EWM26974.1, cds3694 (CDS) Nannochloropsis gaditana

Overview
NameEWM26974.1
Unique Namecds3694
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:1014164..1015592 +
Alignment locationCM002461.1:1015701..1015924 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26974.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100127g14.6206.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1014164..1015592 +
CM002461.1supercontigCM002461.1:1015701..1015924 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM26974.1 vs. NCBI_GenBank
Match: gi|585109141|gb|EWM26974.1| (hypothetical protein Naga_100127g14 [Nannochloropsis gaditana])

HSP 1 Score: 1123.61 bits (2905), Expect = 0.000e+0
Identity = 550/550 (100.00%), Postives = 550/550 (100.00%), Query Frame = 0
Query:    1 MCTNELMTGFVEAPTAMCSGSHFSAKAPVGGNELKDLQCDAQSMCKPCFLTRDASVNTAASITDDDEDEDDEGCACTLERGGASMTRSLLEDDAATLFGLGGCLDLLANSKHRLGARLTSRTGCEVVEKDSTTLPAWAPLPAPPPQLWRQRSAQEIRKHYAVKLGIRTMGTGHLVAGLKASQWRTSCLPEGVRPVIEKLKGQPESYGGFLRLMRRQTLVGKGQQAPTEGSAPTAYPTSHESRSSLSSTDDRAPACAACLALPSDRAPKQRALPVPVPGRASVDGAIQLRPAMDYVGGSGGDDESDGCGSFSSSEASGYLSCSSCSRTSPSFPLPAFQYPLGTGAPHNIRDGRRVGGLKREPKLAVPQVSHSAGESGTGKALPSPSSLPPSSFPSPSTSSFAMRCLMDAANSPAASTSVGAMSLTPASCSFLSRASSPPHAHTDRQASRLAVSPAPLSRRRIAFHEDVCVVHIPSHTEYSRRIKSQYWTSPAEIYEMACRNLVEFEAEGYSWEAALEEEHLYWCPDTASFVHPAHIMMEGQEDWREGRREG 550
            MCTNELMTGFVEAPTAMCSGSHFSAKAPVGGNELKDLQCDAQSMCKPCFLTRDASVNTAASITDDDEDEDDEGCACTLERGGASMTRSLLEDDAATLFGLGGCLDLLANSKHRLGARLTSRTGCEVVEKDSTTLPAWAPLPAPPPQLWRQRSAQEIRKHYAVKLGIRTMGTGHLVAGLKASQWRTSCLPEGVRPVIEKLKGQPESYGGFLRLMRRQTLVGKGQQAPTEGSAPTAYPTSHESRSSLSSTDDRAPACAACLALPSDRAPKQRALPVPVPGRASVDGAIQLRPAMDYVGGSGGDDESDGCGSFSSSEASGYLSCSSCSRTSPSFPLPAFQYPLGTGAPHNIRDGRRVGGLKREPKLAVPQVSHSAGESGTGKALPSPSSLPPSSFPSPSTSSFAMRCLMDAANSPAASTSVGAMSLTPASCSFLSRASSPPHAHTDRQASRLAVSPAPLSRRRIAFHEDVCVVHIPSHTEYSRRIKSQYWTSPAEIYEMACRNLVEFEAEGYSWEAALEEEHLYWCPDTASFVHPAHIMMEGQEDWREGRREG
Sbjct:    1 MCTNELMTGFVEAPTAMCSGSHFSAKAPVGGNELKDLQCDAQSMCKPCFLTRDASVNTAASITDDDEDEDDEGCACTLERGGASMTRSLLEDDAATLFGLGGCLDLLANSKHRLGARLTSRTGCEVVEKDSTTLPAWAPLPAPPPQLWRQRSAQEIRKHYAVKLGIRTMGTGHLVAGLKASQWRTSCLPEGVRPVIEKLKGQPESYGGFLRLMRRQTLVGKGQQAPTEGSAPTAYPTSHESRSSLSSTDDRAPACAACLALPSDRAPKQRALPVPVPGRASVDGAIQLRPAMDYVGGSGGDDESDGCGSFSSSEASGYLSCSSCSRTSPSFPLPAFQYPLGTGAPHNIRDGRRVGGLKREPKLAVPQVSHSAGESGTGKALPSPSSLPPSSFPSPSTSSFAMRCLMDAANSPAASTSVGAMSLTPASCSFLSRASSPPHAHTDRQASRLAVSPAPLSRRRIAFHEDVCVVHIPSHTEYSRRIKSQYWTSPAEIYEMACRNLVEFEAEGYSWEAALEEEHLYWCPDTASFVHPAHIMMEGQEDWREGRREG 550          
BLAST of EWM26974.1 vs. NCBI_GenBank
Match: gi|299470113|emb|CBN78142.1| (hypothetical protein Esi_0100_0046 [Ectocarpus siliculosus])

HSP 1 Score: 96.6709 bits (239), Expect = 1.753e-17
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 0
Query:  454 APLSRRRIAFHEDVCVVHIPSHTEYSRRIKSQYWTSPAEIYEMACRNLVEFEAEGYSWEAALEEEHLYWCPDTASFVHPAHIMMEGQEDWRE 545
            AP   + + F   V  V++P H+EYS R++  YW S  EI EM  RN++EF+AE Y+WE   EEE +Y+C +T  F+HP  I  + QE+ RE
Sbjct:  471 APCRHKHVDFAPVVSAVYVPVHSEYSDRVRRSYWNSAGEIREMVYRNMIEFDAEEYNWENVAEEEDMYFCEETGEFIHP--IFFDSQEEARE 560          
BLAST of EWM26974.1 vs. NCBI_GenBank
Match: gi|224000513|ref|XP_002289929.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975137|gb|EED93466.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 85.8853 bits (211), Expect = 1.229e-14
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 0
Query:  458 RRRIAFHEDVCVVHIPSHTEYSRRIKSQYWTSPAEIYEMACRNLVEFEAEGYSWEAALEEE-HLYWCPDTASFVHPAHIMM-----EGQEDWR 544
            RRR+ F +DV VV IP  +EYS RIK + +++  E+ E A RN+VEFEAEG+     L++E   Y CP T   +HP H+       EG +D R
Sbjct:  250 RRRLVFSDDVVVVPIPMRSEYSNRIKERMYSNRVELSENAQRNVVEFEAEGWDASTVLDDEGQFYKCPLTGELIHPVHLAYFKGAGEGGDDQR 342          
BLAST of EWM26974.1 vs. NCBI_GenBank
Match: gi|1210519255|dbj|GAX21839.1| (hypothetical protein FisN_30Hh039 [Fistulifera solaris])

HSP 1 Score: 79.337 bits (194), Expect = 9.565e-14
Identity = 33/83 (39.76%), Postives = 52/83 (62.65%), Query Frame = 0
Query:  452 SPAPLSRRRIAFHEDVCVVHIPSHTEYSRRIKSQYWTSPAEIYEMACRNLVEFEAEGYSWEAALEEEHLYWCPDTASFVHPAH 534
            SP    R  + F+E V V+ IP   EYSR+++S+ W++  E+ + A RN+VEF AEG++W   +E+E +Y C  +   +HP H
Sbjct:   64 SPKRRKRHSLQFNESVTVMAIPMRNEYSRQVRSKLWSNRLELQQNAARNVVEFAAEGWNWRTVVEDERMYVCAFSGQRIHPCH 146          
BLAST of EWM26974.1 vs. NCBI_GenBank
Match: gi|1210521389|dbj|GAX19846.1| (hypothetical protein FisN_11Lh280 [Fistulifera solaris])

HSP 1 Score: 79.7221 bits (195), Expect = 1.468e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 0
Query:  459 RRIAFHEDVCVVHIPSHTEYSRRIKSQYWTSPAEIYEMACRNLVEFEAEGYSWEAALEEEHLYWCPDTASFVHPAHIMMEGQED 542
            R+IAF ++V VV IP+  EYS RIKS+ W++  E+ E A RN +EF AEG+ W    E++ ++ C  +   VHP H+    QE+
Sbjct:  101 RKIAFQDEVDVVPIPTRYEYSDRIKSRIWSNRHELQENAERNALEFAAEGWDWRTVTEDDGMFICSVSGELVHPIHLQHLVQEE 184          
BLAST of EWM26974.1 vs. NCBI_GenBank
Match: gi|1210526556|dbj|GAX14737.1| (hypothetical protein FisN_11Hh280 [Fistulifera solaris])

HSP 1 Score: 79.7221 bits (195), Expect = 1.558e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 0
Query:  459 RRIAFHEDVCVVHIPSHTEYSRRIKSQYWTSPAEIYEMACRNLVEFEAEGYSWEAALEEEHLYWCPDTASFVHPAHIMMEGQED 542
            R+IAF ++V VV IP+  EYS RIKS+ W++  E+ E A RN +EF AEG+ W    E++ ++ C  +   VHP H+    QE+
Sbjct:  102 RKIAFQDEVDVVPIPTRYEYSDRIKSRIWSNRHELQENAERNALEFAAEGWDWRTVTEDDGMFICSVSGELVHPIHLQHLVQEE 185          
BLAST of EWM26974.1 vs. NCBI_GenBank
Match: gi|219117293|ref|XP_002179441.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409332|gb|EEC49264.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 77.0258 bits (188), Expect = 1.443e-12
Identity = 39/101 (38.61%), Postives = 58/101 (57.43%), Query Frame = 0
Query:  435 SSPPHAHTDRQASRLAVSPAPLSRRRIAFHEDVCVVHIPSHTEYSRRIKSQYWTSPAEIYEMACRNLVEFEAEGYSWEAALEEEHLYWCPDTASFVHPAHI 535
            S  P AHT R++            ++I F ++V V+ IP+  EYS RIKS+ W++  E+ E A RN +EF AEG++W    E+E +Y C  +   VHP H+
Sbjct:   85 SDSPMAHTRRKS------------QKIVFVDEVEVLPIPTRYEYSDRIKSRIWSNRYELQENAERNALEFAAEGWNWRNVTEDEGMYICSVSGELVHPIHL 173          
BLAST of EWM26974.1 vs. NCBI_GenBank
Match: gi|224002759|ref|XP_002291051.1| (hypothetical protein THAPSDRAFT_269066 [Thalassiosira pseudonana CCMP1335] >gi|220972827|gb|EED91158.1| hypothetical protein THAPSDRAFT_269066 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 77.7962 bits (190), Expect = 4.797e-12
Identity = 30/79 (37.97%), Postives = 51/79 (64.56%), Query Frame = 0
Query:  457 SRRRIAFHEDVCVVHIPSHTEYSRRIKSQYWTSPAEIYEMACRNLVEFEAEGYSWEAALEEEHLYWCPDTASFVHPAHI 535
            S+RR++ H DV V+ IP+ TEY   ++ + W+S  E+Y+ A RN +EF +EG++W    ++EH+   P +   +HP H+
Sbjct:  205 SKRRVSLHSDVAVLPIPARTEYPILVRQRLWSSATELYQNAARNSLEFASEGWNWRTVTDDEHMILAP-SGERIHPVHL 282          
BLAST of EWM26974.1 vs. NCBI_GenBank
Match: gi|397623827|gb|EJK67162.1| (hypothetical protein THAOC_11846 [Thalassiosira oceanica])

HSP 1 Score: 76.6406 bits (187), Expect = 1.538e-11
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 0
Query:  458 RRRIAFHEDVCVVHIPSHTEYSRRIKSQYWTSPAEIYEMACRNLVEFEAEGYSWEAALEEEH-LYWCPDTASFVHPAHI 535
            RRR+   ++V VV IP  +EYS RIK + ++   E+ E A RN+VEFEAEG+     L++E+  Y CP T   +HP H+
Sbjct:  241 RRRLNISDEVQVVPIPMRSEYSSRIKERMYSGRVELSENAQRNVVEFEAEGWDASTVLDDENQFYKCPLTGELIHPVHL 319          
BLAST of EWM26974.1 vs. NCBI_GenBank
Match: gi|1210527468|dbj|GAX13753.1| (hypothetical protein FisN_30Lh039 [Fistulifera solaris])

HSP 1 Score: 72.7886 bits (177), Expect = 1.800e-11
Identity = 29/77 (37.66%), Postives = 49/77 (63.64%), Query Frame = 0
Query:  458 RRRIAFHEDVCVVHIPSHTEYSRRIKSQYWTSPAEIYEMACRNLVEFEAEGYSWEAALEEEHLYWCPDTASFVHPAH 534
            R+ + F+E V VV IP   EY R+++S+ W++  E+ +   RN+VEF AEG++W   +E+E ++ C  +   +HP H
Sbjct:   66 RQSLQFNETVTVVAIPMRNEYCRQVRSKLWSNRLELQQNIARNVVEFAAEGWNWRTVVEDERMHVCAFSGQRIHPIH 142          
The following BLAST results are available for this feature:
BLAST of EWM26974.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109141|gb|EWM26974.1|0.000e+0100.00hypothetical protein Naga_100127g14 [Nannochlorops... [more]
gi|299470113|emb|CBN78142.1|1.753e-1744.57hypothetical protein Esi_0100_0046 [Ectocarpus sil... [more]
gi|224000513|ref|XP_002289929.1|1.229e-1444.09predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210519255|dbj|GAX21839.1|9.565e-1439.76hypothetical protein FisN_30Hh039 [Fistulifera sol... [more]
gi|1210521389|dbj|GAX19846.1|1.468e-1342.86hypothetical protein FisN_11Lh280 [Fistulifera sol... [more]
gi|1210526556|dbj|GAX14737.1|1.558e-1342.86hypothetical protein FisN_11Hh280 [Fistulifera sol... [more]
gi|219117293|ref|XP_002179441.1|1.443e-1238.61predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|224002759|ref|XP_002291051.1|4.797e-1237.97hypothetical protein THAPSDRAFT_269066 [Thalassios... [more]
gi|397623827|gb|EJK67162.1|1.538e-1144.30hypothetical protein THAOC_11846 [Thalassiosira oc... [more]
gi|1210527468|dbj|GAX13753.1|1.800e-1137.66hypothetical protein FisN_30Lh039 [Fistulifera sol... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3703rna3703Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications