EWM27081.1, cds3600 (CDS) Nannochloropsis gaditana

Overview
NameEWM27081.1
Unique Namecds3600
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:803021..803160 -
Alignment locationCM002461.1:802857..802917 -
Alignment locationCM002461.1:802490..802686 -
Alignment locationCM002461.1:801531..802269 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27081.1
ProductZn(2)-C6 fungal-type DNA-binding domain protein
Orig transcript idgnl|cribi|Naga_100194g7.7133.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:803021..803160 -
CM002461.1supercontigCM002461.1:802857..802917 -
CM002461.1supercontigCM002461.1:802490..802686 -
CM002461.1supercontigCM002461.1:801531..802269 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
BLAST of EWM27081.1 vs. NCBI_GenBank
Match: gi|585109256|gb|EWM27081.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 771.155 bits (1990), Expect = 0.000e+0
Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 0
Query:    1 MVVPLDRMQATDLKAAGAPAPAQPRRTCTACKASKVKCDRQAPVCGRCARLRLTCVQQPRAQGRPMKSKSSESEGIISPEGMIESTLATREATPARAVSSETSTQWAADYMAFTFSNLLKSGAVHRMKTFAVLRVWMLFSMYYGVDLTRGFLSVALALMDASIQDLQRLPETMASSVALPPDQPAAEAASITSSTSSSSSSSSTPVSSVDAAASAPLDPGVLQPFIASLDDGVSAVICCVGCRGGTGKVYCNDKFKSTFFSSEDLTQRTLSESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDRQGSDFLAIVRLRCLTLNNGDYGADILTVEPAPMSKYVLQTSDGAGTGQEGPGGEGGREG 378
            MVVPLDRMQATDLKAAGAPAPAQPRRTCTACKASKVKCDRQAPVCGRCARLRLTCVQQPRAQGRPMKSKSSESEGIISPEGMIESTLATREATPARAVSSETSTQWAADYMAFTFSNLLKSGAVHRMKTFAVLRVWMLFSMYYGVDLTRGFLSVALALMDASIQDLQRLPETMASSVALPPDQPAAEAASITSSTSSSSSSSSTPVSSVDAAASAPLDPGVLQPFIASLDDGVSAVICCVGCRGGTGKVYCNDKFKSTFFSSEDLTQRTLSESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDRQGSDFLAIVRLRCLTLNNGDYGADILTVEPAPMSKYVLQTSDGAGTGQEGPGGEGGREG
Sbjct:    1 MVVPLDRMQATDLKAAGAPAPAQPRRTCTACKASKVKCDRQAPVCGRCARLRLTCVQQPRAQGRPMKSKSSESEGIISPEGMIESTLATREATPARAVSSETSTQWAADYMAFTFSNLLKSGAVHRMKTFAVLRVWMLFSMYYGVDLTRGFLSVALALMDASIQDLQRLPETMASSVALPPDQPAAEAASITSSTSSSSSSSSTPVSSVDAAASAPLDPGVLQPFIASLDDGVSAVICCVGCRGGTGKVYCNDKFKSTFFSSEDLTQRTLSESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDRQGSDFLAIVRLRCLTLNNGDYGADILTVEPAPMSKYVLQTSDGAGTGQEGPGGEGGREG 378          
BLAST of EWM27081.1 vs. NCBI_GenBank
Match: gi|585106530|gb|EWM24903.1| (hypothetical protein Naga_100116g15 [Nannochloropsis gaditana])

HSP 1 Score: 113.235 bits (282), Expect = 2.218e-24
Identity = 59/144 (40.97%), Postives = 91/144 (63.19%), Query Frame = 0
Query:  226 IASLDDGVSAVICCVGCRGGTGKVYCNDKFKSTFFSSEDLTQRTLSESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDRQGSDFLAIVRLRCLTLNNGDYGADILTVEPAPMSKYVLQTSDGAGTGQEG 369
            +++LDD VSAV C V   GG  +V  ND+FK TF+S+ ++  R   E   P +++A ++A EDR +F++++T   FG  T + +++ IVKV D     FLA++RLR  TL  G Y A +L++ PAP SKY+ +  +  G G+EG
Sbjct:   96 LSALDDRVSAVACTVSLVGGACRVLVNDRFKDTFWSASEILSRLSKEVAGPPFLFAALVAVEDRLDFLEAMTAYVFGPPTQV-ELSQIVKVRDAGEQTFLAMIRLRTATLAGGAYLATMLSISPAPSSKYI-RGGNKEGAGEEG 237          
BLAST of EWM27081.1 vs. NCBI_GenBank
Match: gi|585100240|gb|EWM20546.1| (hypothetical protein Naga_100685g1 [Nannochloropsis gaditana])

HSP 1 Score: 75.485 bits (184), Expect = 4.906e-11
Identity = 66/276 (23.91%), Postives = 113/276 (40.94%), Query Frame = 0
Query:  104 TQWAADYMAFTFSNLLKSGAVHRMKTFAVLRVWMLFSMYYGVDLTRGFLSVALALMDASIQDLQRLP-ETMASSVALPPDQPAAEAASITSSTSSSSSSSSTPVSSVDAAASAPLDPGVLQPFIASLDDGVSAVICCVGCRGGTGKVYCNDKFKSTFFSSEDLTQRTLSESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDRQGSDFLAIVRLRCLTLNNGDYGADILTVE--PAPMSKYVLQTSDGAGTGQEGPGGEGGR 376
            T W  + +A  F +    G + R +    LRVW +     G D T G     L ++  + ++L R    TMA            EA  I     S+  S S  + S+              P    LDDG + ++     +G       N  F+S+FF+S ++  +  + S +  +V A  +A EDR  F ++L    FG ++    V+ ++K   R G   +++ RLR + +     G  ++TV   P+P+    ++        Q  P G+  R
Sbjct:  335 TMW--EMLASAFQSAYAQGHIERERVIQTLRVWTVEQYITGYDHTWGVAGYILKILKITDEELNRAALSTMA------------EAHKILEQRPSTDGSGSIDLRSL--------------PTFRVLDDGETPLLLMR-FKGQRLTTVVNAAFESSFFTSAEIEAQRKAASMILEFVLAKAVAVEDRLAFFETLARSVFGGES---NVSQLLKFQKRNGRSVVSLFRLRGVYVEEIRAGVGVITVAALPSPLKYPFIEEESPRQLSQRPPHGKEAR 578          
BLAST of EWM27081.1 vs. NCBI_GenBank
Match: gi|585110393|gb|EWM28051.1| (fungal specific transcription [Nannochloropsis gaditana])

HSP 1 Score: 70.4774 bits (171), Expect = 1.840e-9
Identity = 56/232 (24.14%), Postives = 100/232 (43.10%), Query Frame = 0
Query:  114 TFSNLLKSGAVHRMKTFAVLRVWMLFSMYYGVDLTRGFLSVALALMDASIQDLQRLPETMASSVALPPDQPAAEAASITSSTSSSSSSSSTPVSSVDAAASAP----LDPGVLQPFIASLDDG-VSAVICCVGCRGGTGKVYCNDKFKSTFFSSEDLTQRTLSESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDRQGSDFLAIVRLRCLTLNNGDY 340
            T   ++ +G +  +KT A+LR W  ++  +G+D++ G  +  + ++                  AL   + AA  +    S+ S  +++  PV   D   +      LD   +  +++SL DG  SAV   V C  G  +++   +F   F ++  +         LP +++   +AP DR  F  SL     G      ++T    V++  G  F A+VR R + LN G Y
Sbjct:  612 TVLRMIDTGRLQHLKTLAILRTWDFYNHKHGIDISCGASAAIVRVL------------------AL--RKSAAYTSGSGESSESVGTNAEQPVEWNDDLLAMDRQDALDQAHMPSYVSSLQDGGDSAVGGYVYC-SGQYRLWTGKRFADRFMTASTVNSLFDQTKILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQY 822          
BLAST of EWM27081.1 vs. NCBI_GenBank
Match: gi|553192735|ref|XP_005855635.1| (hypothetical protein NGA_0674310 [Nannochloropsis gaditana CCMP526] >gi|422293424|gb|EKU20724.1| hypothetical protein NGA_0674310 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 67.3958 bits (163), Expect = 1.680e-8
Identity = 85/380 (22.37%), Postives = 142/380 (37.37%), Query Frame = 0
Query:   25 RRTCTACKASK----VKCDRQAPVCGR----CARLRLTCVQQPRAQGRPMKSKS-----------------------------SESEGIISPEGMIEST----------LATREAT------PARAVSSETSTQWAADYMAFTFSNLLKSGAVHRMKTFAVLRVWMLFSMYYGVDLTRGFLSV---ALALMDASIQDLQRLPETMASSVALPPDQPAAEAASITSSTSSSSSSSSTPVSSVDAAASAPLDPGVLQPFIASLDDGVSAVICCVGCRGGTGKVYCNDKFKSTFFSSEDLTQRTLSESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDRQGSDFLAIVRLRCLTLNNGDYGADILTVE 348
            + TCTAC+++K    +   R+  +       C +L + C++Q R QGRP K+++                               SE   S    IE++          LAT  A       P R   +E      A  ++  F++L   G     KT AVLR W L S  +  D + G  +    ALAL   +   +Q+ P        +PP  P                    P+S V +  S P D  +L       + G    +      GG  ++  N  F+S   S  D          LP++++ C+  P  + +    L+   F   + + +VT  ++ L R+G  F     +R +  + G Y + I+++E
Sbjct:    8 KNTCTACRSAKELNLIWASRRMFLSVERVVLCTKLGIACIEQVRTQGRPRKTQALTLLNEIYESSNPHNGAPNPPCPSSLHACGSSESGSSATQSIENSSTDGKTPGFLLATDAAVNPVGAAPGRLRLAEYPVSTLATDLSHGFASLHYRGQSDTEKTIAVLRAWNLMSGTHRQDSSYGAFNQVVRALALDHVTAILVQQRPPNCRD---MPPGTPLY-----------------GPMSEV-SDDSDPSD--LLHEGFRGFESGEGKAVAYYVMEGGHVRLSVNPLFESMLMSMTDALSLLEHHRMLPIFLWGCLFTPFSQRKLYGRLSQAIFSAASPVGEVTMDLECLGRKGEPFWGRTSVRHVVEDEGAYASCIISIE 364          
BLAST of EWM27081.1 vs. NCBI_GenBank
Match: gi|585108786|gb|EWM26698.1| (Zn(2)-C6 fungal-type DNA-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 62.7734 bits (151), Expect = 5.746e-7
Identity = 65/252 (25.79%), Postives = 105/252 (41.67%), Query Frame = 0
Query:  114 TFSNLLKSGAVHRMKTFAVLRVWMLFSMYYGVDLTRGFLSVALALMDASIQDLQRLPETMASSVALPPDQPAAEAASITSSTSSSSSSSSTPVSSVDAAASAPLDPGVLQPFIASLDDGVSAVICCVGCRGGTGKVYCNDKFKSTFFSSE-------DLTQRTLSESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDRQGSDFLAIVRLRCLTLNNGDYGADILTVEPAP-MSKYVL 357
            +F  L     + R K+ AV+R W L    Y   L    L   L+++                S AL  D   A     T   ++ +++ ST   +V A      +P  L PF+ +L    SA    V C+G T ++  N  F   F            + +R     T P+ +   +++ ED+ EF  S+  + F       ++ HI +VL RQ    LA+VR+R    + G Y A +L+ +  P  S+Y+L
Sbjct:  432 SFLKLHAQSRICRGKSLAVMRSWAL---AYSKGLGAAALGDRLSVL----------------SAALGIDWKTALTDPATVEEAARATTGSTAPEAVVA-----FEPAHLDPFLRALYTDASAAAALVACQGHT-QLLGNALFSRDFIDPASCNAAWVQVRERQQEAGTDPMDILGGLLSREDQGEFFHSVGAMLFSNPRPCAEMAHIARVLTRQRESILALVRVRFHLADGGGYSAFVLSFQRLPCSSRYML 658          
The following BLAST results are available for this feature:
BLAST of EWM27081.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585109256|gb|EWM27081.1|0.000e+0100.00Zn(2)-C6 fungal-type DNA-binding domain protein [N... [more]
gi|585106530|gb|EWM24903.1|2.218e-2440.97hypothetical protein Naga_100116g15 [Nannochlorops... [more]
gi|585100240|gb|EWM20546.1|4.906e-1123.91hypothetical protein Naga_100685g1 [Nannochloropsi... [more]
gi|585110393|gb|EWM28051.1|1.840e-924.14fungal specific transcription [Nannochloropsis gad... [more]
gi|553192735|ref|XP_005855635.1|1.680e-822.37hypothetical protein NGA_0674310 [Nannochloropsis ... [more]
gi|585108786|gb|EWM26698.1|5.746e-725.79Zn(2)-C6 fungal-type DNA-binding protein [Nannochl... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3609rna3609Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications