EWM27102.1, cds3575 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27102.1 vs. NCBI_GenBank
Match: gi|585109279|gb|EWM27102.1| (LETM1-like protein [Nannochloropsis gaditana]) HSP 1 Score: 805.823 bits (2080), Expect = 0.000e+0 Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 0 Query: 1 MKTPSFLFLAFVLLIAHVAASRLQGSTFTSIQTLTQFHDSSRQFILDGRQLAIPLPAHVLPPLAIVGGLVQGIGNSLRRLQEGTIDLWGNTKQLGGLKKRFARGETLTFPEYNLMQKTSGDIAKFVGLALFTMSKPEFTPFLCSFFPAVVPSTYLNSDEKLQRCQQRNFARVRGVVTHLMSLQQEAVAPHRKENDRMRHLRTMERLLHTTTKAGPGKALKQVGDLEYVLFCRPKRDGKGRQKADLRAVPRPFLVSVCNAIGMFHKFIPAAGLRTMLSDYLWKIDESDQVLLNTNVDKLGRDDLLDACAQRALSLGDASPDAMRANLKSYLKCVSRPSLAPPVVRKKESEQEGKVVALNENNMRFALLGLNMVGLVRDAKENSALRALFGCT 391 MKTPSFLFLAFVLLIAHVAASRLQGSTFTSIQTLTQFHDSSRQFILDGRQLAIPLPAHVLPPLAIVGGLVQGIGNSLRRLQEGTIDLWGNTKQLGGLKKRFARGETLTFPEYNLMQKTSGDIAKFVGLALFTMSKPEFTPFLCSFFPAVVPSTYLNSDEKLQRCQQRNFARVRGVVTHLMSLQQEAVAPHRKENDRMRHLRTMERLLHTTTKAGPGKALKQVGDLEYVLFCRPKRDGKGRQKADLRAVPRPFLVSVCNAIGMFHKFIPAAGLRTMLSDYLWKIDESDQVLLNTNVDKLGRDDLLDACAQRALSLGDASPDAMRANLKSYLKCVSRPSLAPPVVRKKESEQEGKVVALNENNMRFALLGLNMVGLVRDAKENSALRALFGCT Sbjct: 1 MKTPSFLFLAFVLLIAHVAASRLQGSTFTSIQTLTQFHDSSRQFILDGRQLAIPLPAHVLPPLAIVGGLVQGIGNSLRRLQEGTIDLWGNTKQLGGLKKRFARGETLTFPEYNLMQKTSGDIAKFVGLALFTMSKPEFTPFLCSFFPAVVPSTYLNSDEKLQRCQQRNFARVRGVVTHLMSLQQEAVAPHRKENDRMRHLRTMERLLHTTTKAGPGKALKQVGDLEYVLFCRPKRDGKGRQKADLRAVPRPFLVSVCNAIGMFHKFIPAAGLRTMLSDYLWKIDESDQVLLNTNVDKLGRDDLLDACAQRALSLGDASPDAMRANLKSYLKCVSRPSLAPPVVRKKESEQEGKVVALNENNMRFALLGLNMVGLVRDAKENSALRALFGCT 391
BLAST of EWM27102.1 vs. NCBI_GenBank
Match: gi|553191363|ref|XP_005855367.1| (hypothetical protein NGA_2009600, partial [Nannochloropsis gaditana CCMP526] >gi|422293693|gb|EKU20993.1| hypothetical protein NGA_2009600, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 805.053 bits (2078), Expect = 0.000e+0 Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 0 Query: 1 MKTPSFLFLAFVLLIAHVAASRLQGSTFTSIQTLTQFHDSSRQFILDGRQLAIPLPAHVLPPLAIVGGLVQGIGNSLRRLQEGTIDLWGNTKQLGGLKKRFARGETLTFPEYNLMQKTSGDIAKFVGLALFTMSKPEFTPFLCSFFPAVVPSTYLNSDEKLQRCQQRNFARVRGVVTHLMSLQQEAVAPHRKENDRMRHLRTMERLLHTTTKAGPGKALKQVGDLEYVLFCRPKRDGKGRQKADLRAVPRPFLVSVCNAIGMFHKFIPAAGLRTMLSDYLWKIDESDQVLLNTNVDKLGRDDLLDACAQRALSLGDASPDAMRANLKSYLKCVSRPSLAPPVVRKKESEQEGKVVALNENNMRFALLGLNMVGLVRDAKENSALRALFGCT 391 MKTPSFLFLAFVLLIAHVAASRLQGSTFTSIQTLTQFHDSSRQFILDGRQLAIPLPAHVLPPLAIVGGLVQGIGNSLRRLQEGTIDLWGNTKQLGGLKKRFARGETLTFPEYNLMQKTSGDIAKFVGLALFTMSKPEFTPFLCSFFPAVVPSTYLNSDEKLQRCQQRNFARVRGVVTHLMSLQQEAVAPHRKENDRMRHLRTMERLLHTTTKAGPGKALKQVGDLEYVLFCRPKRDGKGRQKADLRAVPRPFLVSVCNAIGMFHKFIPAAGLRTMLSDYLWKIDESDQVLLNTNVDKLGRDDLLDACAQRALSLGDASPDAMRANLKSYLKCVSRPSLAPPVVRKKESEQEGKVVALNENNMRFALLGLNMVGLVRDAKENSALRALFGCT Sbjct: 4 MKTPSFLFLAFVLLIAHVAASRLQGSTFTSIQTLTQFHDSSRQFILDGRQLAIPLPAHVLPPLAIVGGLVQGIGNSLRRLQEGTIDLWGNTKQLGGLKKRFARGETLTFPEYNLMQKTSGDIAKFVGLALFTMSKPEFTPFLCSFFPAVVPSTYLNSDEKLQRCQQRNFARVRGVVTHLMSLQQEAVAPHRKENDRMRHLRTMERLLHTTTKAGPGKALKQVGDLEYVLFCRPKRDGKGRQKADLRAVPRPFLVSVCNAIGMFHKFIPAAGLRTMLSDYLWKIDESDQVLLNTNVDKLGRDDLLDACAQRALSLGDASPDAMRANLKSYLKCVSRPSLAPPVVRKKESEQEGKVVALNENNMRFALLGLNMVGLVRDAKENSALRALFGCT 394
BLAST of EWM27102.1 vs. NCBI_GenBank
Match: gi|922858215|gb|KOO26378.1| (hypothetical protein Ctob_002393 [Chrysochromulina sp. CCMP291]) HSP 1 Score: 75.485 bits (184), Expect = 2.235e-11 Identity = 75/293 (25.60%), Postives = 124/293 (42.32%), Query Frame = 0 Query: 73 IGNSLRRLQEGTIDLWGNTKQLGGLKKRFARG-ETLTFPEYNLMQKTSGDIAKFVGLALFTMSKPEFTPFLCSFFPAVVPSTYLNSDEKLQRCQQRNFARVR-GVVTHLMSL--QQEAVAPHRKENDRMRHLRTMERLLHTTTKAGP-----GKALKQVGDLEYVLFC-----------RPKRDGK----------GRQKADLRAVPRPFLVSVCNAIGMFHKFIPAAGL--RTMLSDYLWKIDESDQVLLNTNVDKLGRDDLLDACAQRALSLGDASPDAMRANLKSYLKCV 333 I ++++R Q GT +W N K G +++R RG E L++ E L++++ D K + + PE P L F+P +PST+ ++ +R + AR+R L+S +Q+A RK E LL + + G+AL + + RP++DGK G KA L + +P L + C IG+ P G+ R L +L + D +L LGR++L++AC R + +R L +L V Sbjct: 41 IRDNVKRFQVGTKQMWLNGKAAGVVRRRVERGGEALSYAELQLLRRSGEDTFKLLRAGAMWLVAPELFPVLLYFYPRALPSTFETETDRERR--RGTLARMRTAAALELLSTLEEQKATNTGRKALAAAEQCEAAELLLRAKSSSHALAFVQGRALALAPEAKIYQHYNRIAEREAQKRRPRKDGKVPEVSVGQSSGLGKAALMGLSQPVLKAGCKLIGVSG---PQPGMFRRGALGAHLEGLVLEDSILAAQGTSALGREELVEACLDRGFGSTALNDAQLRRLLDEWLHLV 328
BLAST of EWM27102.1 vs. NCBI_GenBank
Match: gi|1025398266|ref|XP_016450802.1| (PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like, partial [Nicotiana tabacum]) HSP 1 Score: 72.4034 bits (176), Expect = 3.307e-10 Identity = 74/253 (29.25%), Postives = 120/253 (47.43%), Query Frame = 0 Query: 83 GTIDLWGNTKQLGGLKKRFARGETLTFPEYNLMQKTSGDIAKFVGLALFTMSK-PEFT-PFLCSFFPAVVPSTYLNSDEKLQRCQQRNFARVRGVVTHLMSLQQEAVAPHRKE--NDRMRHLR-TMERLLHTTTKAGPGKALKQVGDLEYVLFCRPKRDGKGRQKADLRAVPRPFLVSVCNAIGMFHKFIPAAGLRTMLSDYLWKIDESDQVLLNTNVDKLGRDDLLDACAQRALSLGDASPDAMRANLKSYL 330 GT LW + + L + A G++L+ E + +T+ DI + V +A+F + EF P + FP ++PST+ + ++ + +++ AR+ QE V KE N R L+ T E L K G + V + E + F + D + L + RP LV++C +G+ + F A LR ML L KI D+++ V+ L D+L AC +R L LG S + MR L+ +L Sbjct: 222 GTKLLWADVRICSRLLLKTANGKSLSRRERQQLTRTTADIFRLVPVAVFIIVPFMEFLLPVFLAVFPNMLPSTFQDKMKEEEALKRKLNARI-----EYAKFLQETVKEMAKEVKNSRSGELKNTAEDLDEFMNKVRRGAS---VSNEEILGFAKLFND-----ELTLDNISRPRLVNMCKYMGI-NPFGTDAYLRFMLRKRLQKIKNDDKMIKAEGVESLSEDELRQACRERGL-LGLLSVEEMRQQLRDWL 459
BLAST of EWM27102.1 vs. NCBI_GenBank
Match: gi|460409315|ref|XP_004250084.1| (PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial [Solanum lycopersicum]) HSP 1 Score: 72.0182 bits (175), Expect = 6.516e-10 Identity = 72/253 (28.46%), Postives = 119/253 (47.04%), Query Frame = 0 Query: 83 GTIDLWGNTKQLGGLKKRFARGETLTFPEYNLMQKTSGDIAKFVGLALFTMS--KPEFTPFLCSFFPAVVPSTYLNSDEKLQRCQQRNFARVRGVVTHLMSLQQEAVAPHRKE--NDRMRHLR-TMERLLHTTTKAGPGKALKQVGDLEYVLFCRPKRDGKGRQKADLRAVPRPFLVSVCNAIGMFHKFIPAAGLRTMLSDYLWKIDESDQVLLNTNVDKLGRDDLLDACAQRALSLGDASPDAMRANLKSYL 330 GT LW + + L + A+G++L+ E + +T+ DI + V +A+F + P + FP ++PST+ + ++ + +++ AR+ QE V KE N R L+ T E L K G + V + E + F + D + L + RP LV++C +G+ + F A LR ML L KI D+++ V+ L D+L AC +R L LG S + MR L+ +L Sbjct: 222 GTKLLWADVRICSRLLLKTAKGKSLSRRERQQLTRTTADIFRLVPVAVFIIVPFMELLLPVFLALFPNMLPSTFQDKMKEEEALKRKLNARI-----EYAKFLQETVKEMAKEVKNSRSGELKNTAEDLDEFMNKVRRGAS---VSNEEILGFAKLFND-----ELTLDNISRPRLVNMCKYMGI-NPFGTDAYLRFMLRKRLQKIKNDDKMIQAEGVESLSEDELRQACRERGL-LGLLSVEEMRQQLRDWL 459
BLAST of EWM27102.1 vs. NCBI_GenBank
Match: gi|970063568|ref|XP_015058720.1| (PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial [Solanum pennellii]) HSP 1 Score: 72.0182 bits (175), Expect = 6.936e-10 Identity = 72/253 (28.46%), Postives = 119/253 (47.04%), Query Frame = 0 Query: 83 GTIDLWGNTKQLGGLKKRFARGETLTFPEYNLMQKTSGDIAKFVGLALFTMS--KPEFTPFLCSFFPAVVPSTYLNSDEKLQRCQQRNFARVRGVVTHLMSLQQEAVAPHRKE--NDRMRHLR-TMERLLHTTTKAGPGKALKQVGDLEYVLFCRPKRDGKGRQKADLRAVPRPFLVSVCNAIGMFHKFIPAAGLRTMLSDYLWKIDESDQVLLNTNVDKLGRDDLLDACAQRALSLGDASPDAMRANLKSYL 330 GT LW + + L + A+G++L+ E + +T+ DI + V +A+F + P + FP ++PST+ + ++ + +++ AR+ QE V KE N R L+ T E L K G + V + E + F + D + L + RP LV++C +G+ + F A LR ML L KI D+++ V+ L D+L AC +R L LG S + MR L+ +L Sbjct: 222 GTKLLWADVRICSRLLLKTAKGKSLSRRERQQLTRTTADIFRLVPVAVFIIVPFMELLLPVFLALFPNMLPSTFQDKMKEEEALKRKLNARI-----EYAKFLQETVKEMAKEVKNSRSGELKNTAEDLDEFMNKVRRGAS---VSNEEILGFAKLFND-----ELTLDNISRPRLVNMCKYMGI-NPFGTDAYLRFMLRKRLQKIKNDDKMIQAEGVESLSEDELRQACRERGL-LGLLSVEEMRQQLRDWL 459
BLAST of EWM27102.1 vs. NCBI_GenBank
Match: gi|1026104135|ref|XP_016551111.1| (PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Capsicum annuum]) HSP 1 Score: 71.633 bits (174), Expect = 7.780e-10 Identity = 72/253 (28.46%), Postives = 119/253 (47.04%), Query Frame = 0 Query: 83 GTIDLWGNTKQLGGLKKRFARGETLTFPEYNLMQKTSGDIAKFVGLALFTMS--KPEFTPFLCSFFPAVVPSTYLNSDEKLQRCQQRNFARVRGVVTHLMSLQQEAVAPHRKE--NDRMRHLR-TMERLLHTTTKAGPGKALKQVGDLEYVLFCRPKRDGKGRQKADLRAVPRPFLVSVCNAIGMFHKFIPAAGLRTMLSDYLWKIDESDQVLLNTNVDKLGRDDLLDACAQRALSLGDASPDAMRANLKSYL 330 GT LW + + L + A+G++L+ E + +T+ DI + V +A+F + P + FP ++PST+ + ++ + +++ AR+ QE V KE N R L+ T E L K G +V + E + F + D + L + RP LV++C +G+ + F A LR ML L KI D+++ V+ L D+L AC +R L LG S + MR L+ +L Sbjct: 221 GTKLLWADVRICSRLLLKTAKGKSLSRRERQQLTRTTADIFRLVPVAVFIIVPFMELLLPVFLTLFPNMLPSTFQDKMKEEEALKRKLNARI-----EYAKFLQETVKEMAKEVKNSRSGELKNTAEDLDEFMNKVRRGA---RVSNEEILGFAKLFND-----ELTLDNISRPRLVNMCKYMGI-NPFGTDAYLRFMLRKRLQKIKNDDKMIQAEGVESLSEDELRQACRERGL-LGLLSVEEMRQQLRDWL 458
BLAST of EWM27102.1 vs. NCBI_GenBank
Match: gi|1111020968|ref|XP_019261501.1| (PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial [Nicotiana attenuata] >gi|1102292353|gb|OIT38449.1| hypothetical protein A4A49_07794 [Nicotiana attenuata]) HSP 1 Score: 71.633 bits (174), Expect = 8.548e-10 Identity = 73/253 (28.85%), Postives = 120/253 (47.43%), Query Frame = 0 Query: 83 GTIDLWGNTKQLGGLKKRFARGETLTFPEYNLMQKTSGDIAKFVGLALFTMSK-PEFT-PFLCSFFPAVVPSTYLNSDEKLQRCQQRNFARVRGVVTHLMSLQQEAVAPHRKE--NDRMRHLR-TMERLLHTTTKAGPGKALKQVGDLEYVLFCRPKRDGKGRQKADLRAVPRPFLVSVCNAIGMFHKFIPAAGLRTMLSDYLWKIDESDQVLLNTNVDKLGRDDLLDACAQRALSLGDASPDAMRANLKSYL 330 GT LW + + L + A G++L+ E + +T+ DI + V +A+F + EF P + FP ++PST+ + ++ + +++ AR+ QE V KE N R L+ T E L K G + V + E + F + D + L + RP LV++C +G+ + F A LR ML L KI D+++ ++ L D+L AC +R L LG S + MR L+ +L Sbjct: 230 GTKLLWADVRICSRLLLKTANGKSLSRRERQQLTRTTADIFRLVPVAVFIIVPFMEFLLPVFLAVFPNMLPSTFQDKMKEEEALKRKLNARI-----EYAKFLQETVKEMAKEVKNSRSGELKNTAEDLDEFMNKVRRGAS---VSNEEILGFAKLFND-----ELTLDNISRPRLVNMCKYMGI-NPFGTDAYLRFMLRKRLQKIKNDDKMIKAEGIESLSEDELRQACRERGL-LGLLSVEEMRQQLRDWL 467
BLAST of EWM27102.1 vs. NCBI_GenBank
Match: gi|84996957|ref|XP_953200.1| (hypothetical protein, conserved [Theileria annulata] >gi|65304196|emb|CAI76575.1| hypothetical protein, conserved [Theileria annulata]) HSP 1 Score: 71.2478 bits (173), Expect = 9.538e-10 Identity = 66/287 (23.00%), Postives = 127/287 (44.25%), Query Frame = 0 Query: 65 IVGGLVQGIGNSLRRLQEGTIDLWGNTKQLGGLKKRFARGETLTFPEYNLMQKTSGDIAKFVGLALFTMSK-PEFT-PFLCSFFPAVVPSTYLNSDEKLQRCQQRNFARVRGVVTHLMSL---------QQEAVAPHRKENDRMRHLRTMERLLHTTTKAGPGKALKQVGDLEYVLFCRPKRDGKGRQKADLRAVPRPFLVSVCNAIGMFHKFIPAAGLRTMLSDYLWKIDESDQVLLNTNVDKLGRDDLLDACAQRALSLGDASPDAMRANLKSYLKCVSRPSLAP 340 I +V GI +++ + G+ N K + K+ RG + + E L+ +T D K V + F + EF P + FFP ++PST+ +++K + Q+ + + T L Q+E + R + + ++ + ERLL + P + E ++F + +++ L + L +C +G+ F + L L +L KI D+++L V+ L ++L +AC +RA+ + + + M+ LK +L SR + P Sbjct: 184 IFKSIVGGIKHTIHWCKTGSKLYAANVKVSYYILKKLIRGHPMRYHERKLLMRTMNDALKLVPFSFFIIVPFAEFLLPVVIRFFPQMLPSTFQTNNKKDEDYLQKKLMAKKELATFFQELVQERTNQILQEELDSSMRTKAEALKQFQ--ERLLKKSDDMNPFLSAN-----ELLVFSKL-----FKKEFVLDKMSYQTLKVMCKLLGI-TPFALKSHLVLQLRHHLLKIQREDRLILWEGVESLQFEELQEACKERAMKFYNVTKEQMQQQLKQWLDLSSRREINP 457
BLAST of EWM27102.1 vs. NCBI_GenBank
Match: gi|947094436|gb|KRH43021.1| (hypothetical protein GLYMA_08G125700 [Glycine max]) HSP 1 Score: 70.8626 bits (172), Expect = 1.324e-9 Identity = 72/273 (26.37%), Postives = 122/273 (44.69%), Query Frame = 0 Query: 69 LVQGIGNSLRRLQE---GTIDLWGNTKQLGGLKKRFARGETLTFPEYNLMQKTSGDIAKFVGLALFTMS--KPEFTPFLCSFFPAVVPSTYLNSDEKLQRCQQRNFARVRGVVTHLMSLQQEAVAPHRKE--NDRMRHLRT----MERLLHTTTKAGPGKALKQVGDLEYVLFCRPKRDGKGRQKADLRAVPRPFLVSVCNAIGMFHKFIPAAGLRTMLSDYLWKIDESDQVLLNTNVDKLGRDDLLDACAQRALSLGDASPDAMRANLKSYL 330 LV G + LQ G+ LW + + L + A G +L+ E + +T+ DI + V A+F + P FP ++PST+ + ++ + ++R AR+ Q+ V KE N R L+ ++ L+T + V + E + F + D + L + RP LV++C +G+ F A LR ML +L +I E D+++ VD L D+L + C +R + LG S + MR L+ +L Sbjct: 184 LVHWKGEFVSTLQHYWLGSKLLWADVRISSRLLLKLAGGRSLSRRERQQLTRTTADIFRLVPFAVFIIVPFMELLLPVFLKLFPNMLPSTFQDKMKEQEALKRRLKARI-----EYARFLQDTVKEMAKEVQNSRSGELKKTAEDLDEFLNTIRRGAT------VSNEEILGFAKLFND-----ELTLDNISRPRLVNMCKYMGI-SPFGTDAYLRYMLRKHLRRIKEDDKLIQAEGVDSLSEDELQEDCRERGM-LGMLSVEEMRQQLRDWL 438 The following BLAST results are available for this feature:
BLAST of EWM27102.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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