EWM26970.1, cds3704 (CDS) Nannochloropsis gaditana

Overview
NameEWM26970.1
Unique Namecds3704
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:1034524..1035133 +
Alignment locationCM002461.1:1035291..1035418 +

Link to JBrowse

Properties
Property NameValue
End range.
End range1035418
Protein idEWM26970.1
Producttbc domain-containing protein kinase-like isoform 3
Partialtrue
Orig transcript idgnl|cribi|Naga_101386g1.2450.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1034524..1035133 +
CM002461.1supercontigCM002461.1:1035291..1035418 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
Vocabulary: INTERPRO
TermDefinition
IPR000195Rab-GTPase-TBC_dom
Homology
BLAST of EWM26970.1 vs. NCBI_GenBank
Match: gi|585109134|gb|EWM26970.1| (tbc domain-containing protein kinase-like isoform 3, partial [Nannochloropsis gaditana])

HSP 1 Score: 496.893 bits (1278), Expect = 1.149e-177
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0
Query:    1 MLSAQLRAEINKTDMDVPKIKQFCRNHPVGTIVDNKMRVKVWLALLLDGEPPPPLPSLPPTALLVEEDARVVDADVKRTRGYLPIFQLPDTQDTVRKLLKTYCLATGVKYKQGMHELLAPFVALSPDPPSPPLPVEAIYAMFFRFLSRYLRPFFWDAGTRALQAGFARFELLLLYHDPELGTHLRRHDFPPALYLTPMLVTLFAHNLEMYLVHRLWDSYLSVDDPAFVYFVALALFASKRYLLLPS 246
            MLSAQLRAEINKTDMDVPKIKQFCRNHPVGTIVDNKMRVKVWLALLLDGEPPPPLPSLPPTALLVEEDARVVDADVKRTRGYLPIFQLPDTQDTVRKLLKTYCLATGVKYKQGMHELLAPFVALSPDPPSPPLPVEAIYAMFFRFLSRYLRPFFWDAGTRALQAGFARFELLLLYHDPELGTHLRRHDFPPALYLTPMLVTLFAHNLEMYLVHRLWDSYLSVDDPAFVYFVALALFASKRYLLLPS
Sbjct:    1 MLSAQLRAEINKTDMDVPKIKQFCRNHPVGTIVDNKMRVKVWLALLLDGEPPPPLPSLPPTALLVEEDARVVDADVKRTRGYLPIFQLPDTQDTVRKLLKTYCLATGVKYKQGMHELLAPFVALSPDPPSPPLPVEAIYAMFFRFLSRYLRPFFWDAGTRALQAGFARFELLLLYHDPELGTHLRRHDFPPALYLTPMLVTLFAHNLEMYLVHRLWDSYLSVDDPAFVYFVALALFASKRYLLLPS 246          
BLAST of EWM26970.1 vs. NCBI_GenBank
Match: gi|301121498|ref|XP_002908476.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262103507|gb|EEY61559.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 153.295 bits (386), Expect = 1.018e-38
Identity = 101/247 (40.89%), Postives = 137/247 (55.47%), Query Frame = 0
Query:    1 MLSAQLRAEINKTDMDVPKIKQFCRNHPVGTIVDNKMRVKVWLALLLDGEPPPPLPSLPPTALLVEED---ARVVDADVKRTRGYLPIFQLPDTQDTVRKLLKTYCLATGVKYKQGMHELLAPFVALSPD----PPSPPLPVEAIYAMFFRFLSRYLRPFFWDAGTRALQAGFARFELLLLYHDPELGTHLRRHDFPPALYLTPMLVTLFAHNLEMYLVHRLWDSYLSVDDPAFVYFVALALFASKR 240
            +L+ QL  E+ K   D   I   CR+  +G +  N +R +VW  LL  G      P+L  +   VEED    RVV AD  RTRG  P FQ P+T + V KLL  YC    ++YKQGM+E+LAPF+ L+      P   PL   A++  F+  + + L   F D   R+LQ  F  + LL+LYHDP L  +L +HD  P LY+TP  +TLFA +L    V  LWD +L  +DP  ++FVA AL A+ R
Sbjct:   61 LLTLQLDREMQKRRPDHFVIGVTCRS--LGGVPSN-LRSQVWQELL--GVARTDRPNLDQSIRQVEEDLDNQRVVAADAARTRGNEPRFQQPETVELVVKLLTYYCKRRSIQYKQGMNEVLAPFLLLTEQRDGAPERTPLAEGAVFQCFYALIDKLLPHVFVDKEFRSLQCSFQLYRLLMLYHDPALCHYLDQHDMTPELYVTPWFMTLFARSLPPEFVFYLWDFFLLEEDPYLLHFVAYALVAANR 302          
BLAST of EWM26970.1 vs. NCBI_GenBank
Match: gi|566033274|gb|ETI56185.1| (hypothetical protein F443_01226 [Phytophthora parasitica P1569])

HSP 1 Score: 152.14 bits (383), Expect = 2.156e-38
Identity = 99/243 (40.74%), Postives = 134/243 (55.14%), Query Frame = 0
Query:    5 QLRAEINKTDMDVPKIKQFCRNHPVGTIVDNKMRVKVWLALLLDGEPPPPLPSLPPTALLVEED---ARVVDADVKRTRGYLPIFQLPDTQDTVRKLLKTYCLATGVKYKQGMHELLAPFVALSPDPPSP----PLPVEAIYAMFFRFLSRYLRPFFWDAGTRALQAGFARFELLLLYHDPELGTHLRRHDFPPALYLTPMLVTLFAHNLEMYLVHRLWDSYLSVDDPAFVYFVALALFASKR 240
            QL  E+ K   D   I   CR+  +G +  N +R +VW  LL  G       SL  + L VEED    RV+ AD  RTRG  P F+ P+T + V KLL  YC    ++YKQGM+E+LAPF+ L+          PL    ++  F+  + R+L   F D   R+LQ  F  + LL+LYHDPEL  +L +HD  P LY+TP  +TLFA +L    V  LWD +L  +DP  ++FVA AL A+ R
Sbjct:   68 QLEREMQKRRPDHFVIGVTCRS--LGGVPSN-LRSQVWQELL--GVARTERLSLDQSILQVEEDLDNQRVIAADAARTRGNEPRFKQPETVELVVKLLTYYCKCCSIQYKQGMNEVLAPFLLLTEQRDGAQKRVPLAEGVVFQCFYALIDRFLPHVFVDKEFRSLQCSFQLYRLLMLYHDPELCHYLDQHDMTPELYVTPWFMTLFARSLPPEFVFYLWDFFLLEEDPYLLHFVAYALVAANR 305          
BLAST of EWM26970.1 vs. NCBI_GenBank
Match: gi|568059083|gb|ETM55667.1| (hypothetical protein L914_01145 [Phytophthora parasitica])

HSP 1 Score: 152.14 bits (383), Expect = 2.284e-38
Identity = 99/243 (40.74%), Postives = 134/243 (55.14%), Query Frame = 0
Query:    5 QLRAEINKTDMDVPKIKQFCRNHPVGTIVDNKMRVKVWLALLLDGEPPPPLPSLPPTALLVEED---ARVVDADVKRTRGYLPIFQLPDTQDTVRKLLKTYCLATGVKYKQGMHELLAPFVALSPDPPSP----PLPVEAIYAMFFRFLSRYLRPFFWDAGTRALQAGFARFELLLLYHDPELGTHLRRHDFPPALYLTPMLVTLFAHNLEMYLVHRLWDSYLSVDDPAFVYFVALALFASKR 240
            QL  E+ K   D   I   CR+  +G +  N +R +VW  LL  G       SL  + L VEED    RV+ AD  RTRG  P F+ P+T + V KLL  YC    ++YKQGM+E+LAPF+ L+          PL    ++  F+  + R+L   F D   R+LQ  F  + LL+LYHDPEL  +L +HD  P LY+TP  +TLFA +L    V  LWD +L  +DP  ++FVA AL A+ R
Sbjct:   68 QLEREMQKRRPDHFVIGVTCRS--LGGVPSN-LRSQVWQELL--GVARTERLSLDQSILQVEEDLDNQRVIAADAARTRGNEPRFKQPETVELVVKLLTYYCKCCSIQYKQGMNEVLAPFLLLTEQRDGAQKRVPLAEGVVFQCFYALIDRFLPHVFVDKEFRSLQCSFQLYRLLMLYHDPELCHYLDQHDMTPELYVTPWFMTLFARSLPPEFVFYLWDFFLLEEDPYLLHFVAYALVAANR 305          
BLAST of EWM26970.1 vs. NCBI_GenBank
Match: gi|970643416|gb|KUF84680.1| (TBC1 domain family member 23 [Phytophthora nicotianae])

HSP 1 Score: 152.14 bits (383), Expect = 2.566e-38
Identity = 99/243 (40.74%), Postives = 134/243 (55.14%), Query Frame = 0
Query:    5 QLRAEINKTDMDVPKIKQFCRNHPVGTIVDNKMRVKVWLALLLDGEPPPPLPSLPPTALLVEED---ARVVDADVKRTRGYLPIFQLPDTQDTVRKLLKTYCLATGVKYKQGMHELLAPFVALSPDPPSP----PLPVEAIYAMFFRFLSRYLRPFFWDAGTRALQAGFARFELLLLYHDPELGTHLRRHDFPPALYLTPMLVTLFAHNLEMYLVHRLWDSYLSVDDPAFVYFVALALFASKR 240
            QL  E+ K   D   I   CR+  +G +  N +R +VW  LL  G       SL  + L VEED    RV+ AD  RTRG  P F+ P+T + V KLL  YC    ++YKQGM+E+LAPF+ L+          PL    ++  F+  + R+L   F D   R+LQ  F  + LL+LYHDPEL  +L +HD  P LY+TP  +TLFA +L    V  LWD +L  +DP  ++FVA AL A+ R
Sbjct:   68 QLEREMQKRRPDHFVIGVTCRS--LGGVPSN-LRSQVWQELL--GVARTERLSLDQSILQVEEDLDNQRVIAADAARTRGNEPRFKQPETVELVVKLLTYYCKCRSIQYKQGMNEVLAPFLLLTEQRDGAQKRVPLAEGVVFQCFYALIDRFLPHVFVDKEFRSLQCSFQLYRLLMLYHDPELCHYLDQHDMTPELYVTPWFMTLFARSLPPEFVFYLWDFFLLEEDPYLLHFVAYALVAANR 305          
BLAST of EWM26970.1 vs. NCBI_GenBank
Match: gi|570934446|gb|ETO99702.1| (hypothetical protein F441_22882 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 151.754 bits (382), Expect = 3.229e-38
Identity = 99/243 (40.74%), Postives = 134/243 (55.14%), Query Frame = 0
Query:    5 QLRAEINKTDMDVPKIKQFCRNHPVGTIVDNKMRVKVWLALLLDGEPPPPLPSLPPTALLVEED---ARVVDADVKRTRGYLPIFQLPDTQDTVRKLLKTYCLATGVKYKQGMHELLAPFVALSPDPPSP----PLPVEAIYAMFFRFLSRYLRPFFWDAGTRALQAGFARFELLLLYHDPELGTHLRRHDFPPALYLTPMLVTLFAHNLEMYLVHRLWDSYLSVDDPAFVYFVALALFASKR 240
            QL  E+ K   D   I   CR+  +G +  N +R +VW  LL  G       SL  + L VEED    RV+ AD  RTRG  P F+ P+T + V KLL  YC    ++YKQGM+E+LAPF+ L+          PL    ++  F+  + R+L   F D   R+LQ  F  + LL+LYHDPEL  +L +HD  P LY+TP  +TLFA +L    V  LWD +L  +DP  ++FVA AL A+ R
Sbjct:   68 QLEREMQKRRPDHFVIGVTCRS--LGGVPSN-LRSQVWQELL--GVARTERLSLDQSILQVEEDLDNQRVIAADAARTRGNEPRFKQPETVELVVKLLTYYCKCRSIQYKQGMNEVLAPFLLLTEQRDGAQKRVPLAEGVVFQCFYALIDRFLPHVFVDKEFRSLQCSFQLYRLLMLYHDPELCHYLDQHDMTPELYVTPWFMTLFARSLPPEFVFYLWDFFLLEEDPYLLHFVAYALVAANR 305          
BLAST of EWM26970.1 vs. NCBI_GenBank
Match: gi|568028482|gb|ETM02423.1| (hypothetical protein L917_01106 [Phytophthora parasitica])

HSP 1 Score: 151.754 bits (382), Expect = 3.292e-38
Identity = 99/243 (40.74%), Postives = 134/243 (55.14%), Query Frame = 0
Query:    5 QLRAEINKTDMDVPKIKQFCRNHPVGTIVDNKMRVKVWLALLLDGEPPPPLPSLPPTALLVEED---ARVVDADVKRTRGYLPIFQLPDTQDTVRKLLKTYCLATGVKYKQGMHELLAPFVALSPDPPSP----PLPVEAIYAMFFRFLSRYLRPFFWDAGTRALQAGFARFELLLLYHDPELGTHLRRHDFPPALYLTPMLVTLFAHNLEMYLVHRLWDSYLSVDDPAFVYFVALALFASKR 240
            QL  E+ K   D   I   CR+  +G +  N +R +VW  LL  G       SL  + L VEED    RV+ AD  RTRG  P F+ P+T + V KLL  YC    ++YKQGM+E+LAPF+ L+          PL    ++  F+  + R+L   F D   R+LQ  F  + LL+LYHDPEL  +L +HD  P LY+TP  +TLFA +L    V  LWD +L  +DP  ++FVA AL A+ R
Sbjct:   68 QLEREMQKRRPDHFVIGVTCRS--LGGVPSN-LRSQVWQELL--GVARTERLSLDQSILQVEEDLDNQRVIAADAARTRGNEPRFKQPETVELVVKLLTYYCKCRSIQYKQGMNEVLAPFLLLTEQRDGAQKRVPLAEGVVFQCFYALIDRFLPHVFVDKEFRSLQCSFQLYRLLMLYHDPELCHYLDQHDMTPELYVTPWFMTLFARSLPPEFVFYLWDFFLLEEDPYLLHFVAYALVAANR 305          
BLAST of EWM26970.1 vs. NCBI_GenBank
Match: gi|567999321|gb|ETL49362.1| (hypothetical protein L916_01136 [Phytophthora parasitica])

HSP 1 Score: 151.754 bits (382), Expect = 3.389e-38
Identity = 99/243 (40.74%), Postives = 134/243 (55.14%), Query Frame = 0
Query:    5 QLRAEINKTDMDVPKIKQFCRNHPVGTIVDNKMRVKVWLALLLDGEPPPPLPSLPPTALLVEED---ARVVDADVKRTRGYLPIFQLPDTQDTVRKLLKTYCLATGVKYKQGMHELLAPFVALSPDPPSP----PLPVEAIYAMFFRFLSRYLRPFFWDAGTRALQAGFARFELLLLYHDPELGTHLRRHDFPPALYLTPMLVTLFAHNLEMYLVHRLWDSYLSVDDPAFVYFVALALFASKR 240
            QL  E+ K   D   I   CR+  +G +  N +R +VW  LL  G       SL  + L VEED    RV+ AD  RTRG  P F+ P+T + V KLL  YC    ++YKQGM+E+LAPF+ L+          PL    ++  F+  + R+L   F D   R+LQ  F  + LL+LYHDPEL  +L +HD  P LY+TP  +TLFA +L    V  LWD +L  +DP  ++FVA AL A+ R
Sbjct:   68 QLEREMQKRRPDHFVIGVTCRS--LGGVPSN-LRSQVWQELL--GVARTERLSLDQSILQVEEDLDNQRVIAADAARTRGNEPRFKQPETVELVVKLLTYYCKCRSIQYKQGMNEVLAPFLLLTEQRDGAQKRVPLAEGVVFQCFYALIDRFLPHVFVDKEFRSLQCSFQLYRLLMLYHDPELCHYLDQHDMTPELYVTPWFMTLFARSLPPEFVFYLWDFFLLEEDPYLLHFVAYALVAANR 305          
BLAST of EWM26970.1 vs. NCBI_GenBank
Match: gi|570336975|gb|ETO84923.1| (hypothetical protein F444_01225 [Phytophthora parasitica P1976])

HSP 1 Score: 151.754 bits (382), Expect = 3.421e-38
Identity = 99/243 (40.74%), Postives = 134/243 (55.14%), Query Frame = 0
Query:    5 QLRAEINKTDMDVPKIKQFCRNHPVGTIVDNKMRVKVWLALLLDGEPPPPLPSLPPTALLVEED---ARVVDADVKRTRGYLPIFQLPDTQDTVRKLLKTYCLATGVKYKQGMHELLAPFVALSPDPPSP----PLPVEAIYAMFFRFLSRYLRPFFWDAGTRALQAGFARFELLLLYHDPELGTHLRRHDFPPALYLTPMLVTLFAHNLEMYLVHRLWDSYLSVDDPAFVYFVALALFASKR 240
            QL  E+ K   D   I   CR+  +G +  N +R +VW  LL  G       SL  + L VEED    RV+ AD  RTRG  P F+ P+T + V KLL  YC    ++YKQGM+E+LAPF+ L+          PL    ++  F+  + R+L   F D   R+LQ  F  + LL+LYHDPEL  +L +HD  P LY+TP  +TLFA +L    V  LWD +L  +DP  ++FVA AL A+ R
Sbjct:   68 QLEREMQKRRPDHFVIGVTCRS--LGGVPSN-LRSQVWQELL--GVARTERLSLDQSILQVEEDLDNQRVIAADAARTRGNEPRFKQPETVELVVKLLTYYCKCRSIQYKQGMNEVLAPFLLLTEQRDGAQKRVPLAEGVVFQCFYALIDRFLPHVFVDKEFRSLQCSFQLYRLLMLYHDPELCHYLDQHDMTPELYVTPWFMTLFARSLPPEFVFYLWDFFLLEEDPYLLHFVAYALVAANR 305          
BLAST of EWM26970.1 vs. NCBI_GenBank
Match: gi|570997672|gb|ETP54000.1| (hypothetical protein F442_01160 [Phytophthora parasitica P10297])

HSP 1 Score: 151.754 bits (382), Expect = 3.454e-38
Identity = 99/243 (40.74%), Postives = 134/243 (55.14%), Query Frame = 0
Query:    5 QLRAEINKTDMDVPKIKQFCRNHPVGTIVDNKMRVKVWLALLLDGEPPPPLPSLPPTALLVEED---ARVVDADVKRTRGYLPIFQLPDTQDTVRKLLKTYCLATGVKYKQGMHELLAPFVALSPDPPSP----PLPVEAIYAMFFRFLSRYLRPFFWDAGTRALQAGFARFELLLLYHDPELGTHLRRHDFPPALYLTPMLVTLFAHNLEMYLVHRLWDSYLSVDDPAFVYFVALALFASKR 240
            QL  E+ K   D   I   CR+  +G +  N +R +VW  LL  G       SL  + L VEED    RV+ AD  RTRG  P F+ P+T + V KLL  YC    ++YKQGM+E+LAPF+ L+          PL    ++  F+  + R+L   F D   R+LQ  F  + LL+LYHDPEL  +L +HD  P LY+TP  +TLFA +L    V  LWD +L  +DP  ++FVA AL A+ R
Sbjct:   68 QLEREMQKRRPDHFVIGVTCRS--LGGVPSN-LRSQVWQELL--GVARTERLSLDQSILQVEEDLDNQRVIAADAARTRGNEPRFKQPETVELVVKLLTYYCKCRSIQYKQGMNEVLAPFLLLTEQRDGAQKRVPLAEGVVFQCFYALIDRFLPHVFVDKEFRSLQCSFQLYRLLMLYHDPELCHYLDQHDMTPELYVTPWFMTLFARSLPPEFVFYLWDFFLLEEDPYLLHFVAYALVAANR 305          
The following BLAST results are available for this feature:
BLAST of EWM26970.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109134|gb|EWM26970.1|1.149e-177100.00tbc domain-containing protein kinase-like isoform ... [more]
gi|301121498|ref|XP_002908476.1|1.018e-3840.89conserved hypothetical protein [Phytophthora infes... [more]
gi|566033274|gb|ETI56185.1|2.156e-3840.74hypothetical protein F443_01226 [Phytophthora para... [more]
gi|568059083|gb|ETM55667.1|2.284e-3840.74hypothetical protein L914_01145 [Phytophthora para... [more]
gi|970643416|gb|KUF84680.1|2.566e-3840.74TBC1 domain family member 23 [Phytophthora nicotia... [more]
gi|570934446|gb|ETO99702.1|3.229e-3840.74hypothetical protein F441_22882 [Phytophthora para... [more]
gi|568028482|gb|ETM02423.1|3.292e-3840.74hypothetical protein L917_01106 [Phytophthora para... [more]
gi|567999321|gb|ETL49362.1|3.389e-3840.74hypothetical protein L916_01136 [Phytophthora para... [more]
gi|570336975|gb|ETO84923.1|3.421e-3840.74hypothetical protein F444_01225 [Phytophthora para... [more]
gi|570997672|gb|ETP54000.1|3.454e-3840.74hypothetical protein F442_01160 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3713rna3713Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications