EWM27036.1, cds3631 (CDS) Nannochloropsis gaditana

Overview
NameEWM27036.1
Unique Namecds3631
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:864927..865016 +
Alignment locationCM002461.1:865109..865572 +
Alignment locationCM002461.1:865683..866026 +
Alignment locationCM002461.1:866078..866220 +

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Properties
Property NameValue
Protein idEWM27036.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100056g16.10449.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:864927..865016 +
CM002461.1supercontigCM002461.1:865109..865572 +
CM002461.1supercontigCM002461.1:865683..866026 +
CM002461.1supercontigCM002461.1:866078..866220 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM27036.1 vs. NCBI_GenBank
Match: gi|585109210|gb|EWM27036.1| (hypothetical protein Naga_100056g16 [Nannochloropsis gaditana])

HSP 1 Score: 706.442 bits (1822), Expect = 0.000e+0
Identity = 346/346 (100.00%), Postives = 346/346 (100.00%), Query Frame = 0 
Query:    1 MQPSTPREPHRLSASWIIIDGEGEEVTLDRRNQHNGLSLREEDGGDGTFTVLTLHPDGGALRSEDERRDGPLLDSSLNLNDGRMIELPTMLEEEGADGMYPSDGARREASPRRDTPRQGGREQEEEEEEEEQQQQQQQQQEEARVSPRASSRAEGPSQPPTDERSENGGDGWRKRATSVVMAHFRAILKSFSHRASYCGTGAGYSIEDKLRMACPYLRRQSRQRLLLITTTIPVAVIVGVTAAIVLVSVCVSSTHPSSIPSSFSSSSSSSSSSSFSESEARGNRARAVPGLEASPVLANWTEKAIIDKEVARVAGCVYGKHVASTEMKSTFHITLTDIGFHYVVER 346
            MQPSTPREPHRLSASWIIIDGEGEEVTLDRRNQHNGLSLREEDGGDGTFTVLTLHPDGGALRSEDERRDGPLLDSSLNLNDGRMIELPTMLEEEGADGMYPSDGARREASPRRDTPRQGGREQEEEEEEEEQQQQQQQQQEEARVSPRASSRAEGPSQPPTDERSENGGDGWRKRATSVVMAHFRAILKSFSHRASYCGTGAGYSIEDKLRMACPYLRRQSRQRLLLITTTIPVAVIVGVTAAIVLVSVCVSSTHPSSIPSSFSSSSSSSSSSSFSESEARGNRARAVPGLEASPVLANWTEKAIIDKEVARVAGCVYGKHVASTEMKSTFHITLTDIGFHYVVER
Sbjct:    1 MQPSTPREPHRLSASWIIIDGEGEEVTLDRRNQHNGLSLREEDGGDGTFTVLTLHPDGGALRSEDERRDGPLLDSSLNLNDGRMIELPTMLEEEGADGMYPSDGARREASPRRDTPRQGGREQEEEEEEEEQQQQQQQQQEEARVSPRASSRAEGPSQPPTDERSENGGDGWRKRATSVVMAHFRAILKSFSHRASYCGTGAGYSIEDKLRMACPYLRRQSRQRLLLITTTIPVAVIVGVTAAIVLVSVCVSSTHPSSIPSSFSSSSSSSSSSSFSESEARGNRARAVPGLEASPVLANWTEKAIIDKEVARVAGCVYGKHVASTEMKSTFHITLTDIGFHYVVER 346
[Close]
BLAST of EWM27036.1 vs. NCBI_GenBank
Match: gi|553178904|ref|XP_005852619.1| (hypothetical protein NGA_0730600 [Nannochloropsis gaditana CCMP526] >gi|422295915|gb|EKU23214.1| hypothetical protein NGA_0730600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 475.707 bits (1223), Expect = 8.769e-168
Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0 
Query:    1 MQPSTPREPHRLSASWIIIDGEGEEVTLDRRNQHNGLSLREEDGGDGTFTVLTLHPDGGALRSEDERRDGPLLDSSLNLNDGRMIELPTMLEEEGADGMYPSDGARREASPRRDTPRQGGREQEEEEEEEEQQQQQQQQQEEARVSPRASSRAEGPSQPPTDERSENGGDGWRKRATSVVMAHFRAILKSFSHRASYCGTGAGYSIEDKLRMACPYLRRQSRQRLLLITTTIP 233
            MQPSTPREPHRLSASWIIIDGEGEEVTLDRRNQHNGLSLREEDGGDGTFTVLTLHPDGGALRSEDERRDGPLLDSSLNLNDGRMIELPTMLEEEGADGMYPSDGARREASPRRDTPRQGGREQEEEEEEEE+QQQQQQQQEEARVSPRASSRAEGPSQPPTDERSENGGDGWRKRATSVVMAHFRAILKSFSHRASYCGTGAGYSIEDKLRMACPYLRRQSRQRLLLITTTIP
Sbjct:    1 MQPSTPREPHRLSASWIIIDGEGEEVTLDRRNQHNGLSLREEDGGDGTFTVLTLHPDGGALRSEDERRDGPLLDSSLNLNDGRMIELPTMLEEEGADGMYPSDGARREASPRRDTPRQGGREQEEEEEEEEEQQQQQQQQEEARVSPRASSRAEGPSQPPTDERSENGGDGWRKRATSVVMAHFRAILKSFSHRASYCGTGAGYSIEDKLRMACPYLRRQSRQRLLLITTTIP 233
The following BLAST results are available for this feature:
BLAST of EWM27036.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585109210|gb|EWM27036.1|0.000e+0100.00hypothetical protein Naga_100056g16 [Nannochlorops... [more]
gi|553178904|ref|XP_005852619.1|8.769e-16899.57hypothetical protein NGA_0730600 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3640rna3640Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications