EWM27108.1, cds3582 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27108.1 vs. NCBI_GenBank
Match: gi|585109285|gb|EWM27108.1| (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 [Nannochloropsis gaditana]) HSP 1 Score: 285.034 bits (728), Expect = 1.960e-97 Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0
Query: 1 MAVVPPINSVYSPSCDARLAEGCIRGLYVGALWGAFFHRYDTVPLPTKASRGQIMLRIFRTRAVGACKHSFLLATFLGLYSGSSCVAEKTMGRRNWATSFVGGLSAGAFAGLTTGHPHHAMTWGVGTGLASMIVYGLQGG 140
MAVVPPINSVYSPSCDARLAEGCIRGLYVGALWGAFFHRYDTVPLPTKASRGQIMLRIFRTRAVGACKHSFLLATFLGLYSGSSCVAEKTMGRRNWATSFVGGLSAGAFAGLTTGHPHHAMTWGVGTGLASMIVYGLQGG
Sbjct: 1 MAVVPPINSVYSPSCDARLAEGCIRGLYVGALWGAFFHRYDTVPLPTKASRGQIMLRIFRTRAVGACKHSFLLATFLGLYSGSSCVAEKTMGRRNWATSFVGGLSAGAFAGLTTGHPHHAMTWGVGTGLASMIVYGLQGG 140
BLAST of EWM27108.1 vs. NCBI_GenBank
Match: gi|813120795|ref|XP_012196432.1| (hypothetical protein SPRG_02466, partial [Saprolegnia parasitica CBS 223.65] >gi|641538947|gb|KDO32768.1| hypothetical protein SPRG_02466, partial [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 60.8474 bits (146), Expect = 4.136e-9 Identity = 36/96 (37.50%), Postives = 52/96 (54.17%), Query Frame = 0
Query: 12 SPSCDARLAEGCIRGLYVGALWGAFFHRYDTVPLPTKASRGQIMLRIFRTRAVGACKHSFLLATFLGLYSGSSCVAEKTMGRRNWATSFVGGLSAG 107
+ +CDARLA RG+ GALW Y+ + + RG + L + ++ A A ++ A FLG + G SC AE G R+W +F+GG SAG
Sbjct: 5 TATCDARLAHLVYRGVMTGALWTISIDGYEHL---AQVQRGAVPLDL-KSLARAAGRNGGAFAIFLGTFGGVSCAAESLRGVRDWKNTFLGGFSAG 96
BLAST of EWM27108.1 vs. NCBI_GenBank
Match: gi|669156858|ref|XP_008613991.1| (hypothetical protein SDRG_09816 [Saprolegnia diclina VS20] >gi|530734248|gb|EQC32490.1| hypothetical protein SDRG_09816 [Saprolegnia diclina VS20]) HSP 1 Score: 60.8474 bits (146), Expect = 4.180e-9 Identity = 36/96 (37.50%), Postives = 52/96 (54.17%), Query Frame = 0
Query: 12 SPSCDARLAEGCIRGLYVGALWGAFFHRYDTVPLPTKASRGQIMLRIFRTRAVGACKHSFLLATFLGLYSGSSCVAEKTMGRRNWATSFVGGLSAG 107
+ +CDARLA RG+ GALW Y+ + + RG + L + ++ A A ++ A FLG + G SC AE G R+W +F+GG SAG
Sbjct: 5 TATCDARLAHLVYRGVMTGALWTISIDGYEHL---AQVQRGAVPLDL-KSLARAAGRNGGAFAIFLGTFGGVSCAAESLRGVRDWKNTFLGGFSAG 96
BLAST of EWM27108.1 vs. NCBI_GenBank
Match: gi|1173951045|gb|OQR98958.1| (hypothetical protein ACHHYP_07448 [Achlya hypogyna]) HSP 1 Score: 58.5362 bits (140), Expect = 3.132e-8 Identity = 36/96 (37.50%), Postives = 48/96 (50.00%), Query Frame = 0
Query: 12 SPSCDARLAEGCIRGLYVGALWGAFFHRYDTVPLPTKASRGQIMLRIFRTRAVGACKHSFLLATFLGLYSGSSCVAEKTMGRRNWATSFVGGLSAG 107
S +CDARLA RG+ G LW Y+ + K G L + + A A ++ A FLG + G SC AE G R+W +F+GG SAG
Sbjct: 5 SATCDARLAHLVYRGVMTGVLWTVSIDGYEHLA---KVESGATPLNL-KALARSAGRNGGAFAIFLGTFGGVSCAAESLRGHRDWKNTFLGGFSAG 96
BLAST of EWM27108.1 vs. NCBI_GenBank
Match: gi|1173939310|gb|OQR89139.1| (hypothetical protein THRCLA_22736 [Thraustotheca clavata]) HSP 1 Score: 57.3806 bits (137), Expect = 7.300e-8 Identity = 34/96 (35.42%), Postives = 49/96 (51.04%), Query Frame = 0
Query: 12 SPSCDARLAEGCIRGLYVGALWGAFFHRYDTVPLPTKASRGQIMLRIFRTRAVGACKHSFLLATFLGLYSGSSCVAEKTMGRRNWATSFVGGLSAG 107
+ +CDARLA RG+ G LW Y+ + K + + ++ RT A ++ A FLG + G SC AE G R+W +F+GG SAG
Sbjct: 5 TATCDARLAHLVYRGVMTGVLWTISVDGYEHLVQVEKGAATLNLKQLART----AGRNGGAFALFLGTFGGVSCAAENLRGTRDWKNTFLGGFSAG 96 The following BLAST results are available for this feature:
BLAST of EWM27108.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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