRPTVAMEDRKRRLRKRPSWMPPAKAFPVIWISIGVLRTIASSLVYETTNTLLSPALLAFVLHLCV 239
+ +GA+ ++ ATA + + I AF+Y ++ A L + + S + + A F ++LRSRVFS L+ SRP +A E ++ RKRPSW PPA FP++WIS+ LR++++ LV+ TT LL PA+++ V HL +
Sbjct: 31 LDFGAVARYVAATAFEVSAIGAFLYFVQMAGLAKLHASNLGAAKAITAVIFFGLALRSRVFSPLNASRPKIANERLSKKQRKRPSWTPPAVVFPLVWISMAFLRSLSTMLVFTTTGNLLHPAVMSLVAHLSI 162
BLAST of EWM26967.1 vs. NCBI_GenBank
Match: gi|308803931|ref|XP_003079278.1| (COG3476: Tryptophan-rich sensory protein (ISS) [Ostreococcus tauri]) HSP 1 Score: 100.908 bits (250), Expect = 1.356e-20 Identity = 53/131 (40.46%), Postives = 80/131 (61.07%), Query Frame = 0
Query: 110 MQWGALGTWILATALQFATIVAFMY-GMEKAFLRFNLSKQASIWLVRAFFAFMSLRSRVFSILDNSRPTVAMEDRKRRLRKRPSWMPPAKAFPVIWISIGVLRTIASSLVYETTNTLLSPALLAFVLHLCV 239
+ +GA+ ++ ATA + + I AF+Y G KA + F ++LRSRVFS L+ SRP +A E ++ RKRPSW PPA FP++WIS+ LR++++ LV+ TT LL PA+++ V HL +
Sbjct: 95 LDFGAVARYVAATAFEVSAIGAFLYFGAAKA-------------ITAVIFFGLALRSRVFSPLNASRPKIANERLSKKQRKRPSWTPPAVVFPLVWISMAFLRSLSTMLVFTTTGNLLHPAVMSLVAHLSI 212
BLAST of EWM26967.1 vs. NCBI_GenBank
Match: gi|298707586|emb|CBJ30165.1| (tryptophan-rich sensory-like protein [Ectocarpus siliculosus]) HSP 1 Score: 97.8265 bits (242), Expect = 1.380e-19 Identity = 53/135 (39.26%), Postives = 85/135 (62.96%), Query Frame = 0
Query: 108 PPMQWGALGTWILATALQFATIVAFMYGMEKAFLRFNLSK--QASIWLVRAFFAFMSLRSRVFSILDNSRPTVAMEDRKRRLRKRPSWMPPAKAFPVIWISIGVLRTIASSLVYETT-NTLLSPALLAFVLHLCV 239
PP+ A+ +I TA +F I+ + M+ L +K Q +++L F F++++SR FS+L+ RP++A E ++ R+RP WMPP KAFPVIWI+IGVLR +++++V+E L++ + A VLHL V
Sbjct: 86 PPLDVAAVAKYIAGTAGEFTIIMGLLALMQGKLLPRLPAKWAQRTVFLT---FGFLAMKSRTFSLLNARRPSLAKEKEEKIERRRPDWMPPIKAFPVIWITIGVLRALSTAMVWEALGGNLVATPIAAMVLHLSV 217
BLAST of EWM26967.1 vs. NCBI_GenBank
Match: gi|145347019|ref|XP_001417977.1| (predicted protein, partial [Ostreococcus lucimarinus CCE9901] >gi|144578205|gb|ABO96270.1| predicted protein, partial [Ostreococcus lucimarinus CCE9901]) HSP 1 Score: 87.8113 bits (216), Expect = 4.829e-17 Identity = 40/87 (45.98%), Postives = 58/87 (66.67%), Query Frame = 0
Query: 153 LVRAFFAFMSLRSRVFSILDNSRPTVAMEDRKRRLRKRPSWMPPAKAFPVIWISIGVLRTIASSLVYETTNTLLSPALLAFVLHLCV 239
+V F ++ RSRVFS L+ SRP +A E ++ +KRPSW PPA FP++WIS+G LR +++ LV+ T + PA+LA V HL +
Sbjct: 1 IVAVMFFMLAFRSRVFSPLNASRPKIANERLAKKQKKRPSWTPPAIVFPLVWISMGFLRALSTMLVFAQTGVVTHPAILALVAHLSI 87
BLAST of EWM26967.1 vs. NCBI_GenBank
Match: gi|612387657|ref|XP_007509349.1| (predicted protein [Bathycoccus prasinos] >gi|412990488|emb|CCO19806.1| predicted protein [Bathycoccus prasinos]) HSP 1 Score: 91.2781 bits (225), Expect = 6.032e-17 Identity = 43/82 (52.44%), Postives = 52/82 (63.41%), Query Frame = 0
Query: 164 RSRVFSILDNSRPTVAMEDRKRRLRKRPSWMPPAKAFPVIWISIGVLRTIASSLVYETTNTLLSPALLAFVLHLCVRSWGVF 245
RSR FSILD SRP + E + + RKRP W PPAK FPV+WISI LR+I+S LVYE L ++ VLHL + W F
Sbjct: 188 RSRTFSILDASRPKLITEIKMKEQRKRPEWTPPAKVFPVVWISIAFLRSISSILVYEQVGKLFCFPIMCLVLHLSIGDWWNF 269
BLAST of EWM26967.1 vs. NCBI_GenBank
Match: gi|1115283954|gb|OKH47101.1| (TspO protein [Phormidium tenue NIES-30]) HSP 1 Score: 89.3521 bits (220), Expect = 6.377e-17 Identity = 52/122 (42.62%), Postives = 75/122 (61.48%), Query Frame = 0
Query: 121 ATALQFATIVAFMYGMEKAFLRFNLSKQASIWLVR----AFFAFMSLRSRVFSILDNSRPTVAMEDRKRRLRKRPSWMPPAKAFPVIWISIGVLRTIASSLVYETT-NTLLSPALLAFVLHL 237
AT Q A + ++ M+ AF FNL A +W+ AFFAF++LRSR+FS+LDN+R + R + L +RP W PP AFP++W+SI VLR +++ LV+ T LS L+ +V HL
Sbjct: 49 ATIAQIAAMTGLLWAMDVAFQYFNLGALA-LWVTTSIACAFFAFVTLRSRLFSLLDNTRNS----GRYKSL-QRPGWAPPPLAFPIVWMSIAVLRVVSAYLVWSAMGQTFLSWPLILYVAHL 164
BLAST of EWM26967.1 vs. NCBI_GenBank
Match: gi|1180688045|ref|WP_084173225.1| (TspO protein [Phormidium tenue]) HSP 1 Score: 89.3521 bits (220), Expect = 7.499e-17 Identity = 50/122 (40.98%), Postives = 73/122 (59.84%), Query Frame = 0
Query: 121 ATALQFATIVAFMYGMEKAFLRFNLSKQASIWLVR----AFFAFMSLRSRVFSILDNSRPTVAMEDRKRRLRKRPSWMPPAKAFPVIWISIGVLRTIASSLVYETT-NTLLSPALLAFVLHL 237
AT Q A + ++ M+ AF FNL A +W+ AFFAF++LRSR+FS+LDN+R + + +RP W PP AFP++W+SI VLR +++ LV+ T LS L+ +V HL
Sbjct: 46 ATIAQIAAMTGLLWAMDVAFQYFNLGALA-LWVTTSIACAFFAFVTLRSRLFSLLDNTR-----NSGRYKSLQRPGWAPPPLAFPIVWMSIAVLRVVSAYLVWSAMGQTFLSWPLILYVAHL 161 The following BLAST results are available for this feature:
BLAST of EWM26967.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|