EWM27045.1, cds3622 (CDS) Nannochloropsis gaditana

Overview
NameEWM27045.1
Unique Namecds3622
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:847458..847489 -
Alignment locationCM002461.1:846835..847300 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27045.1
Productcell growth defect factor -2
Orig transcript idgnl|cribi|Naga_100056g26.10458.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:847458..847489 -
CM002461.1supercontigCM002461.1:846835..847300 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM27045.1 vs. NCBI_GenBank
Match: gi|585109219|gb|EWM27045.1| (cell growth defect factor -2 [Nannochloropsis gaditana])

HSP 1 Score: 338.576 bits (867), Expect = 1.086e-117
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
Query:    1 MADAYCRHAASLIAGALGAMASVFGKWGLDPEAMKQLLHKTRIEPVLSSPPMLLLARSACVGMMLLCNIAMTSFFVRSLHQSGSLLATVINTSINFVATGLAGHIFFKEALSLLWWSGAVVTLAGVVLLGSCSPTGATRKKGAEKMEESYVQEMKPRYQLRKRTR 165
            MADAYCRHAASLIAGALGAMASVFGKWGLDPEAMKQLLHKTRIEPVLSSPPMLLLARSACVGMMLLCNIAMTSFFVRSLHQSGSLLATVINTSINFVATGLAGHIFFKEALSLLWWSGAVVTLAGVVLLGSCSPTGATRKKGAEKMEESYVQEMKPRYQLRKRTR
Sbjct:    1 MADAYCRHAASLIAGALGAMASVFGKWGLDPEAMKQLLHKTRIEPVLSSPPMLLLARSACVGMMLLCNIAMTSFFVRSLHQSGSLLATVINTSINFVATGLAGHIFFKEALSLLWWSGAVVTLAGVVLLGSCSPTGATRKKGAEKMEESYVQEMKPRYQLRKRTR 165          
BLAST of EWM27045.1 vs. NCBI_GenBank
Match: gi|1032641537|gb|OAQ22927.1| (hypothetical protein K457DRAFT_119071 [Mortierella elongata AG-77])

HSP 1 Score: 84.3445 bits (207), Expect = 2.153e-17
Identity = 47/146 (32.19%), Postives = 78/146 (53.42%), Query Frame = 0
Query:   11 SLIAGALGAMASVFGKWGLDPEAMKQLLHKTRIEPVLSSP--------------PMLLLARSACVGMMLLCNIAMTSFFVRSLHQS-GSLLATVINTSINFVATGLAGHIFFKEALSLLWWSGAVVTLAGVVLLGSCSPTGATRKK 141
            +++AG   A+ASVF K  LD   ++ L +        ++P              P+++  RS C  ++ +CN AM + F ++L++S  S   TVIN++ NF  T + G++ F E L+L WW GA + + G VL+ S     A++KK
Sbjct:   33 AILAGTFAALASVFAKLTLDARTVEFLQYACNAVLAPTTPYCTSFFIAKEGETSPVVVAVRSTCFALIFICNAAMWTLFTKALNRSKSSATVTVINSAANFCITAVLGYVLFSEPLALQWWFGASLIVVGSVLVSSDEANAASKKK 178          
BLAST of EWM27045.1 vs. NCBI_GenBank
Match: gi|470391124|ref|XP_004334639.1| (hypothetical protein ACA1_091360 [Acanthamoeba castellanii str. Neff] >gi|440791388|gb|ELR12626.1| hypothetical protein ACA1_091360 [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 78.9518 bits (193), Expect = 2.098e-15
Identity = 47/144 (32.64%), Postives = 75/144 (52.08%), Query Frame = 0
Query:    4 AYCRHAASLIAGALGAMASVFGKWGLDPEAMKQLL---HKTRIEPVLSSPPMLLLARSACVGMMLLCNIAMTSFF-VRSLHQSGSLLATVINTSINFVATGLAGHIFFKEALSLLWWSGAVVTLAGVVLLGSCSPTGATRKKGA 143
            A+     S +AG    +ASVFGK  +D   + + +   H T     +         R+AC GM+ +CN+ M +FF V+S++ S S+ ATV+N++ NF ++ L GH+ F E L   WW G+   +AG+  L     + +T    A
Sbjct:   11 AWWGFVLSTLAGTCAGLASVFGKLAMDGVWILRFVEFCHSTTTMTTVVDEYAGAALRAACFGMVFVCNMIMWNFFFVKSMNLSSSVTATVVNSATNFFSSALLGHLLFSEPLPAAWWLGSAFIIAGLFFLARGDTSTSTTDDVA 154          
BLAST of EWM27045.1 vs. NCBI_GenBank
Match: gi|298714862|emb|CBJ25761.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 78.9518 bits (193), Expect = 2.807e-15
Identity = 52/138 (37.68%), Postives = 73/138 (52.90%), Query Frame = 0
Query:    7 RHAASLIAGALGAMASVFGKWGLDPEAMKQLLHKTRIEPVLSSPPMLL------LARSACVGMMLLCNIAMTSFFVRSLHQSGSLLATVINTSINFVATGLAGHIFFKEALSLLWWSGAVVTLAGVVLL-GSCSPTGA 137
             H  S+ +GAL   ASV GK   D +   Q+   +  E     P + L      L + A +  M + N  M S F+++L  SGS +ATV N S NFV +G++G + F E L  LW+ GA + ++GVVLL G  SP G 
Sbjct:   15 NHGYSVASGALACFASVLGKVAFDGDTPFQVQATSACEEHF--PELALCNTVGRLVQGASLAGMFMVNAVMLSTFLKALQMSGSTVATVTNFSTNFVLSGISGRMVFGERLPALWFFGASLVVSGVVLLTGGSSPEGG 150          
BLAST of EWM27045.1 vs. NCBI_GenBank
Match: gi|924881369|gb|KOS37675.1| (hypothetical protein ACN38_g11527 [Penicillium nordicum])

HSP 1 Score: 75.485 bits (184), Expect = 2.154e-14
Identity = 47/124 (37.90%), Postives = 71/124 (57.26%), Query Frame = 0
Query:   11 SLIAGALGAMASVFGKWGLDPEAM---KQLLHKTRIEPVLSSPPMLLLARSACVGMMLLCNIAMTSFFVRSLHQSGSLL-ATVINTSINFVATGLAGHIFFKEALSLLWWSGAVVTLAGVVLLG 130
            ++ +GA  A+  VF K   D       + L H   +E   SSP + +L R AC+G+ +LCNI M + F R+L    S +  ++ NT+ NF+AT + G I F+EA+  LWW GA +  AG +L+G
Sbjct:   21 AITSGAFAALNGVFAKLTTDDHTTAFAQSLAHVFGLE---SSPVIEMLTRGACLGLNVLCNIIMWALFTRALTAGPSTVKVSITNTASNFLATAVFGMIVFQEAVGGLWWLGAAMMGAGCILVG 141          
BLAST of EWM27045.1 vs. NCBI_GenBank
Match: gi|1168093449|gb|OQD93975.1| (hypothetical protein PENSOL_c029G00308 [Penicillium solitum])

HSP 1 Score: 75.485 bits (184), Expect = 2.371e-14
Identity = 47/124 (37.90%), Postives = 71/124 (57.26%), Query Frame = 0
Query:   11 SLIAGALGAMASVFGKWGLDPEAM---KQLLHKTRIEPVLSSPPMLLLARSACVGMMLLCNIAMTSFFVRSLHQSGSLL-ATVINTSINFVATGLAGHIFFKEALSLLWWSGAVVTLAGVVLLG 130
            ++ +GA  A+  VF K   D       + L H   +E   SSP + +L R AC+G+ +LCNI M + F R+L    S +  ++ NT+ NF+AT + G I F+EA+  LWW GA +  AG +L+G
Sbjct:   21 AITSGAFAALNGVFAKLTTDDHTTAFAQSLAHLFGLE---SSPVIEMLTRGACLGLNVLCNIIMWALFTRALTAGPSTVKVSITNTASNFLATAVFGMIVFQEAVGGLWWLGAAMMGAGCILVG 141          
BLAST of EWM27045.1 vs. NCBI_GenBank
Match: gi|584417335|emb|CDM29045.1| (Drug/metabolite transporter [Penicillium roqueforti FM164])

HSP 1 Score: 75.0998 bits (183), Expect = 3.518e-14
Identity = 47/124 (37.90%), Postives = 71/124 (57.26%), Query Frame = 0
Query:   11 SLIAGALGAMASVFGKWGLDPEAM---KQLLHKTRIEPVLSSPPMLLLARSACVGMMLLCNIAMTSFFVRSLHQSGSLL-ATVINTSINFVATGLAGHIFFKEALSLLWWSGAVVTLAGVVLLG 130
            ++ +GA  A+  VF K   D       + L H   +E   SSP + +L R AC+G+ +LCNI M + F R+L    S +  ++ NT+ NF+AT L G + F+EA+  LWW GA +  AG +L+G
Sbjct:   21 AITSGAFAALNGVFAKLTTDDHTTAFAQSLAHLFGLE---SSPVIEMLTRGACLGLNVLCNIIMWALFTRALTAGPSTVKVSITNTASNFLATALLGMVVFQEAVGGLWWLGAGMMGAGCILVG 141          
BLAST of EWM27045.1 vs. NCBI_GenBank
Match: gi|672818126|gb|KFH63028.1| (hypothetical protein MVEG_11065 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 75.485 bits (184), Expect = 4.056e-14
Identity = 46/132 (34.85%), Postives = 68/132 (51.52%), Query Frame = 0
Query:   13 IAGALGAMASVFGKWGLDPEAMKQLLH--KTRIEPVL------------SSPPMLLLARSACVGMMLLCNIAMTSFFVRSLHQS-GSLLATVINTSINFVATGLAGHIFFKEALSLLWWSGAVVTLAGVVLL 129
            +AG   A+ASVF K  +D   +  L     T + P               + P+    RSAC G++ +CN AM + F ++L++S  S   TVIN+S NF  T + G+  F E L+L WW GA + + G VL+
Sbjct:   32 LAGTFAALASVFAKLTMDARTVNFLRDTCNTLVAPTTPICTSMFIAKDGETSPVEFAVRSACFGLIFICNAAMWTLFTKALNRSQSSATVTVINSSANFCITAVLGYALFSEPLALQWWFGASLIVLGGVLV 163          
BLAST of EWM27045.1 vs. NCBI_GenBank
Match: gi|1168182659|gb|OQE80182.1| (hypothetical protein PENNAL_c0047G03789 [Penicillium nalgiovense])

HSP 1 Score: 74.7146 bits (182), Expect = 4.691e-14
Identity = 46/124 (37.10%), Postives = 71/124 (57.26%), Query Frame = 0
Query:   11 SLIAGALGAMASVFGKWGLDPEAM---KQLLHKTRIEPVLSSPPMLLLARSACVGMMLLCNIAMTSFFVRSLHQSGSLL-ATVINTSINFVATGLAGHIFFKEALSLLWWSGAVVTLAGVVLLG 130
            ++ +GA  A+  VF K   D       + L H   ++   SSP + +L R AC+G+ +LCN+ M + F R+L    S +  ++ NT+ NF+AT L G I F+EA+  LWW GA +  AG +L+G
Sbjct:   21 AITSGAFAALNGVFAKLTTDNHTTAFAQSLAHLFGLD---SSPVIEMLTRGACLGLNVLCNVIMWALFTRALTAGPSTVKVSITNTASNFLATALLGMIVFQEAVGGLWWLGAAMMGAGCILVG 141          
BLAST of EWM27045.1 vs. NCBI_GenBank
Match: gi|255954613|ref|XP_002568059.1| (Pc21g10240 [Penicillium rubens Wisconsin 54-1255] >gi|211589770|emb|CAP95921.1| Pc21g10240 [Penicillium rubens Wisconsin 54-1255] >gi|1021541417|gb|KZN88721.1| hypothetical protein EN45_073010 [Penicillium chrysogenum])

HSP 1 Score: 74.7146 bits (182), Expect = 4.691e-14
Identity = 44/121 (36.36%), Postives = 68/121 (56.20%), Query Frame = 0
Query:   11 SLIAGALGAMASVFGKWGLDPEAMKQLLHKTRIEPVLSSPPMLLLARSACVGMMLLCNIAMTSFFVRSLHQSGSLL-ATVINTSINFVATGLAGHIFFKEALSLLWWSGAVVTLAGVVLLG 130
            ++ +GA  A+  VF K   D            +  + SSP + +L R AC+G+ +LCN+ M + F R+L    S +  ++ NT+ NF+AT L G I F+EA+  LWW GA +  AG +L+G
Sbjct:   21 AITSGAFAALNGVFAKLTTDNHTTAFAQSLAHLFGLDSSPVIEMLTRGACLGLNVLCNVIMWALFTRALTAGPSTVKVSITNTASNFLATALFGMIVFQEAVGGLWWLGAAMMGAGCILVG 141          
The following BLAST results are available for this feature:
BLAST of EWM27045.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109219|gb|EWM27045.1|1.086e-117100.00cell growth defect factor -2 [Nannochloropsis gadi... [more]
gi|1032641537|gb|OAQ22927.1|2.153e-1732.19hypothetical protein K457DRAFT_119071 [Mortierella... [more]
gi|470391124|ref|XP_004334639.1|2.098e-1532.64hypothetical protein ACA1_091360 [Acanthamoeba cas... [more]
gi|298714862|emb|CBJ25761.1|2.807e-1537.68conserved unknown protein [Ectocarpus siliculosus][more]
gi|924881369|gb|KOS37675.1|2.154e-1437.90hypothetical protein ACN38_g11527 [Penicillium nor... [more]
gi|1168093449|gb|OQD93975.1|2.371e-1437.90hypothetical protein PENSOL_c029G00308 [Penicilliu... [more]
gi|584417335|emb|CDM29045.1|3.518e-1437.90Drug/metabolite transporter [Penicillium roquefort... [more]
gi|672818126|gb|KFH63028.1|4.056e-1434.85hypothetical protein MVEG_11065 [Mortierella verti... [more]
gi|1168182659|gb|OQE80182.1|4.691e-1437.10hypothetical protein PENNAL_c0047G03789 [Penicilli... [more]
gi|255954613|ref|XP_002568059.1|4.691e-1436.36Pc21g10240 [Penicillium rubens Wisconsin 54-1255] ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3631rna3631Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications