EWM27029.1, cds3606 (CDS) Nannochloropsis gaditana

Overview
NameEWM27029.1
Unique Namecds3606
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:816138..817209 -

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Properties
Property NameValue
Start range816138
Start range.
Protein idEWM27029.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100056g43.10442.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:816138..817209 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM27029.1 vs. NCBI_GenBank
Match: gi|585109203|gb|EWM27029.1| (hypothetical protein Naga_100056g43, partial [Nannochloropsis gaditana])

HSP 1 Score: 701.434 bits (1809), Expect = 0.000e+0
Identity = 357/357 (100.00%), Postives = 357/357 (100.00%), Query Frame = 0 
Query:    1 MAPTSTNKIEGSRAPFASTRVEGERISRLHEINGHHDHREREGTPTPALAGTPSSSLYLTPPSSGPARDYTPMSIANTAPPKPARRSSVGPGVPPFTPLHGSPPLEPSSDEAASPDTFASPPWRQAQAPPSSETGAAARKAEDVDDGSYVDEILEGVSGLGLGSLGPLQGDWLPQIAAILEQVHLKSKERDPEAPDIGGVAEYLRRLDIRKRRASLSPSPMGDSQDQTRGREGGREGGREGGREGGGMAQVHQLSPPSPVSRHAGGKPPRDQTVAASLTPRPDSGSVFTSPGPDGRERAEGGKAAAGAGTEGDKEGQGVGAEEHASHVARAPLPMPACATSSGPAANPDLSFRCLGP 357
            MAPTSTNKIEGSRAPFASTRVEGERISRLHEINGHHDHREREGTPTPALAGTPSSSLYLTPPSSGPARDYTPMSIANTAPPKPARRSSVGPGVPPFTPLHGSPPLEPSSDEAASPDTFASPPWRQAQAPPSSETGAAARKAEDVDDGSYVDEILEGVSGLGLGSLGPLQGDWLPQIAAILEQVHLKSKERDPEAPDIGGVAEYLRRLDIRKRRASLSPSPMGDSQDQTRGREGGREGGREGGREGGGMAQVHQLSPPSPVSRHAGGKPPRDQTVAASLTPRPDSGSVFTSPGPDGRERAEGGKAAAGAGTEGDKEGQGVGAEEHASHVARAPLPMPACATSSGPAANPDLSFRCLGP
Sbjct:    1 MAPTSTNKIEGSRAPFASTRVEGERISRLHEINGHHDHREREGTPTPALAGTPSSSLYLTPPSSGPARDYTPMSIANTAPPKPARRSSVGPGVPPFTPLHGSPPLEPSSDEAASPDTFASPPWRQAQAPPSSETGAAARKAEDVDDGSYVDEILEGVSGLGLGSLGPLQGDWLPQIAAILEQVHLKSKERDPEAPDIGGVAEYLRRLDIRKRRASLSPSPMGDSQDQTRGREGGREGGREGGREGGGMAQVHQLSPPSPVSRHAGGKPPRDQTVAASLTPRPDSGSVFTSPGPDGRERAEGGKAAAGAGTEGDKEGQGVGAEEHASHVARAPLPMPACATSSGPAANPDLSFRCLGP 357
[Close]
BLAST of EWM27029.1 vs. NCBI_GenBank
Match: gi|553177805|ref|XP_005852500.1| (hypothetical protein NGA_0723700, partial [Nannochloropsis gaditana CCMP526] >gi|422296034|gb|EKU23333.1| hypothetical protein NGA_0723700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 248.054 bits (632), Expect = 1.677e-79
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 
Query:   73 MSIANTAPPKPARRSSVGPGVPPFTPLHGSPPLEPSSDEAASPDTFASPPWRQAQAPPSSETGAAARKAEDVDDGSYVDEILEGVSGLGLGSLGPLQGDWLPQIAAILEQVHLKSKERDPEAPDI 197
            MSIANTAPPKPARRSSVGPGVPPFTPLHGSPPLEPSSDEAASPDTFASPPWRQAQAPPSSETGAAARKAEDVDDGSYVDEILEGVSGLGLGSLGPLQGDWLPQIAAILEQVHLKSKERDPEAPDI
Sbjct:    1 MSIANTAPPKPARRSSVGPGVPPFTPLHGSPPLEPSSDEAASPDTFASPPWRQAQAPPSSETGAAARKAEDVDDGSYVDEILEGVSGLGLGSLGPLQGDWLPQIAAILEQVHLKSKERDPEAPDI 125
The following BLAST results are available for this feature:
BLAST of EWM27029.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585109203|gb|EWM27029.1|0.000e+0100.00hypothetical protein Naga_100056g43, partial [Nann... [more]
gi|553177805|ref|XP_005852500.1|1.677e-79100.00hypothetical protein NGA_0723700, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3615rna3615Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications