EWM27028.1, cds3645 (CDS) Nannochloropsis gaditana

Overview
NameEWM27028.1
Unique Namecds3645
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:896030..896583 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27028.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_102377g1.2.mrna
GbkeyCDS
End range.
End range896583
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:896030..896583 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM27028.1 vs. NCBI_GenBank
Match: gi|585109201|gb|EWM27028.1| (hypothetical protein Naga_102377g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 358.221 bits (918), Expect = 7.770e-125
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0 
Query:    1 MAISRMEIPADGAKHLPEASSTIASLFQTCASPSIATPPVSFPATLPASSSSLSPALASSRTCTFFQTAFLPSSPAQDAAKSLVCTLSDQISGPVNELFHTAHPHTLQYSATADPSSTLLSTPLPLAVPQQVPDTLTSKDQSPGRHQTSFALAGHPESMELSTTLTKLFDTARPATVLSSSGAAR 185
            MAISRMEIPADGAKHLPEASSTIASLFQTCASPSIATPPVSFPATLPASSSSLSPALASSRTCTFFQTAFLPSSPAQDAAKSLVCTLSDQISGPVNELFHTAHPHTLQYSATADPSSTLLSTPLPLAVPQQVPDTLTSKDQSPGRHQTSFALAGHPESMELSTTLTKLFDTARPATVLSSSGAAR
Sbjct:    1 MAISRMEIPADGAKHLPEASSTIASLFQTCASPSIATPPVSFPATLPASSSSLSPALASSRTCTFFQTAFLPSSPAQDAAKSLVCTLSDQISGPVNELFHTAHPHTLQYSATADPSSTLLSTPLPLAVPQQVPDTLTSKDQSPGRHQTSFALAGHPESMELSTTLTKLFDTARPATVLSSSGAAR 185
[Close]
BLAST of EWM27028.1 vs. NCBI_GenBank
Match: gi|553184427|ref|XP_005854087.1| (hypothetical protein NGA_0451510 [Nannochloropsis gaditana CCMP526] >gi|422294973|gb|EKU22272.1| hypothetical protein NGA_0451510 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 356.681 bits (914), Expect = 1.066e-110
Identity = 181/185 (97.84%), Postives = 181/185 (97.84%), Query Frame = 0 
Query:    1 MAISRMEIPADGAKHLPEASSTIASLFQTCASPSIATPPVSFPATLPASSSSLSPALASSRTCTFFQTAFLPSSPAQDAAKSLVCTLSDQISGPVNELFHTAHPHTLQYSATADPSSTLLSTPLPLAVPQQVPDTLTSKDQSPGRHQTSFALAGHPESMELSTTLTKLFDTARPATVLSSSGAAR 185
            MAISRMEIPADGAKHLPEASSTIASLFQTCASPSIATPPVSFPATLPASSSSLSPALASSRTCTFFQTAFLPSSPAQDAAKSLVCTLSDQISGPVNE FHTAHPHTLQYSATADPSSTLL TPLPLAVPQQVPDTLTSKDQSPGRHQTSFA AGHPESMELSTTLTKLFDTARPAT LSSSGAAR
Sbjct: 1562 MAISRMEIPADGAKHLPEASSTIASLFQTCASPSIATPPVSFPATLPASSSSLSPALASSRTCTFFQTAFLPSSPAQDAAKSLVCTLSDQISGPVNEFFHTAHPHTLQYSATADPSSTLLFTPLPLAVPQQVPDTLTSKDQSPGRHQTSFASAGHPESMELSTTLTKLFDTARPATALSSSGAAR 1746
[Close]
BLAST of EWM27028.1 vs. NCBI_GenBank
Match: gi|553178863|ref|XP_005852614.1| (hypothetical protein NGA_0451520, partial [Nannochloropsis gaditana CCMP526] >gi|422295919|gb|EKU23218.1| hypothetical protein NGA_0451520, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 323.939 bits (829), Expect = 2.012e-99
Identity = 164/167 (98.20%), Postives = 164/167 (98.20%), Query Frame = 0 
Query:    1 MAISRMEIPADGAKHLPEASSTIASLFQTCASPSIATPPVSFPATLPASSSSLSPALASSRTCTFFQTAFLPSSPAQDAAKSLVCTLSDQISGPVNELFHTAHPHTLQYSATADPSSTLLSTPLPLAVPQQVPDTLTSKDQSPGRHQTSFALAGHPESMELSTTLTK 167
            MAISRMEIPADGAKHLPEASSTIASLFQTCASPSIATPPVSFPATLPASSSSLSPALASSRTCTFFQTAFLPSSPAQDAAKSLVCTLSDQISGPVNE FHTAHPHTLQYSATADPSSTLL TPLPLAVPQQVPDTLTSKDQSPGRHQTSFA AGHPESMELSTTLTK
Sbjct: 1446 MAISRMEIPADGAKHLPEASSTIASLFQTCASPSIATPPVSFPATLPASSSSLSPALASSRTCTFFQTAFLPSSPAQDAAKSLVCTLSDQISGPVNEFFHTAHPHTLQYSATADPSSTLLFTPLPLAVPQQVPDTLTSKDQSPGRHQTSFASAGHPESMELSTTLTK 1612
The following BLAST results are available for this feature:
BLAST of EWM27028.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585109201|gb|EWM27028.1|7.770e-125100.00hypothetical protein Naga_102377g1, partial [Nanno... [more]
gi|553184427|ref|XP_005854087.1|1.066e-11097.84hypothetical protein NGA_0451510 [Nannochloropsis ... [more]
gi|553178863|ref|XP_005852614.1|2.012e-9998.20hypothetical protein NGA_0451520, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3654rna3654Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications