EWM27108.1, cds3582 (CDS) Nannochloropsis gaditana

Overview
NameEWM27108.1
Unique Namecds3582
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:765709..765772 -
Alignment locationCM002461.1:765513..765638 -
Alignment locationCM002461.1:765179..765411 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27108.1
ProductMitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24
Orig transcript idgnl|cribi|Naga_100046g38.5147.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:765709..765772 -
CM002461.1supercontigCM002461.1:765513..765638 -
CM002461.1supercontigCM002461.1:765179..765411 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR003397Tim17/Tim22/Tim23/PMP24
Homology
BLAST of EWM27108.1 vs. NCBI_GenBank
Match: gi|585109285|gb|EWM27108.1| (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 [Nannochloropsis gaditana])

HSP 1 Score: 285.034 bits (728), Expect = 1.960e-97
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0
Query:    1 MAVVPPINSVYSPSCDARLAEGCIRGLYVGALWGAFFHRYDTVPLPTKASRGQIMLRIFRTRAVGACKHSFLLATFLGLYSGSSCVAEKTMGRRNWATSFVGGLSAGAFAGLTTGHPHHAMTWGVGTGLASMIVYGLQGG 140
            MAVVPPINSVYSPSCDARLAEGCIRGLYVGALWGAFFHRYDTVPLPTKASRGQIMLRIFRTRAVGACKHSFLLATFLGLYSGSSCVAEKTMGRRNWATSFVGGLSAGAFAGLTTGHPHHAMTWGVGTGLASMIVYGLQGG
Sbjct:    1 MAVVPPINSVYSPSCDARLAEGCIRGLYVGALWGAFFHRYDTVPLPTKASRGQIMLRIFRTRAVGACKHSFLLATFLGLYSGSSCVAEKTMGRRNWATSFVGGLSAGAFAGLTTGHPHHAMTWGVGTGLASMIVYGLQGG 140          
BLAST of EWM27108.1 vs. NCBI_GenBank
Match: gi|813120795|ref|XP_012196432.1| (hypothetical protein SPRG_02466, partial [Saprolegnia parasitica CBS 223.65] >gi|641538947|gb|KDO32768.1| hypothetical protein SPRG_02466, partial [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 60.8474 bits (146), Expect = 4.136e-9
Identity = 36/96 (37.50%), Postives = 52/96 (54.17%), Query Frame = 0
Query:   12 SPSCDARLAEGCIRGLYVGALWGAFFHRYDTVPLPTKASRGQIMLRIFRTRAVGACKHSFLLATFLGLYSGSSCVAEKTMGRRNWATSFVGGLSAG 107
            + +CDARLA    RG+  GALW      Y+ +    +  RG + L + ++ A  A ++    A FLG + G SC AE   G R+W  +F+GG SAG
Sbjct:    5 TATCDARLAHLVYRGVMTGALWTISIDGYEHL---AQVQRGAVPLDL-KSLARAAGRNGGAFAIFLGTFGGVSCAAESLRGVRDWKNTFLGGFSAG 96          
BLAST of EWM27108.1 vs. NCBI_GenBank
Match: gi|669156858|ref|XP_008613991.1| (hypothetical protein SDRG_09816 [Saprolegnia diclina VS20] >gi|530734248|gb|EQC32490.1| hypothetical protein SDRG_09816 [Saprolegnia diclina VS20])

HSP 1 Score: 60.8474 bits (146), Expect = 4.180e-9
Identity = 36/96 (37.50%), Postives = 52/96 (54.17%), Query Frame = 0
Query:   12 SPSCDARLAEGCIRGLYVGALWGAFFHRYDTVPLPTKASRGQIMLRIFRTRAVGACKHSFLLATFLGLYSGSSCVAEKTMGRRNWATSFVGGLSAG 107
            + +CDARLA    RG+  GALW      Y+ +    +  RG + L + ++ A  A ++    A FLG + G SC AE   G R+W  +F+GG SAG
Sbjct:    5 TATCDARLAHLVYRGVMTGALWTISIDGYEHL---AQVQRGAVPLDL-KSLARAAGRNGGAFAIFLGTFGGVSCAAESLRGVRDWKNTFLGGFSAG 96          
BLAST of EWM27108.1 vs. NCBI_GenBank
Match: gi|1173951045|gb|OQR98958.1| (hypothetical protein ACHHYP_07448 [Achlya hypogyna])

HSP 1 Score: 58.5362 bits (140), Expect = 3.132e-8
Identity = 36/96 (37.50%), Postives = 48/96 (50.00%), Query Frame = 0
Query:   12 SPSCDARLAEGCIRGLYVGALWGAFFHRYDTVPLPTKASRGQIMLRIFRTRAVGACKHSFLLATFLGLYSGSSCVAEKTMGRRNWATSFVGGLSAG 107
            S +CDARLA    RG+  G LW      Y+ +    K   G   L + +  A  A ++    A FLG + G SC AE   G R+W  +F+GG SAG
Sbjct:    5 SATCDARLAHLVYRGVMTGVLWTVSIDGYEHLA---KVESGATPLNL-KALARSAGRNGGAFAIFLGTFGGVSCAAESLRGHRDWKNTFLGGFSAG 96          
BLAST of EWM27108.1 vs. NCBI_GenBank
Match: gi|1173939310|gb|OQR89139.1| (hypothetical protein THRCLA_22736 [Thraustotheca clavata])

HSP 1 Score: 57.3806 bits (137), Expect = 7.300e-8
Identity = 34/96 (35.42%), Postives = 49/96 (51.04%), Query Frame = 0
Query:   12 SPSCDARLAEGCIRGLYVGALWGAFFHRYDTVPLPTKASRGQIMLRIFRTRAVGACKHSFLLATFLGLYSGSSCVAEKTMGRRNWATSFVGGLSAG 107
            + +CDARLA    RG+  G LW      Y+ +    K +    + ++ RT    A ++    A FLG + G SC AE   G R+W  +F+GG SAG
Sbjct:    5 TATCDARLAHLVYRGVMTGVLWTISVDGYEHLVQVEKGAATLNLKQLART----AGRNGGAFALFLGTFGGVSCAAENLRGTRDWKNTFLGGFSAG 96          
The following BLAST results are available for this feature:
BLAST of EWM27108.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585109285|gb|EWM27108.1|1.960e-97100.00Mitochondrial inner membrane translocase subunit T... [more]
gi|813120795|ref|XP_012196432.1|4.136e-937.50hypothetical protein SPRG_02466, partial [Saproleg... [more]
gi|669156858|ref|XP_008613991.1|4.180e-937.50hypothetical protein SDRG_09816 [Saprolegnia dicli... [more]
gi|1173951045|gb|OQR98958.1|3.132e-837.50hypothetical protein ACHHYP_07448 [Achlya hypogyna... [more]
gi|1173939310|gb|OQR89139.1|7.300e-835.42hypothetical protein THRCLA_22736 [Thraustotheca c... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3591rna3591Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications