EWM26967.1, cds3707 (CDS) Nannochloropsis gaditana

Overview
NameEWM26967.1
Unique Namecds3707
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:1044214..1044704 +
Alignment locationCM002461.1:1044816..1044905 +
Alignment locationCM002461.1:1045093..1045221 +
Alignment locationCM002461.1:1045272..1045590 +
Alignment locationCM002461.1:1045634..1045747 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26967.1
Producttryptophan-rich sensory-like protein
Orig transcript idgnl|cribi|Naga_100392g2.5848.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1044214..1044704 +
CM002461.1supercontigCM002461.1:1044816..1044905 +
CM002461.1supercontigCM002461.1:1045093..1045221 +
CM002461.1supercontigCM002461.1:1045272..1045590 +
CM002461.1supercontigCM002461.1:1045634..1045747 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR004307TspO_MBR
Homology
BLAST of EWM26967.1 vs. NCBI_GenBank
Match: gi|585109129|gb|EWM26967.1| (tryptophan-rich sensory-like protein [Nannochloropsis gaditana])

HSP 1 Score: 781.171 bits (2016), Expect = 0.000e+0
Identity = 380/380 (100.00%), Postives = 380/380 (100.00%), Query Frame = 0
Query:    1 MKQTTMLPLSLVCRANCLVLGLLLLLAATHAFRLKGLPSTTRQTSKLLLHPSPHQTLITGQPSRPTRITIAYLSSFARRVAPSRSMVVAASGTEYLDNLPSRASKKGPPMQWGALGTWILATALQFATIVAFMYGMEKAFLRFNLSKQASIWLVRAFFAFMSLRSRVFSILDNSRPTVAMEDRKRRLRKRPSWMPPAKAFPVIWISIGVLRTIASSLVYETTNTLLSPALLAFVLHLCVRSWGVFGLAFGRECGQDVCTYPALGRESASAQCRVDYDRERVGHLDMEAEWSRAFVSVQKTAGMKRNACLVTYRSVGARVCSEHAPFDLGGILSVLERASRYKFVMEYNKRSIRKTIRSSSFINSERNNQSIASKRDYCGD 380
            MKQTTMLPLSLVCRANCLVLGLLLLLAATHAFRLKGLPSTTRQTSKLLLHPSPHQTLITGQPSRPTRITIAYLSSFARRVAPSRSMVVAASGTEYLDNLPSRASKKGPPMQWGALGTWILATALQFATIVAFMYGMEKAFLRFNLSKQASIWLVRAFFAFMSLRSRVFSILDNSRPTVAMEDRKRRLRKRPSWMPPAKAFPVIWISIGVLRTIASSLVYETTNTLLSPALLAFVLHLCVRSWGVFGLAFGRECGQDVCTYPALGRESASAQCRVDYDRERVGHLDMEAEWSRAFVSVQKTAGMKRNACLVTYRSVGARVCSEHAPFDLGGILSVLERASRYKFVMEYNKRSIRKTIRSSSFINSERNNQSIASKRDYCGD
Sbjct:    1 MKQTTMLPLSLVCRANCLVLGLLLLLAATHAFRLKGLPSTTRQTSKLLLHPSPHQTLITGQPSRPTRITIAYLSSFARRVAPSRSMVVAASGTEYLDNLPSRASKKGPPMQWGALGTWILATALQFATIVAFMYGMEKAFLRFNLSKQASIWLVRAFFAFMSLRSRVFSILDNSRPTVAMEDRKRRLRKRPSWMPPAKAFPVIWISIGVLRTIASSLVYETTNTLLSPALLAFVLHLCVRSWGVFGLAFGRECGQDVCTYPALGRESASAQCRVDYDRERVGHLDMEAEWSRAFVSVQKTAGMKRNACLVTYRSVGARVCSEHAPFDLGGILSVLERASRYKFVMEYNKRSIRKTIRSSSFINSERNNQSIASKRDYCGD 380          
BLAST of EWM26967.1 vs. NCBI_GenBank
Match: gi|255077215|ref|XP_002502255.1| (tryptophan-rich sensory-like protein [Micromonas commoda] >gi|226517520|gb|ACO63513.1| tryptophan-rich sensory-like protein [Micromonas commoda])

HSP 1 Score: 107.457 bits (267), Expect = 1.825e-22
Identity = 58/127 (45.67%), Postives = 78/127 (61.42%), Query Frame = 0
Query:  113 GALGTWILATALQFATIVAFMYGMEKAFLRFNLSKQASIWLVRAFFAFMSLRSRVFSILDNSRPTVAMEDRKRRLRKRPSWMPPAKAFPVIWISIGVLRTIASSLVYETTNTLLSPALLAFVLHLCV 239
            GA+  + L TA+QF+ +V F   +     R  L       LV A+F F +L+SRVFS L+ SRP V  E    + R+RPSWMPP  AFP+IW +I VLR ++S +V+ TT TL +PA  A +LHL V
Sbjct:  166 GAIWRYFLCTAVQFSVMVWFSMWLNVGISRSPLDLTYQKALVGAWFGFNALKSRVFSPLNASRPKVEGEKDAIKERRRPSWMPPPIAFPIIWTTIAVLRAVSSVVVFSTTGTLNNPAHFAMLLHLAV 292          
BLAST of EWM26967.1 vs. NCBI_GenBank
Match: gi|1199292944|gb|OUS48030.1| (tryptophan-rich sensory protein [Ostreococcus tauri])

HSP 1 Score: 103.605 bits (257), Expect = 1.494e-21
Identity = 54/132 (40.91%), Postives = 86/132 (65.15%), Query Frame = 0
Query:  110 MQWGALGTWILATALQFATIVAFMYGMEKAFL-RFNLSKQASIWLVRAFFAF-MSLRSRVFSILDNSRPTVAMEDRKRRLRKRPSWMPPAKAFPVIWISIGVLRTIASSLVYETTNTLLSPALLAFVLHLCV 239
            + +GA+  ++ ATA + + I AF+Y ++ A L + + S   +   + A   F ++LRSRVFS L+ SRP +A E   ++ RKRPSW PPA  FP++WIS+  LR++++ LV+ TT  LL PA+++ V HL +
Sbjct:   95 LDFGAVARYVAATAFEVSAIGAFLYFVQMAGLAKLHASNLGAAKAITAVIFFGLALRSRVFSPLNASRPKIANERLSKKQRKRPSWTPPAVVFPLVWISMAFLRSLSTMLVFTTTGNLLHPAVMSLVAHLSI 226          
BLAST of EWM26967.1 vs. NCBI_GenBank
Match: gi|693499883|emb|CEF97935.1| (TspO/MBR-related protein [Ostreococcus tauri])

HSP 1 Score: 101.679 bits (252), Expect = 2.229e-21
Identity = 54/132 (40.91%), Postives = 86/132 (65.15%), Query Frame = 0
Query:  110 MQWGALGTWILATALQFATIVAFMYGMEKAFL-RFNLSKQASIWLVRAFFAF-MSLRSRVFSILDNSRPTVAMEDRKRRLRKRPSWMPPAKAFPVIWISIGVLRTIASSLVYETTNTLLSPALLAFVLHLCV 239
            + +GA+  ++ ATA + + I AF+Y ++ A L + + S   +   + A   F ++LRSRVFS L+ SRP +A E   ++ RKRPSW PPA  FP++WIS+  LR++++ LV+ TT  LL PA+++ V HL +
Sbjct:   31 LDFGAVARYVAATAFEVSAIGAFLYFVQMAGLAKLHASNLGAAKAITAVIFFGLALRSRVFSPLNASRPKIANERLSKKQRKRPSWTPPAVVFPLVWISMAFLRSLSTMLVFTTTGNLLHPAVMSLVAHLSI 162          
BLAST of EWM26967.1 vs. NCBI_GenBank
Match: gi|308803931|ref|XP_003079278.1| (COG3476: Tryptophan-rich sensory protein (ISS) [Ostreococcus tauri])

HSP 1 Score: 100.908 bits (250), Expect = 1.356e-20
Identity = 53/131 (40.46%), Postives = 80/131 (61.07%), Query Frame = 0
Query:  110 MQWGALGTWILATALQFATIVAFMY-GMEKAFLRFNLSKQASIWLVRAFFAFMSLRSRVFSILDNSRPTVAMEDRKRRLRKRPSWMPPAKAFPVIWISIGVLRTIASSLVYETTNTLLSPALLAFVLHLCV 239
            + +GA+  ++ ATA + + I AF+Y G  KA             +    F  ++LRSRVFS L+ SRP +A E   ++ RKRPSW PPA  FP++WIS+  LR++++ LV+ TT  LL PA+++ V HL +
Sbjct:   95 LDFGAVARYVAATAFEVSAIGAFLYFGAAKA-------------ITAVIFFGLALRSRVFSPLNASRPKIANERLSKKQRKRPSWTPPAVVFPLVWISMAFLRSLSTMLVFTTTGNLLHPAVMSLVAHLSI 212          
BLAST of EWM26967.1 vs. NCBI_GenBank
Match: gi|298707586|emb|CBJ30165.1| (tryptophan-rich sensory-like protein [Ectocarpus siliculosus])

HSP 1 Score: 97.8265 bits (242), Expect = 1.380e-19
Identity = 53/135 (39.26%), Postives = 85/135 (62.96%), Query Frame = 0
Query:  108 PPMQWGALGTWILATALQFATIVAFMYGMEKAFLRFNLSK--QASIWLVRAFFAFMSLRSRVFSILDNSRPTVAMEDRKRRLRKRPSWMPPAKAFPVIWISIGVLRTIASSLVYETT-NTLLSPALLAFVLHLCV 239
            PP+   A+  +I  TA +F  I+  +  M+   L    +K  Q +++L    F F++++SR FS+L+  RP++A E  ++  R+RP WMPP KAFPVIWI+IGVLR +++++V+E     L++  + A VLHL V
Sbjct:   86 PPLDVAAVAKYIAGTAGEFTIIMGLLALMQGKLLPRLPAKWAQRTVFLT---FGFLAMKSRTFSLLNARRPSLAKEKEEKIERRRPDWMPPIKAFPVIWITIGVLRALSTAMVWEALGGNLVATPIAAMVLHLSV 217          
BLAST of EWM26967.1 vs. NCBI_GenBank
Match: gi|145347019|ref|XP_001417977.1| (predicted protein, partial [Ostreococcus lucimarinus CCE9901] >gi|144578205|gb|ABO96270.1| predicted protein, partial [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 87.8113 bits (216), Expect = 4.829e-17
Identity = 40/87 (45.98%), Postives = 58/87 (66.67%), Query Frame = 0
Query:  153 LVRAFFAFMSLRSRVFSILDNSRPTVAMEDRKRRLRKRPSWMPPAKAFPVIWISIGVLRTIASSLVYETTNTLLSPALLAFVLHLCV 239
            +V   F  ++ RSRVFS L+ SRP +A E   ++ +KRPSW PPA  FP++WIS+G LR +++ LV+  T  +  PA+LA V HL +
Sbjct:    1 IVAVMFFMLAFRSRVFSPLNASRPKIANERLAKKQKKRPSWTPPAIVFPLVWISMGFLRALSTMLVFAQTGVVTHPAILALVAHLSI 87          
BLAST of EWM26967.1 vs. NCBI_GenBank
Match: gi|612387657|ref|XP_007509349.1| (predicted protein [Bathycoccus prasinos] >gi|412990488|emb|CCO19806.1| predicted protein [Bathycoccus prasinos])

HSP 1 Score: 91.2781 bits (225), Expect = 6.032e-17
Identity = 43/82 (52.44%), Postives = 52/82 (63.41%), Query Frame = 0
Query:  164 RSRVFSILDNSRPTVAMEDRKRRLRKRPSWMPPAKAFPVIWISIGVLRTIASSLVYETTNTLLSPALLAFVLHLCVRSWGVF 245
            RSR FSILD SRP +  E + +  RKRP W PPAK FPV+WISI  LR+I+S LVYE    L    ++  VLHL +  W  F
Sbjct:  188 RSRTFSILDASRPKLITEIKMKEQRKRPEWTPPAKVFPVVWISIAFLRSISSILVYEQVGKLFCFPIMCLVLHLSIGDWWNF 269          
BLAST of EWM26967.1 vs. NCBI_GenBank
Match: gi|1115283954|gb|OKH47101.1| (TspO protein [Phormidium tenue NIES-30])

HSP 1 Score: 89.3521 bits (220), Expect = 6.377e-17
Identity = 52/122 (42.62%), Postives = 75/122 (61.48%), Query Frame = 0
Query:  121 ATALQFATIVAFMYGMEKAFLRFNLSKQASIWLVR----AFFAFMSLRSRVFSILDNSRPTVAMEDRKRRLRKRPSWMPPAKAFPVIWISIGVLRTIASSLVYETT-NTLLSPALLAFVLHL 237
            AT  Q A +   ++ M+ AF  FNL   A +W+      AFFAF++LRSR+FS+LDN+R +     R + L +RP W PP  AFP++W+SI VLR +++ LV+     T LS  L+ +V HL
Sbjct:   49 ATIAQIAAMTGLLWAMDVAFQYFNLGALA-LWVTTSIACAFFAFVTLRSRLFSLLDNTRNS----GRYKSL-QRPGWAPPPLAFPIVWMSIAVLRVVSAYLVWSAMGQTFLSWPLILYVAHL 164          
BLAST of EWM26967.1 vs. NCBI_GenBank
Match: gi|1180688045|ref|WP_084173225.1| (TspO protein [Phormidium tenue])

HSP 1 Score: 89.3521 bits (220), Expect = 7.499e-17
Identity = 50/122 (40.98%), Postives = 73/122 (59.84%), Query Frame = 0
Query:  121 ATALQFATIVAFMYGMEKAFLRFNLSKQASIWLVR----AFFAFMSLRSRVFSILDNSRPTVAMEDRKRRLRKRPSWMPPAKAFPVIWISIGVLRTIASSLVYETT-NTLLSPALLAFVLHL 237
            AT  Q A +   ++ M+ AF  FNL   A +W+      AFFAF++LRSR+FS+LDN+R        + +  +RP W PP  AFP++W+SI VLR +++ LV+     T LS  L+ +V HL
Sbjct:   46 ATIAQIAAMTGLLWAMDVAFQYFNLGALA-LWVTTSIACAFFAFVTLRSRLFSLLDNTR-----NSGRYKSLQRPGWAPPPLAFPIVWMSIAVLRVVSAYLVWSAMGQTFLSWPLILYVAHL 161          
The following BLAST results are available for this feature:
BLAST of EWM26967.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109129|gb|EWM26967.1|0.000e+0100.00tryptophan-rich sensory-like protein [Nannochlorop... [more]
gi|255077215|ref|XP_002502255.1|1.825e-2245.67tryptophan-rich sensory-like protein [Micromonas c... [more]
gi|1199292944|gb|OUS48030.1|1.494e-2140.91tryptophan-rich sensory protein [Ostreococcus taur... [more]
gi|693499883|emb|CEF97935.1|2.229e-2140.91TspO/MBR-related protein [Ostreococcus tauri][more]
gi|308803931|ref|XP_003079278.1|1.356e-2040.46COG3476: Tryptophan-rich sensory protein (ISS) [Os... [more]
gi|298707586|emb|CBJ30165.1|1.380e-1939.26tryptophan-rich sensory-like protein [Ectocarpus s... [more]
gi|145347019|ref|XP_001417977.1|4.829e-1745.98predicted protein, partial [Ostreococcus lucimarin... [more]
gi|612387657|ref|XP_007509349.1|6.032e-1752.44predicted protein [Bathycoccus prasinos] >gi|41299... [more]
gi|1115283954|gb|OKH47101.1|6.377e-1742.62TspO protein [Phormidium tenue NIES-30][more]
gi|1180688045|ref|WP_084173225.1|7.499e-1740.98TspO protein [Phormidium tenue][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3716rna3716Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications