EWM27019.1, cds3658 (CDS) Nannochloropsis gaditana

Overview
NameEWM27019.1
Unique Namecds3658
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:918406..919338 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27019.1
Productubiquinone biosynthesis protein coq4 mitochondrial-like protein
Orig transcript idgnl|cribi|Naga_100444g2.1599.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:918406..919338 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006744ubiquinone biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005739mitochondrion
GO:0005743mitochondrial inner membrane
Vocabulary: INTERPRO
TermDefinition
IPR027540Coq4_euk
IPR007715Coq4
Homology
BLAST of EWM27019.1 vs. NCBI_GenBank
Match: gi|585109190|gb|EWM27019.1| (ubiquinone biosynthesis protein coq4 mitochondrial-like protein [Nannochloropsis gaditana])

HSP 1 Score: 634.795 bits (1636), Expect = 0.000e+0
Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0
Query:    1 MHPLTNMLHRNITLTSKVPYLMRAKVVSLRGTCTTATSSLLGVPSRPQAPCARTFKRMRPFSTTSSQSSGGKETSPPAVPETPLYSSHIPTSGFQKLYIAGFSAATAFRDPERGDMVAALGETTGTRALQRLRRAMSADPVGRELLAAKPDIKEDSTRPDRLRRLPEGTFGREYARFLDHHGYSPDERAAVRFVDDAELAFVMQRYRQVHDFWHVLCGLPPTVLGELALKWFEMVQTRLPIAAFSGVVGPLSLSAQERKLLKEQYIPWAVRAAVKARPLMCVWYERSFEEPLELMRKRLQIVTAPPMTAV 310
            MHPLTNMLHRNITLTSKVPYLMRAKVVSLRGTCTTATSSLLGVPSRPQAPCARTFKRMRPFSTTSSQSSGGKETSPPAVPETPLYSSHIPTSGFQKLYIAGFSAATAFRDPERGDMVAALGETTGTRALQRLRRAMSADPVGRELLAAKPDIKEDSTRPDRLRRLPEGTFGREYARFLDHHGYSPDERAAVRFVDDAELAFVMQRYRQVHDFWHVLCGLPPTVLGELALKWFEMVQTRLPIAAFSGVVGPLSLSAQERKLLKEQYIPWAVRAAVKARPLMCVWYERSFEEPLELMRKRLQIVTAPPMTAV
Sbjct:    1 MHPLTNMLHRNITLTSKVPYLMRAKVVSLRGTCTTATSSLLGVPSRPQAPCARTFKRMRPFSTTSSQSSGGKETSPPAVPETPLYSSHIPTSGFQKLYIAGFSAATAFRDPERGDMVAALGETTGTRALQRLRRAMSADPVGRELLAAKPDIKEDSTRPDRLRRLPEGTFGREYARFLDHHGYSPDERAAVRFVDDAELAFVMQRYRQVHDFWHVLCGLPPTVLGELALKWFEMVQTRLPIAAFSGVVGPLSLSAQERKLLKEQYIPWAVRAAVKARPLMCVWYERSFEEPLELMRKRLQIVTAPPMTAV 310          
BLAST of EWM27019.1 vs. NCBI_GenBank
Match: gi|301101922|ref|XP_002900049.1| (ubiquinone biosynthesis protein COQ4 [Phytophthora infestans T30-4] >gi|262102624|gb|EEY60676.1| ubiquinone biosynthesis protein COQ4 [Phytophthora infestans T30-4])

HSP 1 Score: 262.692 bits (670), Expect = 3.852e-84
Identity = 125/223 (56.05%), Postives = 159/223 (71.30%), Query Frame = 0
Query:   85 YSSHIPTSGFQKLYIAGFSAATAFRDPERGDMVAALGETTGTRALQRLRRAMSADPVGRELLAAKPDIKEDSTRPDRLRRLPEGTFGREYARFLDHHGYSPDERAAVRFVDDAELAFVMQRYRQVHDFWHVLCGLPPTVLGELALKWFEMVQTRLPIAAFSGVVGPLSLSAQERKLLKEQYIPWAVRAAVKARPLMCVWYERSFEEPLELMRKRLQIVTAPPM 307
            Y SH+PTS  QKL ++  SA T F +PERGDM+AALGE TG  AL+R+   M ADPVG  +LA KP I+ D    D LR LPE +FGR YA F+D HG+  D R+ VRFVDD ELA+VMQR+R++HDFWH L  +PPT LGE+ALK+ EM  ++LP++A S  VGPL LS++ER LL + Y+PWA RA+  A  L CV YE  FE P+E +R+RL +  APP+
Sbjct:   14 YDSHMPTSPLQKLVLSVTSALTVFANPERGDMLAALGEVTGRDALRRIHARMCADPVGARILAEKPVIRNDKIDMDYLRALPEDSFGRRYATFMDSHGFDADGRSPVRFVDDPELAYVMQRHRELHDFWHTLFDVPPTELGEIALKYVEMAHSKLPVSALSAFVGPLRLSSEERCLLVKVYVPWANRASRNAHSLHCVMYEEEFETPIEKLRQRLNVEVAPPL 236          
BLAST of EWM27019.1 vs. NCBI_GenBank
Match: gi|1173937775|gb|OQR88422.1| (ubiquinone biosynthesis protein COQ4 [Achlya hypogyna])

HSP 1 Score: 258.455 bits (659), Expect = 2.636e-82
Identity = 123/224 (54.91%), Postives = 162/224 (72.32%), Query Frame = 0
Query:   84 LYSSHIPTSGFQKLYIAGFSAATAFRDPERGDMVAALGETTGTRALQRLRRAMSADPVGRELLAAKPDIKEDSTRPDRLRRLPEGTFGREYARFLDHHGYSPDERAAVRFVDDAELAFVMQRYRQVHDFWHVLCGLPPTVLGELALKWFEMVQTRLPIAAFSGVVGPLSLSAQERKLLKEQYIPWAVRAAVKARPLMCVWYERSFEEPLELMRKRLQIVTAPPM 307
            L++ H+PT+  QK+ +A  +A +   +PERGDM+AALG+ TG  AL+++   M +DP G E+LA KP I+   T  D LR LP+ +FG  Y +F+D HG+  D RA VRFVDD ELA+V+QRYR++HDFWHVL GLPPTV GELALK+ E+VQT LP+AA SG+VGPL LS  ERK L   Y+PWA +A  +A  LM V+YER +E  LE +R RL+I+ APP+
Sbjct:   32 LHAHHVPTTPLQKILVAATAAVSVMANPERGDMLAALGDATGEVALRQMHLKMCSDPTGMEILAQKPRIRSTVTDVDALRSLPKDSFGYAYTQFMDAHGFEADGRAHVRFVDDPELAYVLQRYRELHDFWHVLFGLPPTVFGELALKYVELVQTGLPVAALSGIVGPLRLSCDERKELFTTYLPWAHQAGKQAPFLMNVYYEREYESNLEDLRARLRILVAPPV 255          
BLAST of EWM27019.1 vs. NCBI_GenBank
Match: gi|695411828|ref|XP_009525582.1| (hypothetical protein PHYSODRAFT_559076 [Phytophthora sojae] >gi|348676707|gb|EGZ16524.1| hypothetical protein PHYSODRAFT_559076 [Phytophthora sojae])

HSP 1 Score: 257.299 bits (656), Expect = 1.852e-81
Identity = 121/223 (54.26%), Postives = 159/223 (71.30%), Query Frame = 0
Query:   85 YSSHIPTSGFQKLYIAGFSAATAFRDPERGDMVAALGETTGTRALQRLRRAMSADPVGRELLAAKPDIKEDSTRPDRLRRLPEGTFGREYARFLDHHGYSPDERAAVRFVDDAELAFVMQRYRQVHDFWHVLCGLPPTVLGELALKWFEMVQTRLPIAAFSGVVGPLSLSAQERKLLKEQYIPWAVRAAVKARPLMCVWYERSFEEPLELMRKRLQIVTAPPM 307
            Y SH+PT+  QK+ ++  SA T F +P+RGDM+AALGE TG  AL+R+   M ADP+G  +LA KP I+ D    + LR LP  +FGR YA F+D HG+  D R+ VRFVDD ELA+VMQR+R+ HDFWH L  +PPTVLGE+ALK+ EM  ++LP++A S  VGPL LS++ER LL + Y+PWA RA+ KA  L CV YE  FE P++ +R+RL I  APP+
Sbjct:   53 YDSHMPTTPLQKIVLSVTSALTVFANPDRGDMLAALGEVTGRDALRRIHARMCADPMGARILAEKPVIRNDKIDMEYLRALPADSFGRHYATFMDSHGFDADGRSLVRFVDDPELAYVMQRHRESHDFWHTLFDVPPTVLGEIALKYVEMAHSQLPVSALSAFVGPLRLSSEERCLLMKVYVPWASRASKKAHSLHCVMYEEEFETPIQELRRRLNIEVAPPL 275          
BLAST of EWM27019.1 vs. NCBI_GenBank
Match: gi|1173948816|gb|OQR96904.1| (ubiquinone biosynthesis protein COQ4 [Thraustotheca clavata])

HSP 1 Score: 253.062 bits (645), Expect = 2.966e-80
Identity = 120/224 (53.57%), Postives = 159/224 (70.98%), Query Frame = 0
Query:   85 YSSHIPTSGFQKLYIAGFSAATAFRDPERGDMVAALGETTGTRALQRLRRAMSADPVGRELLAAKPDIKEDSTRPDRLRRLPEGTFGREYARFLDHHGYSPDERAAVRFVDDAELAFVMQRYRQVHDFWHVLCGLPPTVLGELALKWFEMVQTRLPIAAFSGVVGPLSLSAQERKLLKEQYIPWAVRAAVKARPLMCVWYERSFEEPLELMRKRLQIVTAPPMT 308
            Y  H+PT+  QK+ +A  +A + F +PERGDM+AALG++TG  AL+++   M +DP G ++LA KP I+   T  D LR LP+ TFG  Y +F+D HG+  D R+ VRFVDD ELA+V+QRYR++HDFWHVL GLPPTV GELALK+ E+VQT LP+   SG VGPL L+ +ERK L  +YIPWA RA  +A  LM V+YE+ ++  LE +R RL I  APP+ 
Sbjct:   27 YLHHVPTTPLQKILVAATAAVSVFANPERGDMLAALGDSTGEVALRQMHLKMCSDPTGMKILAEKPRIRSTVTDVDALRSLPKETFGYAYTQFMDAHGFEADGRSHVRFVDDPELAYVLQRYRELHDFWHVLFGLPPTVFGELALKYVELVQTGLPVCTLSGFVGPLRLNCEERKDLFSRYIPWAYRAGKEAPFLMNVYYEQEYQTKLEDLRARLNIRVAPPVN 250          
BLAST of EWM27019.1 vs. NCBI_GenBank
Match: gi|813199740|ref|XP_012209441.1| (hypothetical protein SPRG_14929 [Saprolegnia parasitica CBS 223.65] >gi|641525364|gb|KDO19829.1| hypothetical protein SPRG_14929 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 252.292 bits (643), Expect = 6.855e-80
Identity = 122/222 (54.95%), Postives = 158/222 (71.17%), Query Frame = 0
Query:   84 LYSSHIPTSGFQKLYIAGFSAATAFRDPERGDMVAALGETTGTRALQRLRRAMSADPVGRELLAAKPDIKEDSTRPDRLRRLPEGTFGREYARFLDHHGYSPDERAAVRFVDDAELAFVMQRYRQVHDFWHVLCGLPPTVLGELALKWFEMVQTRLPIAAFSGVVGPLSLSAQERKLLKEQYIPWAVRAAVKARPLMCVWYERSFEEPLELMRKRLQIVTAP 305
            L++ H+PT+  QKL +A  +A + F +PERGDM+AALG+ TG  AL+++   M +DPVG E+LA KP I+   T  D LR LP  +FG  Y +F+D HG+  D RA VRFVDDAELA+V+QRYR++HDFWHVL GLPPTV  E+ALK+ E+VQT LP+ A SG VGPL LS  ERK L   ++PWA RA  +A  L+ V+YER +E  LE +R+RL I  AP
Sbjct:   31 LHAHHVPTTPTQKLLVAATAAVSVFANPERGDMLAALGDATGEVALRQMHLKMCSDPVGMEILAQKPRIRSSVTDIDALRSLPTDSFGYAYTQFMDAHGFEADGRAHVRFVDDAELAYVLQRYRELHDFWHVLFGLPPTVFSEIALKYVELVQTGLPVCALSGFVGPLRLSCDERKELLGTFVPWAYRAGREAPCLLNVYYEREYETKLEDLRRRLNIRVAP 252          
BLAST of EWM27019.1 vs. NCBI_GenBank
Match: gi|669148706|ref|XP_008609915.1| (hypothetical protein SDRG_05946 [Saprolegnia diclina VS20] >gi|530738252|gb|EQC36494.1| hypothetical protein SDRG_05946 [Saprolegnia diclina VS20])

HSP 1 Score: 249.98 bits (637), Expect = 6.443e-79
Identity = 122/222 (54.95%), Postives = 157/222 (70.72%), Query Frame = 0
Query:   84 LYSSHIPTSGFQKLYIAGFSAATAFRDPERGDMVAALGETTGTRALQRLRRAMSADPVGRELLAAKPDIKEDSTRPDRLRRLPEGTFGREYARFLDHHGYSPDERAAVRFVDDAELAFVMQRYRQVHDFWHVLCGLPPTVLGELALKWFEMVQTRLPIAAFSGVVGPLSLSAQERKLLKEQYIPWAVRAAVKARPLMCVWYERSFEEPLELMRKRLQIVTAP 305
            L++ H+PT+  QKL +A  +A + F +PERGDM+AALG+ TG  AL+++   M +DPVG E+LA KP I+   T  D LR LP  TFG  Y +F+D HG+  D RA VRFVDD ELA+V+QRYR++HDFWHVL GLPPTV  E+ALK+ E+VQT LP+ A SG VGPL LS  ERK L   ++PWA RA  +A  L+ V+YER +E  LE +R+RL I  AP
Sbjct:   32 LHAHHVPTTPTQKLLVAATAAVSVFANPERGDMLAALGDATGEVALRQMHLKMCSDPVGMEILAQKPRIRSAVTDIDALRSLPTDTFGYAYTQFMDAHGFEADGRAHVRFVDDPELAYVLQRYRELHDFWHVLFGLPPTVFSEIALKYVELVQTGLPVCALSGFVGPLRLSCGERKELLGTFVPWAYRAGREAPCLLNVYYEREYETKLEDLRRRLNIRVAP 253          
BLAST of EWM27019.1 vs. NCBI_GenBank
Match: gi|1214694321|gb|OWZ08404.1| (Ubiquinone biosynthesis protein COQ4 [Phytophthora megakarya])

HSP 1 Score: 248.054 bits (632), Expect = 4.405e-78
Identity = 123/223 (55.16%), Postives = 159/223 (71.30%), Query Frame = 0
Query:   85 YSSHIPTSGFQKLYIAGFSAATAFRDPERGDMVAALGETTGTRALQRLRRAMSADPVGRELLAAKPDIKEDSTRPDRLRRLPEGTFGREYARFLDHHGYSPDERAAVRFVDDAELAFVMQRYRQVHDFWHVLCGLPPTVLGELALKWFEMVQTRLPIAAFSGVVGPLSLSAQERKLLKEQYIPWAVRAAVKARPLMCVWYERSFEEPLELMRKRLQIVTAPPM 307
            Y SH+PT+  QK+ ++  SA T F +PERGDM+AALGE TG  AL+R+   M ADPVG  +L  KP I+ D+   + LR LP  +FGR YA F+D HG+  D R+ VRFVDD ELA+VMQR+R+ HDFWH L  +PPTVLGE+ LK+ E+V ++LP++A S  VGPL LS++ER LL + YIPWA RA+ KA  L CV YE  FE P+E +R+RL I  APP+
Sbjct:   30 YDSHMPTTPLQKIVLSITSALTVFTNPERGDMLAALGEVTGRDALRRIHARMCADPVGTRILVEKPLIRNDNIDMEYLRTLPADSFGRHYATFMDSHGFYADGRSLVRFVDDPELAYVMQRHREAHDFWHTLFDVPPTVLGEITLKYVELVHSQLPVSALSAFVGPLRLSSEERCLLMKVYIPWATRASKKAHSLHCVMYEEEFETPMEELRQRLNIDVAPPL 252          
BLAST of EWM27019.1 vs. NCBI_GenBank
Match: gi|567976285|gb|ETL26812.1| (hypothetical protein L916_19566 [Phytophthora parasitica])

HSP 1 Score: 247.669 bits (631), Expect = 1.129e-77
Identity = 123/223 (55.16%), Postives = 159/223 (71.30%), Query Frame = 0
Query:   85 YSSHIPTSGFQKLYIAGFSAATAFRDPERGDMVAALGETTGTRALQRLRRAMSADPVGRELLAAKPDIKEDSTRPDRLRRLPEGTFGREYARFLDHHGYSPDERAAVRFVDDAELAFVMQRYRQVHDFWHVLCGLPPTVLGELALKWFEMVQTRLPIAAFSGVVGPLSLSAQERKLLKEQYIPWAVRAAVKARPLMCVWYERSFEEPLELMRKRLQIVTAPPM 307
            Y SH+PT+  QKL ++  SA T F +PERGDM+AALGE TG  AL+R+   M ADPVG  +LA KP I+ ++   D LR LP  +FGR YA F+D HG+  D R+ VRFVDD ELA+VMQR+R+ HDFWH L  +PPTVLGE+ALK+ EM  ++LP++A S  VGPL L+++ER LL + Y+PWA RA+  A  L CV YE  FE P+E +R+RL I  APP+
Sbjct:   52 YESHMPTTPLQKLALSVTSALTVFANPERGDMLAALGEVTGRDALRRIHARMCADPVGARILAEKPVIRNENIDMDYLRALPAESFGRHYATFMDSHGFDADGRSLVRFVDDPELAYVMQRHRESHDFWHTLFNVPPTVLGEIALKYVEMAHSKLPVSALSAFVGPLRLTSEERCLLMKVYVPWANRASKNAHSLHCVMYEEEFETPIEELRQRLNIEVAPPL 274          
BLAST of EWM27019.1 vs. NCBI_GenBank
Match: gi|1001614018|gb|KXS17770.1| (Coq4-domain-containing protein [Gonapodya prolifera JEL478])

HSP 1 Score: 245.358 bits (625), Expect = 6.830e-77
Identity = 124/231 (53.68%), Postives = 153/231 (66.23%), Query Frame = 0
Query:   77 PAVPETPLYSSHIPTSGFQKLYIAGFSAATAFRDPERGDMVAALGETTGTRALQRLRRAMSADPVGRELLAAKPDIKEDSTRPDRLRRLPEGTFGREYARFLDHHGYSPDERAAVRFVDDAELAFVMQRYRQVHDFWHVLCGLPPTVLGELALKWFEMVQTRLPIAAFSGVVGPLSLSAQERKLLKEQYIPWAVRAAVKARPLMCVWYERSFEEPLELMRKRLQIVTAPPM 307
            P  P TP Y SHIP+S  QKL IA  SA TA   P R DMVAALGETTG  AL R+R  M AD VGR +L  KP +   +   D LR+LP GTFGREY R+LD  G  PD R  V++VDDA LA+VMQRYRQVHDFWHV+ G+  +V  ELA+KW+E     +P+A  SGV GPL L+AQ+R+ L   Y+PWA+R A + +  M V+YE  +E PLE +RK L +   P +
Sbjct:   50 PLNPYTPKYQSHIPSSSIQKLVIAVGSAFTALAVPTRADMVAALGETTGPYALGRIRDKMMADAVGRRILREKPVVDSATVDLDALRQLPNGTFGREYVRWLDAEGVGPDSREPVKYVDDAVLAYVMQRYRQVHDFWHVVTGMSVSVEAELAVKWWEFAHHGMPVALLSGVFGPLRLTAQQRERLLTVYVPWALRNAGRGKYPMNVYYEEKWEMPLEELRKELGVEAVPAL 280          
The following BLAST results are available for this feature:
BLAST of EWM27019.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109190|gb|EWM27019.1|0.000e+0100.00ubiquinone biosynthesis protein coq4 mitochondrial... [more]
gi|301101922|ref|XP_002900049.1|3.852e-8456.05ubiquinone biosynthesis protein COQ4 [Phytophthora... [more]
gi|1173937775|gb|OQR88422.1|2.636e-8254.91ubiquinone biosynthesis protein COQ4 [Achlya hypog... [more]
gi|695411828|ref|XP_009525582.1|1.852e-8154.26hypothetical protein PHYSODRAFT_559076 [Phytophtho... [more]
gi|1173948816|gb|OQR96904.1|2.966e-8053.57ubiquinone biosynthesis protein COQ4 [Thraustothec... [more]
gi|813199740|ref|XP_012209441.1|6.855e-8054.95hypothetical protein SPRG_14929 [Saprolegnia paras... [more]
gi|669148706|ref|XP_008609915.1|6.443e-7954.95hypothetical protein SDRG_05946 [Saprolegnia dicli... [more]
gi|1214694321|gb|OWZ08404.1|4.405e-7855.16Ubiquinone biosynthesis protein COQ4 [Phytophthora... [more]
gi|567976285|gb|ETL26812.1|1.129e-7755.16hypothetical protein L916_19566 [Phytophthora para... [more]
gi|1001614018|gb|KXS17770.1|6.830e-7753.68Coq4-domain-containing protein [Gonapodya prolifer... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3667rna3667Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications