EWM26978.1, cds3684 (CDS) Nannochloropsis gaditana

Overview
NameEWM26978.1
Unique Namecds3684
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:992944..994103 -
Alignment locationCM002461.1:992753..992828 -

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Properties
Property NameValue
Protein idEWM26978.1
ProductPhosphatidylinositol-glycan biosynthesis class S protein
Orig transcript idgnl|cribi|Naga_100127g3.6210.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:992944..994103 -
CM002461.1supercontigCM002461.1:992753..992828 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0006464cellular protein modification process
GO:0006629lipid metabolic process
GO:0016255attachment of GPI anchor to protein
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
GO:0016020membrane
GO:0042765GPI-anchor transamidase complex
Vocabulary: INTERPRO
TermDefinition
IPR019540PtdIno-glycan_biosynth_class_S
Homology
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BLAST of EWM26978.1 vs. NCBI_GenBank
Match: gi|585109145|gb|EWM26978.1| (Phosphatidylinositol-glycan biosynthesis class S protein [Nannochloropsis gaditana])

HSP 1 Score: 824.698 bits (2129), Expect = 0.000e+0
Identity = 411/411 (100.00%), Postives = 411/411 (100.00%), Query Frame = 0 
Query:    1 MAGTRLWTQLWFLAGVVVLAPFAFRLAWWQEGFERVSFPDIPSSLRPPGAPFLPFLVVLVGHDFSSSLMEMEVDDFRVALKRVSFIAASSGQENETLESFARRAVAENAAPEMDANMLQYWLVLLPSSLPMSSTEADSSTPSISGITWRLEERFGYARRGNDDHSIIQQAGRELSHARAQISFRPATSTPLPLAREIQLTLVSQDASVRFCRWNRAHLLNRHLNPLVRALIPLTTFLPSLQLLPYGTLLPVQTKHAHGYPLPLSTLTGIRQYWETTLLPPSLSLVATPGPMASPLRFLFYCPASSSEQSLAFMDDVEEGLRGTSNASSHHAVSTGLEIPGWGGALVLPAQNLSSSPPSAHGPHAPTCFLTEATYHHILSFLQPILRTTPSVLSPSSATFVAPTPGCLFLPT 411
            MAGTRLWTQLWFLAGVVVLAPFAFRLAWWQEGFERVSFPDIPSSLRPPGAPFLPFLVVLVGHDFSSSLMEMEVDDFRVALKRVSFIAASSGQENETLESFARRAVAENAAPEMDANMLQYWLVLLPSSLPMSSTEADSSTPSISGITWRLEERFGYARRGNDDHSIIQQAGRELSHARAQISFRPATSTPLPLAREIQLTLVSQDASVRFCRWNRAHLLNRHLNPLVRALIPLTTFLPSLQLLPYGTLLPVQTKHAHGYPLPLSTLTGIRQYWETTLLPPSLSLVATPGPMASPLRFLFYCPASSSEQSLAFMDDVEEGLRGTSNASSHHAVSTGLEIPGWGGALVLPAQNLSSSPPSAHGPHAPTCFLTEATYHHILSFLQPILRTTPSVLSPSSATFVAPTPGCLFLPT
Sbjct:    1 MAGTRLWTQLWFLAGVVVLAPFAFRLAWWQEGFERVSFPDIPSSLRPPGAPFLPFLVVLVGHDFSSSLMEMEVDDFRVALKRVSFIAASSGQENETLESFARRAVAENAAPEMDANMLQYWLVLLPSSLPMSSTEADSSTPSISGITWRLEERFGYARRGNDDHSIIQQAGRELSHARAQISFRPATSTPLPLAREIQLTLVSQDASVRFCRWNRAHLLNRHLNPLVRALIPLTTFLPSLQLLPYGTLLPVQTKHAHGYPLPLSTLTGIRQYWETTLLPPSLSLVATPGPMASPLRFLFYCPASSSEQSLAFMDDVEEGLRGTSNASSHHAVSTGLEIPGWGGALVLPAQNLSSSPPSAHGPHAPTCFLTEATYHHILSFLQPILRTTPSVLSPSSATFVAPTPGCLFLPT 411
The following BLAST results are available for this feature:
BLAST of EWM26978.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585109145|gb|EWM26978.1|0.000e+0100.00Phosphatidylinositol-glycan biosynthesis class S p... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3693rna3693Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications