EWM27023.1, cds3647 (CDS) Nannochloropsis gaditana

Overview
NameEWM27023.1
Unique Namecds3647
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:899314..899325 -
Alignment locationCM002461.1:898569..898946 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27023.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100309g7.7057.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:899314..899325 -
CM002461.1supercontigCM002461.1:898569..898946 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR012336Thioredoxin-like_fold
Homology
BLAST of EWM27023.1 vs. NCBI_GenBank
Match: gi|585109195|gb|EWM27023.1| (hypothetical protein Naga_100309g7 [Nannochloropsis gaditana])

HSP 1 Score: 269.24 bits (687), Expect = 1.920e-91
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0
Query:    1 MHNKVLLLVSSLTSDAVQEKEQRRARSLLEAKGTVFEEIDGADPLMTEKRNQLFGLGHTARYPQFFIEREDGKVTYVGGWEEVEAMNECSDMPVEVLRANPQIQTFDMVFAHVQRRKRSSVAAVPVASS 129
            MHNKVLLLVSSLTSDAVQEKEQRRARSLLEAKGTVFEEIDGADPLMTEKRNQLFGLGHTARYPQFFIEREDGKVTYVGGWEEVEAMNECSDMPVEVLRANPQIQTFDMVFAHVQRRKRSSVAAVPVASS
Sbjct:    1 MHNKVLLLVSSLTSDAVQEKEQRRARSLLEAKGTVFEEIDGADPLMTEKRNQLFGLGHTARYPQFFIEREDGKVTYVGGWEEVEAMNECSDMPVEVLRANPQIQTFDMVFAHVQRRKRSSVAAVPVASS 129          
BLAST of EWM27023.1 vs. NCBI_GenBank
Match: gi|219112055|ref|XP_002177779.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410664|gb|EEC50593.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 91.2781 bits (225), Expect = 2.780e-21
Identity = 48/110 (43.64%), Postives = 69/110 (62.73%), Query Frame = 0
Query:    4 KVLLLVSSLTSDAVQEKEQRRARSLLEAKGTVFEEIDGADPLMTEKRNQLFGL-GHTARYPQFF-IEREDGKVTYVGGWEEVEAMNECSDMPVEVLRANPQIQTFDMVFA 111
            +VL+LVS+   +  Q + Q RA SLL A+G  FE +DGADP   E R++LF + G  A YPQFF ++  D    ++G WE+VEA+N+ S +P  +L +NP I T+  V  
Sbjct:    8 QVLVLVSNTNFNRGQVQNQNRAVSLLNARGISFETLDGADPTNKELRDKLFEISGVRANYPQFFLVDGSDNIPRFLGDWEKVEALNDASSLPDHILESNPSIVTWQNVLG 117          
BLAST of EWM27023.1 vs. NCBI_GenBank
Match: gi|298709089|emb|CBJ31037.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 87.0409 bits (214), Expect = 1.067e-19
Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 0
Query:   35 VFEEIDGADPLMTEKRNQLFGL-GHTARYPQFFIEREDGKVTYVGGWEEVEAMNECSDMPVEVLRANPQIQTFDMVFAHV 113
             +EE+DG+D    E RN L+ + GH  +YPQ FIER DG++ +VG W +VE++NEC  +P E+L ANP+I+TF  VF  +
Sbjct:   11 TYEEVDGSDAATQEARNNLWTVSGHRGKYPQVFIER-DGELEFVGLWSDVESLNECEALPPEILEANPEIKTFKAVFGDL 89          
BLAST of EWM27023.1 vs. NCBI_GenBank
Match: gi|1210515066|dbj|GAX26029.1| (hypothetical protein FisN_4Hu473 [Fistulifera solaris])

HSP 1 Score: 85.8853 bits (211), Expect = 2.271e-19
Identity = 43/105 (40.95%), Postives = 66/105 (62.86%), Query Frame = 0
Query:    7 LLVSSLTSDAVQEKEQRRARSLLEAKGTVFEEIDGADPLMTEKRNQLFGL-GHTARYPQFFIEREDGKVTYVGGWEEVEAMNECSDMPVEVLRANPQIQTFDMVF 110
            +L++ L  +  Q + Q RA  LLE +G  +E IDGADP   E RN+LF + G    YPQFF+  E+  V +VG ++ +EAMN+ S +P E+L  +P+I T++ + 
Sbjct:    1 MLMTGLGMNRAQRQNQERAMHLLEGRGIPYETIDGADPENRETRNKLFSISGRRGTYPQFFLLGEE-SVEFVGDFDTIEAMNDASALPCEILERHPEIMTWEKIL 104          
BLAST of EWM27023.1 vs. NCBI_GenBank
Match: gi|223993077|ref|XP_002286222.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977537|gb|EED95863.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 85.5001 bits (210), Expect = 5.818e-19
Identity = 42/111 (37.84%), Postives = 68/111 (61.26%), Query Frame = 0
Query:    4 KVLLLVSSLTSDAVQEKEQRRARSLLEAKGTVFEEIDGADPLMTEKRNQLFGL-GHTARYPQFFIEREDGKVTYVGGWEEVEAMNECSDMPVEVLRANPQIQTFDMVFAHV 113
            K+++LVS+   D  Q   Q +A+S   ++      +DG D    EKRN+LF + G    YPQFF E ++G +++ G +E++E +NE S +P EVL  +P+I+T++ VF  V
Sbjct:    6 KLIVLVSNGCHDRTQSSNQEKAQSWFLSRKVPMIIVDGMDANQREKRNELFEISGIRGNYPQFFFEDKEGSISFFGSFEKIEQLNETSGLPAEVLAQHPEIETWEKVFGSV 116          
BLAST of EWM27023.1 vs. NCBI_GenBank
Match: gi|1173944442|gb|OQR93177.1| (hypothetical protein THRCLA_22332 [Thraustotheca clavata])

HSP 1 Score: 76.2554 bits (186), Expect = 2.299e-15
Identity = 44/117 (37.61%), Postives = 68/117 (58.12%), Query Frame = 0
Query:    1 MHNKVLLLVSSLTSDAVQEKEQRRARSLLEAKGTVFEEIDGADPLMTEKRNQLFGL-GHTARYPQFFIEREDGKV-TYVGGWEEVEAMNECSDMPVEVLRANPQIQTFDMVFAHVQR 115
            M  K ++LVS  +  A  +       +LL+AK    +E+DG+     E+RNQLF + G    YPQ F++ ED     ++G +E ++ MNE +D+P E+++ N  I TFD VFA V+R
Sbjct:    1 MTKKCIVLVSHQSFSAENKSNTSSLNALLDAKKIKRDEVDGSAEHNVERRNQLFNISGVRGTYPQVFLQDEDESTPQFIGFFEAIQDMNEMNDLPAELVQQN-NILTFDAVFADVER 116          
BLAST of EWM27023.1 vs. NCBI_GenBank
Match: gi|675205725|ref|XP_008911747.1| (hypothetical protein, variant 3 [Phytophthora parasitica INRA-310] >gi|675205727|ref|XP_008911748.1| hypothetical protein, variant 4 [Phytophthora parasitica INRA-310] >gi|566014542|gb|ETI37453.1| hypothetical protein, variant 3 [Phytophthora parasitica P1569] >gi|566014543|gb|ETI37454.1| hypothetical protein, variant 4 [Phytophthora parasitica P1569] >gi|567951992|gb|ETK77676.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|567951993|gb|ETK77677.1| hypothetical protein, variant 4 [Phytophthora parasitica] >gi|567980669|gb|ETL31122.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|567980670|gb|ETL31123.1| hypothetical protein, variant 4 [Phytophthora parasitica] >gi|568010185|gb|ETL84375.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|568010186|gb|ETL84376.1| hypothetical protein, variant 4 [Phytophthora parasitica] >gi|568040078|gb|ETM37545.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|568040079|gb|ETM37546.1| hypothetical protein, variant 4 [Phytophthora parasitica] >gi|568088341|gb|ETN03203.1| hypothetical protein, variant 3 [Phytophthora parasitica INRA-310] >gi|568088342|gb|ETN03204.1| hypothetical protein, variant 4 [Phytophthora parasitica INRA-310] >gi|570318281|gb|ETO66229.1| hypothetical protein, variant 3 [Phytophthora parasitica P1976] >gi|570318282|gb|ETO66230.1| hypothetical protein, variant 4 [Phytophthora parasitica P1976] >gi|570942057|gb|ETP07314.1| hypothetical protein, variant 3 [Phytophthora parasitica CJ01A1] >gi|570942058|gb|ETP07315.1| hypothetical protein, variant 4 [Phytophthora parasitica CJ01A1] >gi|570972581|gb|ETP35387.1| hypothetical protein, variant 3 [Phytophthora parasitica P10297] >gi|570972582|gb|ETP35388.1| hypothetical protein, variant 4 [Phytophthora parasitica P10297])

HSP 1 Score: 73.1738 bits (178), Expect = 3.943e-14
Identity = 41/113 (36.28%), Postives = 68/113 (60.18%), Query Frame = 0
Query:    6 LLLVSSLTSDAVQEKEQRRARSLLEAKGTVFEEIDGADPLMTEKRNQLFGL-GHTARYPQFFIEREDGK-VTYVGGWEEVEAMNECSDMPVEVLRANPQIQTFDMVFAHVQRR 116
            ++L SS+ S A Q+ E    + LL+     + E+D +     + RN+ F + G  A YPQ F++  +GK + Y+G ++E++ +NE +D+P E+L+AN  I T + VFA V RR
Sbjct:    8 VVLTSSMVSIAEQKYEIGHLKQLLDGNKITYTEVDCSLEENRDTRNRYFEVSGIRANYPQVFLQDPEGKDIQYIGSFKEIQELNEMNDVPPEILKAN-NIPTLNTVFADVARR 119          
BLAST of EWM27023.1 vs. NCBI_GenBank
Match: gi|813168629|ref|XP_012203914.1| (hypothetical protein SPRG_09432 [Saprolegnia parasitica CBS 223.65] >gi|641531413|gb|KDO25489.1| hypothetical protein SPRG_09432 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 72.4034 bits (176), Expect = 6.846e-14
Identity = 42/115 (36.52%), Postives = 68/115 (59.13%), Query Frame = 0
Query:    4 KVLLLVSSLTSDAVQEKEQRRARSLLEAKGTVFEEIDGADPLMTEKRNQLFGL-GHTARYPQFFIEREDGKVT--YVGGWEEVEAMNECSDMPVEVLRANPQIQTFDMVFAHVQR 115
            K ++LVS+ +  A  +       +LL+AK    +E+DG+   M ++RN LFG+ G    YPQ F+  E G+ T  ++G ++ +  MNE +D+P +++  N  I TFD VFA V+R
Sbjct:    3 KCIVLVSNQSFSAENKSNTASLNALLDAKKIKRDEVDGSAEDMVDRRNALFGISGVRGSYPQVFLVDE-GETTPRFIGLFDAIHDMNEMNDLPTDIIEQN-NILTFDAVFADVER 115          
BLAST of EWM27023.1 vs. NCBI_GenBank
Match: gi|1173929349|gb|OQR82592.1| (hypothetical protein ACHHYP_15754 [Achlya hypogyna])

HSP 1 Score: 71.2478 bits (173), Expect = 1.624e-13
Identity = 43/115 (37.39%), Postives = 68/115 (59.13%), Query Frame = 0
Query:    4 KVLLLVSSLTSDAVQEKEQRRARSLLEAKGTVFEEIDGADPLMTEKRNQLFGL-GHTARYPQFFIEREDGKVT--YVGGWEEVEAMNECSDMPVEVLRANPQIQTFDMVFAHVQR 115
            K ++LVS+ +  A  +       +LL AK    EE+DG+     ++RN LFG+ G    YPQ F++ E G+ T  ++G ++ ++ MNE +D+P E++  N  I TFD VFA V+R
Sbjct:    3 KCIVLVSNQSFSAENKSNTASLVALLNAKKIKREEVDGSAEDQVDRRNALFGISGVRGTYPQVFLQDE-GEATPRFIGLFDAIQDMNEMNDLPKEIIEQN-NILTFDTVFADVER 115          
BLAST of EWM27023.1 vs. NCBI_GenBank
Match: gi|1032148671|gb|OAO12866.1| (hypothetical protein AV274_5466 [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 69.3218 bits (168), Expect = 1.018e-12
Identity = 38/109 (34.86%), Postives = 56/109 (51.38%), Query Frame = 0
Query:    6 LLLVSSLTSDAVQEKEQRRARSLLEAKGTVFEEIDGADPLMTEKRNQLFGL----GHTARYPQFFIEREDGKVTYVGGWEEVEAMNECSDMPVEVLRANPQIQTFDMVF 110
            +LL SSL  D +        ++ L+ K  +FE+IDGA P     RN LF L    G T  YP  F+ +ED  +TY+G W+ ++   +   +    L A+P+I TF   F
Sbjct:    7 ILLYSSL--DVMHSSNVLVLKAFLKQKNIIFEDIDGALPENKNIRNVLFDLAVKQGGTREYPSAFVMKEDKSITYIGNWDRIQEYLDTESIDKATLAAHPEIVTFSSFF 113          
The following BLAST results are available for this feature:
BLAST of EWM27023.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109195|gb|EWM27023.1|1.920e-91100.00hypothetical protein Naga_100309g7 [Nannochloropsi... [more]
gi|219112055|ref|XP_002177779.1|2.780e-2143.64predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|298709089|emb|CBJ31037.1|1.067e-1948.75conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210515066|dbj|GAX26029.1|2.271e-1940.95hypothetical protein FisN_4Hu473 [Fistulifera sola... [more]
gi|223993077|ref|XP_002286222.1|5.818e-1937.84predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1173944442|gb|OQR93177.1|2.299e-1537.61hypothetical protein THRCLA_22332 [Thraustotheca c... [more]
gi|675205725|ref|XP_008911747.1|3.943e-1436.28hypothetical protein, variant 3 [Phytophthora para... [more]
gi|813168629|ref|XP_012203914.1|6.846e-1436.52hypothetical protein SPRG_09432 [Saprolegnia paras... [more]
gi|1173929349|gb|OQR82592.1|1.624e-1337.39hypothetical protein ACHHYP_15754 [Achlya hypogyna... [more]
gi|1032148671|gb|OAO12866.1|1.018e-1234.86hypothetical protein AV274_5466 [Blastocystis sp. ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3656rna3656Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications