EWM27081.1, cds3600 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27081.1 vs. NCBI_GenBank
Match: gi|585109256|gb|EWM27081.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana]) HSP 1 Score: 771.155 bits (1990), Expect = 0.000e+0 Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 0
Query: 1 MVVPLDRMQATDLKAAGAPAPAQPRRTCTACKASKVKCDRQAPVCGRCARLRLTCVQQPRAQGRPMKSKSSESEGIISPEGMIESTLATREATPARAVSSETSTQWAADYMAFTFSNLLKSGAVHRMKTFAVLRVWMLFSMYYGVDLTRGFLSVALALMDASIQDLQRLPETMASSVALPPDQPAAEAASITSSTSSSSSSSSTPVSSVDAAASAPLDPGVLQPFIASLDDGVSAVICCVGCRGGTGKVYCNDKFKSTFFSSEDLTQRTLSESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDRQGSDFLAIVRLRCLTLNNGDYGADILTVEPAPMSKYVLQTSDGAGTGQEGPGGEGGREG 378
MVVPLDRMQATDLKAAGAPAPAQPRRTCTACKASKVKCDRQAPVCGRCARLRLTCVQQPRAQGRPMKSKSSESEGIISPEGMIESTLATREATPARAVSSETSTQWAADYMAFTFSNLLKSGAVHRMKTFAVLRVWMLFSMYYGVDLTRGFLSVALALMDASIQDLQRLPETMASSVALPPDQPAAEAASITSSTSSSSSSSSTPVSSVDAAASAPLDPGVLQPFIASLDDGVSAVICCVGCRGGTGKVYCNDKFKSTFFSSEDLTQRTLSESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDRQGSDFLAIVRLRCLTLNNGDYGADILTVEPAPMSKYVLQTSDGAGTGQEGPGGEGGREG
Sbjct: 1 MVVPLDRMQATDLKAAGAPAPAQPRRTCTACKASKVKCDRQAPVCGRCARLRLTCVQQPRAQGRPMKSKSSESEGIISPEGMIESTLATREATPARAVSSETSTQWAADYMAFTFSNLLKSGAVHRMKTFAVLRVWMLFSMYYGVDLTRGFLSVALALMDASIQDLQRLPETMASSVALPPDQPAAEAASITSSTSSSSSSSSTPVSSVDAAASAPLDPGVLQPFIASLDDGVSAVICCVGCRGGTGKVYCNDKFKSTFFSSEDLTQRTLSESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDRQGSDFLAIVRLRCLTLNNGDYGADILTVEPAPMSKYVLQTSDGAGTGQEGPGGEGGREG 378
BLAST of EWM27081.1 vs. NCBI_GenBank
Match: gi|585106530|gb|EWM24903.1| (hypothetical protein Naga_100116g15 [Nannochloropsis gaditana]) HSP 1 Score: 113.235 bits (282), Expect = 2.218e-24 Identity = 59/144 (40.97%), Postives = 91/144 (63.19%), Query Frame = 0
Query: 226 IASLDDGVSAVICCVGCRGGTGKVYCNDKFKSTFFSSEDLTQRTLSESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDRQGSDFLAIVRLRCLTLNNGDYGADILTVEPAPMSKYVLQTSDGAGTGQEG 369
+++LDD VSAV C V GG +V ND+FK TF+S+ ++ R E P +++A ++A EDR +F++++T FG T + +++ IVKV D FLA++RLR TL G Y A +L++ PAP SKY+ + + G G+EG
Sbjct: 96 LSALDDRVSAVACTVSLVGGACRVLVNDRFKDTFWSASEILSRLSKEVAGPPFLFAALVAVEDRLDFLEAMTAYVFGPPTQV-ELSQIVKVRDAGEQTFLAMIRLRTATLAGGAYLATMLSISPAPSSKYI-RGGNKEGAGEEG 237
BLAST of EWM27081.1 vs. NCBI_GenBank
Match: gi|585100240|gb|EWM20546.1| (hypothetical protein Naga_100685g1 [Nannochloropsis gaditana]) HSP 1 Score: 75.485 bits (184), Expect = 4.906e-11 Identity = 66/276 (23.91%), Postives = 113/276 (40.94%), Query Frame = 0
Query: 104 TQWAADYMAFTFSNLLKSGAVHRMKTFAVLRVWMLFSMYYGVDLTRGFLSVALALMDASIQDLQRLP-ETMASSVALPPDQPAAEAASITSSTSSSSSSSSTPVSSVDAAASAPLDPGVLQPFIASLDDGVSAVICCVGCRGGTGKVYCNDKFKSTFFSSEDLTQRTLSESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDRQGSDFLAIVRLRCLTLNNGDYGADILTVE--PAPMSKYVLQTSDGAGTGQEGPGGEGGR 376
T W + +A F + G + R + LRVW + G D T G L ++ + ++L R TMA EA I S+ S S + S+ P LDDG + ++ +G N F+S+FF+S ++ + + S + +V A +A EDR F ++L FG ++ V+ ++K R G +++ RLR + + G ++TV P+P+ ++ Q P G+ R
Sbjct: 335 TMW--EMLASAFQSAYAQGHIERERVIQTLRVWTVEQYITGYDHTWGVAGYILKILKITDEELNRAALSTMA------------EAHKILEQRPSTDGSGSIDLRSL--------------PTFRVLDDGETPLLLMR-FKGQRLTTVVNAAFESSFFTSAEIEAQRKAASMILEFVLAKAVAVEDRLAFFETLARSVFGGES---NVSQLLKFQKRNGRSVVSLFRLRGVYVEEIRAGVGVITVAALPSPLKYPFIEEESPRQLSQRPPHGKEAR 578
BLAST of EWM27081.1 vs. NCBI_GenBank
Match: gi|585110393|gb|EWM28051.1| (fungal specific transcription [Nannochloropsis gaditana]) HSP 1 Score: 70.4774 bits (171), Expect = 1.840e-9 Identity = 56/232 (24.14%), Postives = 100/232 (43.10%), Query Frame = 0
Query: 114 TFSNLLKSGAVHRMKTFAVLRVWMLFSMYYGVDLTRGFLSVALALMDASIQDLQRLPETMASSVALPPDQPAAEAASITSSTSSSSSSSSTPVSSVDAAASAP----LDPGVLQPFIASLDDG-VSAVICCVGCRGGTGKVYCNDKFKSTFFSSEDLTQRTLSESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDRQGSDFLAIVRLRCLTLNNGDY 340
T ++ +G + +KT A+LR W ++ +G+D++ G + + ++ AL + AA + S+ S +++ PV D + LD + +++SL DG SAV V C G +++ +F F ++ + LP +++ +AP DR F SL G ++T V++ G F A+VR R + LN G Y
Sbjct: 612 TVLRMIDTGRLQHLKTLAILRTWDFYNHKHGIDISCGASAAIVRVL------------------AL--RKSAAYTSGSGESSESVGTNAEQPVEWNDDLLAMDRQDALDQAHMPSYVSSLQDGGDSAVGGYVYC-SGQYRLWTGKRFADRFMTASTVNSLFDQTKILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQY 822
BLAST of EWM27081.1 vs. NCBI_GenBank
Match: gi|553192735|ref|XP_005855635.1| (hypothetical protein NGA_0674310 [Nannochloropsis gaditana CCMP526] >gi|422293424|gb|EKU20724.1| hypothetical protein NGA_0674310 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 67.3958 bits (163), Expect = 1.680e-8 Identity = 85/380 (22.37%), Postives = 142/380 (37.37%), Query Frame = 0
Query: 25 RRTCTACKASK----VKCDRQAPVCGR----CARLRLTCVQQPRAQGRPMKSKS-----------------------------SESEGIISPEGMIEST----------LATREAT------PARAVSSETSTQWAADYMAFTFSNLLKSGAVHRMKTFAVLRVWMLFSMYYGVDLTRGFLSV---ALALMDASIQDLQRLPETMASSVALPPDQPAAEAASITSSTSSSSSSSSTPVSSVDAAASAPLDPGVLQPFIASLDDGVSAVICCVGCRGGTGKVYCNDKFKSTFFSSEDLTQRTLSESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDRQGSDFLAIVRLRCLTLNNGDYGADILTVE 348
+ TCTAC+++K + R+ + C +L + C++Q R QGRP K+++ SE S IE++ LAT A P R +E A ++ F++L G KT AVLR W L S + D + G + ALAL + +Q+ P +PP P P+S V + S P D +L + G + GG ++ N F+S S D LP++++ C+ P + + L+ F + + +VT ++ L R+G F +R + + G Y + I+++E
Sbjct: 8 KNTCTACRSAKELNLIWASRRMFLSVERVVLCTKLGIACIEQVRTQGRPRKTQALTLLNEIYESSNPHNGAPNPPCPSSLHACGSSESGSSATQSIENSSTDGKTPGFLLATDAAVNPVGAAPGRLRLAEYPVSTLATDLSHGFASLHYRGQSDTEKTIAVLRAWNLMSGTHRQDSSYGAFNQVVRALALDHVTAILVQQRPPNCRD---MPPGTPLY-----------------GPMSEV-SDDSDPSD--LLHEGFRGFESGEGKAVAYYVMEGGHVRLSVNPLFESMLMSMTDALSLLEHHRMLPIFLWGCLFTPFSQRKLYGRLSQAIFSAASPVGEVTMDLECLGRKGEPFWGRTSVRHVVEDEGAYASCIISIE 364
BLAST of EWM27081.1 vs. NCBI_GenBank
Match: gi|585108786|gb|EWM26698.1| (Zn(2)-C6 fungal-type DNA-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 62.7734 bits (151), Expect = 5.746e-7 Identity = 65/252 (25.79%), Postives = 105/252 (41.67%), Query Frame = 0
Query: 114 TFSNLLKSGAVHRMKTFAVLRVWMLFSMYYGVDLTRGFLSVALALMDASIQDLQRLPETMASSVALPPDQPAAEAASITSSTSSSSSSSSTPVSSVDAAASAPLDPGVLQPFIASLDDGVSAVICCVGCRGGTGKVYCNDKFKSTFFSSE-------DLTQRTLSESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDRQGSDFLAIVRLRCLTLNNGDYGADILTVEPAP-MSKYVL 357
+F L + R K+ AV+R W L Y L L L+++ S AL D A T ++ +++ ST +V A +P L PF+ +L SA V C+G T ++ N F F + +R T P+ + +++ ED+ EF S+ + F ++ HI +VL RQ LA+VR+R + G Y A +L+ + P S+Y+L
Sbjct: 432 SFLKLHAQSRICRGKSLAVMRSWAL---AYSKGLGAAALGDRLSVL----------------SAALGIDWKTALTDPATVEEAARATTGSTAPEAVVA-----FEPAHLDPFLRALYTDASAAAALVACQGHT-QLLGNALFSRDFIDPASCNAAWVQVRERQQEAGTDPMDILGGLLSREDQGEFFHSVGAMLFSNPRPCAEMAHIARVLTRQRESILALVRVRFHLADGGGYSAFVLSFQRLPCSSRYML 658 The following BLAST results are available for this feature:
BLAST of EWM27081.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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