EWM27014.1, cds3659 (CDS) Nannochloropsis gaditana

Overview
NameEWM27014.1
Unique Namecds3659
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:922085..923182 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27014.1
Productdna topoisomerase
Orig transcript idgnl|cribi|Naga_100444g1.1594.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:922085..923182 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006259DNA metabolic process
GO:0016043cellular component organization
GO:0006265DNA topological change
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003917DNA topoisomerase type I activity
GO:0003916DNA topoisomerase activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR023405Topo_IA_core_domain
IPR000380Topo_IA
IPR013497Topo_IA_cen
IPR013824Topo_IA_cen_sub1
IPR006171Toprim_domain
IPR003601Topo_IA_2
Homology
BLAST of EWM27014.1 vs. NCBI_GenBank
Match: gi|585109185|gb|EWM27014.1| (dna topoisomerase [Nannochloropsis gaditana])

HSP 1 Score: 749.584 bits (1934), Expect = 0.000e+0
Identity = 365/365 (100.00%), Postives = 365/365 (100.00%), Query Frame = 0
Query:    1 MAPVKVLNVAEKPSVAKEISAILSGGNRAPRRRQGGSDYNPIWEFGCQIRGELVDMVFTSVRGHLLEMEFVEPYCKNWHACRPGDLFTIPVEKKVGKDKESLERCLKSEARVCQRLILWLDCDLEGENIAFEVMDVCRAANSRLRVERARFSALIPREIWHALEHLVEPNVYQSEAVNARMEIDLRIGAAFTRFQTLKLQGKFDGVEDSIISYGPCQFPTMGFVVDRYKAIESFQREEFWRIQMAYRGGREDGDGGPQGITRFQWKRERLFDEAACAVLYVMVVEAKEARVTHVNAAPATRDRPLPLSTVELQKKASRLGQGGRKGGRGKGIGKKGEWEERRWRRMRGASSGTWGRANFGARYIS 365
            MAPVKVLNVAEKPSVAKEISAILSGGNRAPRRRQGGSDYNPIWEFGCQIRGELVDMVFTSVRGHLLEMEFVEPYCKNWHACRPGDLFTIPVEKKVGKDKESLERCLKSEARVCQRLILWLDCDLEGENIAFEVMDVCRAANSRLRVERARFSALIPREIWHALEHLVEPNVYQSEAVNARMEIDLRIGAAFTRFQTLKLQGKFDGVEDSIISYGPCQFPTMGFVVDRYKAIESFQREEFWRIQMAYRGGREDGDGGPQGITRFQWKRERLFDEAACAVLYVMVVEAKEARVTHVNAAPATRDRPLPLSTVELQKKASRLGQGGRKGGRGKGIGKKGEWEERRWRRMRGASSGTWGRANFGARYIS
Sbjct:    1 MAPVKVLNVAEKPSVAKEISAILSGGNRAPRRRQGGSDYNPIWEFGCQIRGELVDMVFTSVRGHLLEMEFVEPYCKNWHACRPGDLFTIPVEKKVGKDKESLERCLKSEARVCQRLILWLDCDLEGENIAFEVMDVCRAANSRLRVERARFSALIPREIWHALEHLVEPNVYQSEAVNARMEIDLRIGAAFTRFQTLKLQGKFDGVEDSIISYGPCQFPTMGFVVDRYKAIESFQREEFWRIQMAYRGGREDGDGGPQGITRFQWKRERLFDEAACAVLYVMVVEAKEARVTHVNAAPATRDRPLPLSTVELQKKASRLGQGGRKGGRGKGIGKKGEWEERRWRRMRGASSGTWGRANFGARYIS 365          
BLAST of EWM27014.1 vs. NCBI_GenBank
Match: gi|920697871|gb|KOM41096.1| (hypothetical protein LR48_Vigan04g129400 [Vigna angularis])

HSP 1 Score: 322.783 bits (826), Expect = 1.715e-105
Identity = 171/320 (53.44%), Postives = 218/320 (68.12%), Query Frame = 0
Query:    4 VKVLNVAEKPSVAKEISAILSGGNRAPRRRQGGSDYNPIWEFGCQIRGELVDMVFTSVRGHLLEMEFVEPYCKNWHACRPGDLFTIPVEKKVGKDKESLERCLKSEARVCQRLILWLDCDLEGENIAFEVMDVCRAANSRLRVERARFSALIPREIWHALEHLVEPNVYQSEAVNARMEIDLRIGAAFTRFQTLKLQGKF--DGVEDS---IISYGPCQFPTMGFVVDRYKAIESFQREEFWRIQMAYRGGREDGDGGPQGITRFQWKRERLFDEAACAVLYVMVVEAKEARVTHVNAAPATRDRPLPLSTVELQKKASR 318
            + VLNVAEKPSVAK +S ILS  N+  R R+G S YN I+EF   IRG+   M+FTSV GHL+E+EF E Y + WHAC P DLF  PV K V +DK+ ++R L+ EAR CQ L+LWLDCD EGENIAFEV+DVC A N  L ++RARFSALI REI H++++L EP    ++AV+AR EIDLRIGA+FTRFQT+ ++  F  D   D    ++SYGPCQFPT+GFVV+RY  I++ + EEFW I  A+     D DG    I +F W R  LFD     ++Y M VE   A VT+V      +  P PL+T+EL+K+ASR
Sbjct:    1 MNVLNVAEKPSVAKSVSTILSR-NQGMRMREGRSRYNKIFEFNYTIRGQPCHMLFTSVTGHLMELEFDERY-RKWHACNPADLFRAPVHKSVPEDKKDIKRTLEEEARRCQWLVLWLDCDREGENIAFEVIDVCTAVNPHLTIKRARFSALIEREIHHSVQNLEEPKKSLADAVDARQEIDLRIGASFTRFQTMLMKDAFAIDTATDGRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWSINCAH-----DSDG---RIAKFSWMRGHLFDYTCAVIIYEMCVEELTATVTNVRLQEKLKYPPHPLNTIELEKRASR 310          
BLAST of EWM27014.1 vs. NCBI_GenBank
Match: gi|641838556|gb|KDO57497.1| (hypothetical protein CISIN_1g0469971mg, partial [Citrus sinensis])

HSP 1 Score: 320.087 bits (819), Expect = 2.663e-104
Identity = 164/320 (51.25%), Postives = 218/320 (68.12%), Query Frame = 0
Query:    3 PVKVLNVAEKPSVAKEISAILSGGNRAPRRRQGGSDYNPIWEFGCQIRGELVDMVFTSVRGHLLEMEFVEPYCKNWHACRPGDLFTIPVEKKVGKDKESLERCLKSEARVCQRLILWLDCDLEGENIAFEVMDVCRAANSRLRVERARFSALIPREIWHALEHLVEPNVYQSEAVNARMEIDLRIGAAFTRFQTLKLQG-KFDGVEDS---IISYGPCQFPTMGFVVDRYKAIESFQREEFWRIQMAYRGGREDGDGGPQGITRFQWKRERLFDEAACAVLYVMVVEAKEARVTHVNAAPATRDRPLPLSTVELQKKASR 318
            P+ VLNVAEKPSVAK ++ ILS  N+  R R+G S YN I+EF   IRG+   M+ TSV GHL+E++F E Y + WH+C P DL+  PV K V +DK+ +++ L+ EAR CQ L+LWLDCD EGENIAFEV++VCRA N  L + RARFSALI REI  A+++LV+PN + ++AV+AR EIDLRIGA+FTRFQT+ L+    D V D    ++SYGPCQFPT+GFVV+RY  I++ + EEFW I  +++          +G   F W R  LFD  +  ++Y M V+   A VT V      +  P PLST+EL+K+ASR
Sbjct:    7 PINVLNVAEKPSVAKSVAGILSK-NQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELDFDERY-RKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHK--------SEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASR 316          
BLAST of EWM27014.1 vs. NCBI_GenBank
Match: gi|1137179306|gb|OMO56040.1| (DNA topoisomerase, type IA [Corchorus olitorius])

HSP 1 Score: 334.724 bits (857), Expect = 1.496e-103
Identity = 171/320 (53.44%), Postives = 222/320 (69.38%), Query Frame = 0
Query:    4 VKVLNVAEKPSVAKEISAILSGGNRAPRRRQGGSDYNPIWEFGCQIRGELVDMVFTSVRGHLLEMEFVEPYCKNWHACRPGDLFTIPVEKKVGKDKESLERCLKSEARVCQRLILWLDCDLEGENIAFEVMDVCRAANSRLRVERARFSALIPREIWHALEHLVEPNVYQSEAVNARMEIDLRIGAAFTRFQTLKLQGKF--DGVEDS---IISYGPCQFPTMGFVVDRYKAIESFQREEFWRIQMAYRGGREDGDGGPQGITRFQWKRERLFDEAACAVLYVMVVEAKEARVTHVNAAPATRDRPLPLSTVELQKKASR 318
            +KVLNVAEKPSVAK +S ILS  N+  R R+G S YN I+EF   IRG+   M+FTSV GHL+E+EF + + + WH+C P DL+  PV K V +DK  ++R L+ EAR CQ L+LWLDCD EGENIAFEV+DVCRAAN  L + RARFSALI REI HA+++LV+PN++ S+AV+AR EIDLRIGA+FTRFQT+ L+ KF  D   D    ++SYGPCQFPT+GF+V+RY  I+S + EEFW I  +++          +G+  F W R  LFD     ++Y M V+   A VT V      +  P PLST+EL+K+ASR
Sbjct:    5 IKVLNVAEKPSVAKSVSGILSS-NQGLRVREGRSRYNKIFEFNYSIRGQHCQMLFTSVTGHLMELEFEDRF-RKWHSCDPVDLYHAPVRKHVPEDKIDIKRTLEEEARKCQWLVLWLDCDREGENIAFEVIDVCRAANRHLTIRRARFSALIDREIHHAMQNLVDPNIWFSDAVDARQEIDLRIGASFTRFQTILLRDKFIIDSATDDRNLVLSYGPCQFPTLGFIVERYWEIQSHEPEEFWTINCSHKSD--------EGLATFNWMRGHLFDHTCAVIIYEMCVQEPSATVTKVQQQEKFKYPPYPLSTIELEKRASR 314          
BLAST of EWM27014.1 vs. NCBI_GenBank
Match: gi|970648329|gb|KUF87901.1| (hypothetical protein AM588_10005244 [Phytophthora nicotianae])

HSP 1 Score: 325.479 bits (833), Expect = 3.617e-103
Identity = 171/341 (50.15%), Postives = 229/341 (67.16%), Query Frame = 0
Query:    4 VKVLNVAEKPSVAKEISAILSGGN----------------------RAPRRRQGGSDYNPIWEFGCQIRGELVDMVFTSVRGHLLEMEFVEPYCKNWHACRPGDLFTIPVEKKVGKD--KESLERCLKSEARVCQRLILWLDCDLEGENIAFEVMDVCRAANSRLRVERARFSALIPREIWHALEHLVEPNVYQSEAVNARMEIDLRIGAAFTRFQTLKLQGKFDGV--EDSIISYGPCQFPTMGFVVDRYKAIESFQREEFWRIQMAYRGGREDGDGGPQGITRFQWKRERLFDEAACAVLYVMVVEAKEARVTHVNAAPATRDRPLPLSTVELQKKASR 318
            +KVLNVAEKPSVAKEI+ ILS G                       R   +R G S YN ++EF  QIRG+ V MV TSV GH++E++F +   ++WH+C P DLFT PV K++  D  ++ +E+ L  EA+  Q L+LWLDCD EGENIA+EV  +C   N RLRV RARFSALIPR+I HA+++L EPN   S AV+AR EIDLRIGAAFTRFQT+++Q +F  +  E ++ISYGPCQFPT+GFVV+R+  I++F+RE F+ I + ++  R D    P   T F+WKR  LFD  AC  +Y  +VE++ A +  V+  P+ + +PLPL+TVELQK+ SR
Sbjct:    1 MKVLNVAEKPSVAKEIANILSSGRSQRVCCAFTALHLSALSLINLYRVCCQRAGFSKYNALFEFPYQIRGQQVQMVVTSVTGHIMELDF-DASVRSWHSCDPVDLFTAPVTKRIRSDDTQKKIEKSLMKEAKHSQWLVLWLDCDREGENIAYEVKSICEKTNRRLRVFRARFSALIPRDIIHAVQNLSEPNEKLSLAVDARSEIDLRIGAAFTRFQTMRIQSRFPALSQEKNVISYGPCQFPTLGFVVERFLKIQNFEREAFYYISVTHQ--RTDQLDAP--TTTFKWKRGHLFDRMACLCIYECLVESQTATIESVDKRPSWKRKPLPLTTVELQKRVSR 336          
BLAST of EWM27014.1 vs. NCBI_GenBank
Match: gi|568007494|gb|ETL81733.1| (hypothetical protein L917_18014 [Phytophthora parasitica] >gi|570969629|gb|ETP32748.1| hypothetical protein F442_18633 [Phytophthora parasitica P10297])

HSP 1 Score: 332.798 bits (852), Expect = 8.524e-103
Identity = 171/319 (53.61%), Postives = 229/319 (71.79%), Query Frame = 0
Query:    4 VKVLNVAEKPSVAKEISAILSGGNRAPRRRQGGSDYNPIWEFGCQIRGELVDMVFTSVRGHLLEMEFVEPYCKNWHACRPGDLFTIPVEKKVGKD--KESLERCLKSEARVCQRLILWLDCDLEGENIAFEVMDVCRAANSRLRVERARFSALIPREIWHALEHLVEPNVYQSEAVNARMEIDLRIGAAFTRFQTLKLQGKFDGV--EDSIISYGPCQFPTMGFVVDRYKAIESFQREEFWRIQMAYRGGREDGDGGPQGITRFQWKRERLFDEAACAVLYVMVVEAKEARVTHVNAAPATRDRPLPLSTVELQKKASR 318
            +KVLNVAEKPSVAKEI+ ILS G    +RR G S YN ++EF  QIRG+ V MV TSV GH++E++F +   ++WH+C P DLFT PV K++  D  ++ +E+ L  EA+  Q L+LWLDCD EGENIA+EV  +C   N RLRV RARFSALIPR+I HA+++L EPN   S AV+AR EIDLRIGAAFTRFQT+++Q +F  +  E ++ISYGPCQFPT+GFVV+R+  I++F+RE F+ I + ++  R D    P   T F+WKR  LFD  AC  +Y  +VE++ A +  V+  P+ + +PLPL+TVELQK+ SR
Sbjct:    1 MKVLNVAEKPSVAKEIANILSSGRS--QRRAGFSKYNALFEFPYQIRGQQVQMVVTSVTGHIMELDF-DASVRSWHSCDPVDLFTAPVTKRIRSDDTQKKIEKSLMKEAKHSQWLVLWLDCDREGENIAYEVKSICEKTNRRLRVFRARFSALIPRDIIHAVQNLSEPNEKLSLAVDARSEIDLRIGAAFTRFQTMRIQSRFPALSQEKNVISYGPCQFPTLGFVVERFLKIQNFEREAFYYISVTHQ--RTDQLDAP--TTTFKWKRGHLFDRMACLCIYECLVESQTATIESVDKRPSWKRKPLPLTTVELQKRVSR 312          
BLAST of EWM27014.1 vs. NCBI_GenBank
Match: gi|566011849|gb|ETI34760.1| (hypothetical protein F443_18822 [Phytophthora parasitica P1569] >gi|567949325|gb|ETK75057.1| hypothetical protein L915_18290 [Phytophthora parasitica] >gi|567977984|gb|ETL28478.1| hypothetical protein L916_18199 [Phytophthora parasitica] >gi|568037354|gb|ETM34939.1| hypothetical protein L914_18097 [Phytophthora parasitica] >gi|570939354|gb|ETP04611.1| hypothetical protein F441_18674 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 332.798 bits (852), Expect = 8.798e-103
Identity = 171/319 (53.61%), Postives = 229/319 (71.79%), Query Frame = 0
Query:    4 VKVLNVAEKPSVAKEISAILSGGNRAPRRRQGGSDYNPIWEFGCQIRGELVDMVFTSVRGHLLEMEFVEPYCKNWHACRPGDLFTIPVEKKVGKD--KESLERCLKSEARVCQRLILWLDCDLEGENIAFEVMDVCRAANSRLRVERARFSALIPREIWHALEHLVEPNVYQSEAVNARMEIDLRIGAAFTRFQTLKLQGKFDGV--EDSIISYGPCQFPTMGFVVDRYKAIESFQREEFWRIQMAYRGGREDGDGGPQGITRFQWKRERLFDEAACAVLYVMVVEAKEARVTHVNAAPATRDRPLPLSTVELQKKASR 318
            +KVLNVAEKPSVAKEI+ ILS G    +RR G S YN ++EF  QIRG+ V MV TSV GH++E++F +   ++WH+C P DLFT PV K++  D  ++ +E+ L  EA+  Q L+LWLDCD EGENIA+EV  +C   N RLRV RARFSALIPR+I HA+++L EPN   S AV+AR EIDLRIGAAFTRFQT+++Q +F  +  E ++ISYGPCQFPT+GFVV+R+  I++F+RE F+ I + ++  R D    P   T F+WKR  LFD  AC  +Y  +VE++ A +  V+  P+ + +PLPL+TVELQK+ SR
Sbjct:    1 MKVLNVAEKPSVAKEIANILSSGRS--QRRAGFSKYNALFEFPYQIRGQQVQMVVTSVTGHIMELDF-DASVRSWHSCDPVDLFTAPVTKRIRSDDTQKKIEKSLMKEAKHSQWLVLWLDCDREGENIAYEVKSICEKTNRRLRVFRARFSALIPRDIIHAVQNLSEPNEKLSLAVDARSEIDLRIGAAFTRFQTMRIQSRFPALSQEKNVISYGPCQFPTLGFVVERFLKIQNFEREAFYYISVTHQ--RTDQLDAP--TTTFKWKRGHLFDRMACLCIYECLVESQTATIESVDKRPSWKRKPLPLTTVELQKRVSR 312          
BLAST of EWM27014.1 vs. NCBI_GenBank
Match: gi|675209357|ref|XP_008913563.1| (hypothetical protein PPTG_17637 [Phytophthora parasitica INRA-310] >gi|568086344|gb|ETN01236.1| hypothetical protein PPTG_17637 [Phytophthora parasitica INRA-310])

HSP 1 Score: 332.798 bits (852), Expect = 8.891e-103
Identity = 171/319 (53.61%), Postives = 229/319 (71.79%), Query Frame = 0
Query:    4 VKVLNVAEKPSVAKEISAILSGGNRAPRRRQGGSDYNPIWEFGCQIRGELVDMVFTSVRGHLLEMEFVEPYCKNWHACRPGDLFTIPVEKKVGKD--KESLERCLKSEARVCQRLILWLDCDLEGENIAFEVMDVCRAANSRLRVERARFSALIPREIWHALEHLVEPNVYQSEAVNARMEIDLRIGAAFTRFQTLKLQGKFDGV--EDSIISYGPCQFPTMGFVVDRYKAIESFQREEFWRIQMAYRGGREDGDGGPQGITRFQWKRERLFDEAACAVLYVMVVEAKEARVTHVNAAPATRDRPLPLSTVELQKKASR 318
            +KVLNVAEKPSVAKEI+ ILS G    +RR G S YN ++EF  QIRG+ V MV TSV GH++E++F +   ++WH+C P DLFT PV K++  D  ++ +E+ L  EA+  Q L+LWLDCD EGENIA+EV  +C   N RLRV RARFSALIPR+I HA+++L EPN   S AV+AR EIDLRIGAAFTRFQT+++Q +F  +  E ++ISYGPCQFPT+GFVV+R+  I++F+RE F+ I + ++  R D    P   T F+WKR  LFD  AC  +Y  +VE++ A +  V+  P+ + +PLPL+TVELQK+ SR
Sbjct:    1 MKVLNVAEKPSVAKEIANILSSGRS--QRRAGFSKYNALFEFPYQIRGQQVQMVVTSVTGHIMELDF-DASVRSWHSCDPVDLFTAPVTKRIRSDDTQKKIEKSLMKEAKHSQWLVLWLDCDREGENIAYEVKSICEKTNRRLRVFRARFSALIPRDIIHAVQNLSEPNEKLSLAVDARSEIDLRIGAAFTRFQTMRIQSRFPALSQEKNVISYGPCQFPTLGFVVERFLKIQNFEREAFYYISVTHQ--RTDQLDAP--TTTFKWKRGHLFDRMACLCIYECLVESQTATIESVDKRPSWKRKPLPLTTVELQKRVSR 312          
BLAST of EWM27014.1 vs. NCBI_GenBank
Match: gi|1045399136|dbj|GAU19575.1| (hypothetical protein TSUD_303880 [Trifolium subterraneum])

HSP 1 Score: 323.168 bits (827), Expect = 2.993e-102
Identity = 172/320 (53.75%), Postives = 220/320 (68.75%), Query Frame = 0
Query:    4 VKVLNVAEKPSVAKEISAILSGGNRAPRRRQGGSDYNPIWEFGCQIRGELVDMVFTSVRGHLLEMEFVEPYCKNWHACRPGDLFTIPVEKKVGKDKESLERCLKSEARVCQRLILWLDCDLEGENIAFEVMDVCRAANSRLRVERARFSALIPREIWHALEHLVEPNVYQSEAVNARMEIDLRIGAAFTRFQTLKLQGKF--DGVEDS---IISYGPCQFPTMGFVVDRYKAIESFQREEFWRIQMAYRGGREDGDGGPQGITRFQWKRERLFDEAACAVLYVMVVEAKEARVTHVNAAPATRDRPLPLSTVELQKKASR 318
            V VLNVAEKPSVAK +S ILS  N+  R R G S YN I+EF   IRG+   M+FTSV GHL+E+EF + Y + W++C P DLF  PV K V +DK+ ++R L+ EAR CQ L+LWLDCD EGENIAFEV+DVC AAN RL ++RARFSALI REI  A+++LVEPN + ++AV+AR EIDLRIGA+FTRFQT+ ++  F  D V D    I+SYGPCQFPT+GFVV+RY  I++ + E FW I  ++R          +GI  F W R  LFD     ++Y M +E   A VT+V      +  P PLST+EL+K+ASR
Sbjct:    6 VTVLNVAEKPSVAKSVSNILSR-NQNLRVRDGRSRYNRIFEFDYTIRGQPCHMLFTSVIGHLMELEFDDRY-RKWYSCDPADLFQAPVHKSVPEDKKDIKRTLEEEARRCQWLVLWLDCDREGENIAFEVVDVCTAANPRLTIKRARFSALIDREIHQAVQNLVEPNKWFADAVDARQEIDLRIGASFTRFQTMLMKDAFVIDTVTDGRNIILSYGPCQFPTLGFVVERYWEIQAHEPENFWSINCSHR--------SEEGIATFSWGRGHLFDYTYAVIIYEMCIEEPTATVTNVRQQEKLKYPPHPLSTIELEKRASR 315          
BLAST of EWM27014.1 vs. NCBI_GenBank
Match: gi|301092946|ref|XP_002997323.1| (DNA topoisomerase, putative [Phytophthora infestans T30-4] >gi|262110843|gb|EEY68895.1| DNA topoisomerase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 330.487 bits (846), Expect = 4.177e-102
Identity = 169/319 (52.98%), Postives = 227/319 (71.16%), Query Frame = 0
Query:    4 VKVLNVAEKPSVAKEISAILSGGNRAPRRRQGGSDYNPIWEFGCQIRGELVDMVFTSVRGHLLEMEFVEPYCKNWHACRPGDLFTIPVEKKVGKD--KESLERCLKSEARVCQRLILWLDCDLEGENIAFEVMDVCRAANSRLRVERARFSALIPREIWHALEHLVEPNVYQSEAVNARMEIDLRIGAAFTRFQTLKLQGKFDGV--EDSIISYGPCQFPTMGFVVDRYKAIESFQREEFWRIQMAYRGGREDGDGGPQGITRFQWKRERLFDEAACAVLYVMVVEAKEARVTHVNAAPATRDRPLPLSTVELQKKASR 318
            +KVLNVAEKPSVAKEI+ ILS G      R G S YN ++EF  Q+RG+ V MV TSV GH++E++F +   ++WH+C P DLFT PV KK+  D  ++ +E+ L  EA+  Q L+LWLDCD EGENIA+EV  +C   NSRLRV RARFSALIPR+I HA+++L +PN   S AV+AR EIDLRIGAAFTRFQT+++Q +F  +  E ++ISYGPCQFPT+GFVV+R+  I +F+RE F+ I + ++  + D    P   T F+WKR   FD  AC  +Y  +VE++ A +  V+  P+ + +PLPL+TVELQK+ASR
Sbjct:    1 MKVLNVAEKPSVAKEIANILSSGRSHRVCRAGFSKYNALFEFPYQVRGQQVQMVVTSVTGHIMELDF-DASVRSWHSCDPVDLFTAPVTKKIRSDETQKKIEKTLMEEAKHSQWLVLWLDCDREGENIAYEVKSICEKTNSRLRVFRARFSALIPRDIVHAVQNLSQPNEKLSLAVDARSEIDLRIGAAFTRFQTMRIQSRFPALNQEKNVISYGPCQFPTLGFVVERFLKIRNFEREAFYYISVTHQ--QTDQPDAP--TTTFKWKRGHFFDRMACLCIYESLVESQTAAIESVDKRPSWKRKPLPLTTVELQKRASR 314          
The following BLAST results are available for this feature:
BLAST of EWM27014.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109185|gb|EWM27014.1|0.000e+0100.00dna topoisomerase [Nannochloropsis gaditana][more]
gi|920697871|gb|KOM41096.1|1.715e-10553.44hypothetical protein LR48_Vigan04g129400 [Vigna an... [more]
gi|641838556|gb|KDO57497.1|2.663e-10451.25hypothetical protein CISIN_1g0469971mg, partial [C... [more]
gi|1137179306|gb|OMO56040.1|1.496e-10353.44DNA topoisomerase, type IA [Corchorus olitorius][more]
gi|970648329|gb|KUF87901.1|3.617e-10350.15hypothetical protein AM588_10005244 [Phytophthora ... [more]
gi|568007494|gb|ETL81733.1|8.524e-10353.61hypothetical protein L917_18014 [Phytophthora para... [more]
gi|566011849|gb|ETI34760.1|8.798e-10353.61hypothetical protein F443_18822 [Phytophthora para... [more]
gi|675209357|ref|XP_008913563.1|8.891e-10353.61hypothetical protein PPTG_17637 [Phytophthora para... [more]
gi|1045399136|dbj|GAU19575.1|2.993e-10253.75hypothetical protein TSUD_303880 [Trifolium subter... [more]
gi|301092946|ref|XP_002997323.1|4.177e-10252.98DNA topoisomerase, putative [Phytophthora infestan... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3668rna3668Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications