EWM27218.1, cds3524 (CDS) Nannochloropsis gaditana

Overview
NameEWM27218.1
Unique Namecds3524
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:618383..618997 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27218.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100010g92.6188.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:618383..618997 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
Homology
BLAST of EWM27218.1 vs. NCBI_GenBank
Match: gi|585109398|gb|EWM27218.1| (hypothetical protein Naga_100010g92 [Nannochloropsis gaditana])

HSP 1 Score: 423.32 bits (1087), Expect = 5.687e-150
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0
Query:    1 MSSVVVSGEQQQTQSTATGDGNNFLGESTASQIIASDTPGTPTGQSLARGSAIDSRIFSTATISNEEELQARADIYQISHRLQNTGDILILVYITLKCLVLLRHARGCGHILACMYRPDYLEYGRPATSEELQEAETFECIVGYENLNNNSVALPGAHYFCEPCLSEWCERERTCPLCRSAIGPNFHLNAPYCNITTPIWPCFL 204
            MSSVVVSGEQQQTQSTATGDGNNFLGESTASQIIASDTPGTPTGQSLARGSAIDSRIFSTATISNEEELQARADIYQISHRLQNTGDILILVYITLKCLVLLRHARGCGHILACMYRPDYLEYGRPATSEELQEAETFECIVGYENLNNNSVALPGAHYFCEPCLSEWCERERTCPLCRSAIGPNFHLNAPYCNITTPIWPCFL
Sbjct:    1 MSSVVVSGEQQQTQSTATGDGNNFLGESTASQIIASDTPGTPTGQSLARGSAIDSRIFSTATISNEEELQARADIYQISHRLQNTGDILILVYITLKCLVLLRHARGCGHILACMYRPDYLEYGRPATSEELQEAETFECIVGYENLNNNSVALPGAHYFCEPCLSEWCERERTCPLCRSAIGPNFHLNAPYCNITTPIWPCFL 204          
BLAST of EWM27218.1 vs. NCBI_GenBank
Match: gi|765554865|gb|KJE95486.1| (zinc finger family protein [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 72.7886 bits (177), Expect = 1.789e-11
Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 0
Query:   76 YQISHRLQNTGDIL----ILVYITLKCLVLLRHARGCGHILACMYRPDYLEYGRPATSEELQEAETFECIVGYENLNNNSVALPGAHYFCEPCLSEWCERERTCPLCRSAI 182
            YQ  H  +  G +L      +Y+  K   ++ HA  C H    + R + ++YGR A  EE+ EA   +C +  E    + VALP  H FCE C+++W ERERTCP+CR+ I
Sbjct:  612 YQYFHDDEFGGHVLSSFVTGLYLAFKVSGVVEHASACWHAWRAILRHE-VQYGRYANKEEVMEAGN-QCPICQEE-TKDPVALPCNHIFCEDCVTQWFERERTCPMCRTTI 719          
BLAST of EWM27218.1 vs. NCBI_GenBank
Match: gi|754349986|ref|XP_004345525.2| (zinc finger family protein [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 72.7886 bits (177), Expect = 1.825e-11
Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 0
Query:   76 YQISHRLQNTGDIL----ILVYITLKCLVLLRHARGCGHILACMYRPDYLEYGRPATSEELQEAETFECIVGYENLNNNSVALPGAHYFCEPCLSEWCERERTCPLCRSAI 182
            YQ  H  +  G +L      +Y+  K   ++ HA  C H    + R + ++YGR A  EE+ EA   +C +  E    + VALP  H FCE C+++W ERERTCP+CR+ I
Sbjct:  506 YQYFHDDEFGGHVLSSFVTGLYLAFKVSGVVEHASACWHAWRAILRHE-VQYGRYANKEEVMEAGN-QCPICQEE-TKDPVALPCNHIFCEDCVTQWFERERTCPMCRTTI 613          
BLAST of EWM27218.1 vs. NCBI_GenBank
Match: gi|970654652|gb|KUF92935.1| (hypothetical protein AM588_10003859 [Phytophthora nicotianae])

HSP 1 Score: 68.9366 bits (167), Expect = 1.985e-11
Identity = 37/101 (36.63%), Postives = 57/101 (56.44%), Query Frame = 0
Query:   83 QNTGDILILVYITLKCLVLLRHARGCGHILACMYRPDYLEYGRPATSEELQEAETFECIVGYENLNNNSVALPGAHYFCEPCLSEWCERERTCPLCRSAIG 183
            +   D+    Y+ +K L+L    R    ILA  +    LE+G   T +EL EA + +C + YE +    V L  +H FCE C++EW + ER+CPLCR+++G
Sbjct:   25 KFMADVFTFAYVFIKGLILATQGRRI-FILARSFVTLGLEFGVYVTHDELVEAGSPDCSICYETMRQ-PVKLACSHMFCEECVTEWFDHERSCPLCRASVG 123          
BLAST of EWM27218.1 vs. NCBI_GenBank
Match: gi|570970494|gb|ETP33613.1| (hypothetical protein F442_17886 [Phytophthora parasitica P10297])

HSP 1 Score: 72.0182 bits (175), Expect = 3.030e-11
Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = 0
Query:   86 GDILILVYITLKCLVLLRHARGCGHILACMYRPDYLEYGRPATSEELQEAETFECIVGYENLNNNSVALPGAHYFCEPCLSEWCERERTCPLCRSAIG 183
             D+    Y+ +K L+L    R    ILA  +    LE+G   T +EL EA + +C + YE +    V L  +H FCE C++EW + ER+CPLCR+++G
Sbjct:  497 ADVFTFAYVFIKGLILATQGRRI-FILARSFVTLGLEFGVYVTHDELVEAGSPDCSICYETMRQ-PVKLACSHMFCEECVTEWFDHERSCPLCRASVG 592          
BLAST of EWM27218.1 vs. NCBI_GenBank
Match: gi|675207537|ref|XP_008912653.1| (hypothetical protein PPTG_16653 [Phytophthora parasitica INRA-310] >gi|568087097|gb|ETN01972.1| hypothetical protein PPTG_16653 [Phytophthora parasitica INRA-310])

HSP 1 Score: 72.0182 bits (175), Expect = 3.059e-11
Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = 0
Query:   86 GDILILVYITLKCLVLLRHARGCGHILACMYRPDYLEYGRPATSEELQEAETFECIVGYENLNNNSVALPGAHYFCEPCLSEWCERERTCPLCRSAIG 183
             D+    Y+ +K L+L    R    ILA  +    LE+G   T +EL EA + +C + YE +    V L  +H FCE C++EW + ER+CPLCR+++G
Sbjct:  497 ADVFTFAYVFIKGLILATQGRRI-FILARSFVTLGLEFGVYVTHDELVEAGSPDCSICYETMRQ-PVKLACSHMFCEECVTEWFDHERSCPLCRASVG 592          
BLAST of EWM27218.1 vs. NCBI_GenBank
Match: gi|567978854|gb|ETL29340.1| (hypothetical protein L916_17454 [Phytophthora parasitica])

HSP 1 Score: 72.0182 bits (175), Expect = 3.088e-11
Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = 0
Query:   86 GDILILVYITLKCLVLLRHARGCGHILACMYRPDYLEYGRPATSEELQEAETFECIVGYENLNNNSVALPGAHYFCEPCLSEWCERERTCPLCRSAIG 183
             D+    Y+ +K L+L    R    ILA  +    LE+G   T +EL EA + +C + YE +    V L  +H FCE C++EW + ER+CPLCR+++G
Sbjct:  497 ADVFTFAYVFIKGLILATQGRRI-FILARSFVTLGLEFGVYVTHDELVEAGSPDCSICYETMRQ-PVKLACSHMFCEECVTEWFDHERSCPLCRASVG 592          
BLAST of EWM27218.1 vs. NCBI_GenBank
Match: gi|970654506|gb|KUF92809.1| (RING finger and transmembrane domain-containing protein 2 [Phytophthora nicotianae])

HSP 1 Score: 72.0182 bits (175), Expect = 3.178e-11
Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = 0
Query:   86 GDILILVYITLKCLVLLRHARGCGHILACMYRPDYLEYGRPATSEELQEAETFECIVGYENLNNNSVALPGAHYFCEPCLSEWCERERTCPLCRSAIG 183
             D+    Y+ +K L+L    R    ILA  +    LE+G   T +EL EA + +C + YE +    V L  +H FCE C++EW + ER+CPLCR+++G
Sbjct:  497 ADVFTFAYVFIKGLILATQGRRI-FILARSFVTLGLEFGVYVTHDELVEAGSPDCSICYETMRQ-PVKLACSHMFCEECVTEWFDHERSCPLCRASVG 592          
BLAST of EWM27218.1 vs. NCBI_GenBank
Match: gi|570316444|gb|ETO64392.1| (hypothetical protein F444_18065 [Phytophthora parasitica P1976])

HSP 1 Score: 72.0182 bits (175), Expect = 3.208e-11
Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = 0
Query:   86 GDILILVYITLKCLVLLRHARGCGHILACMYRPDYLEYGRPATSEELQEAETFECIVGYENLNNNSVALPGAHYFCEPCLSEWCERERTCPLCRSAIG 183
             D+    Y+ +K L+L    R    ILA  +    LE+G   T +EL EA + +C + YE +    V L  +H FCE C++EW + ER+CPLCR+++G
Sbjct:  497 ADVFTFAYVFIKGLILATQGRRI-FILARSFVTLGLEFGVYVTHDELVEAGSPDCSICYETMRQ-PVKLACSHMFCEECVTEWFDHERSCPLCRASVG 592          
BLAST of EWM27218.1 vs. NCBI_GenBank
Match: gi|566012749|gb|ETI35660.1| (hypothetical protein F443_18042 [Phytophthora parasitica P1569] >gi|567950185|gb|ETK75902.1| hypothetical protein L915_17561 [Phytophthora parasitica] >gi|568038264|gb|ETM35801.1| hypothetical protein L914_17355 [Phytophthora parasitica])

HSP 1 Score: 71.633 bits (174), Expect = 3.808e-11
Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = 0
Query:   86 GDILILVYITLKCLVLLRHARGCGHILACMYRPDYLEYGRPATSEELQEAETFECIVGYENLNNNSVALPGAHYFCEPCLSEWCERERTCPLCRSAIG 183
             D+    Y+ +K L+L    R    ILA  +    LE+G   T +EL EA + +C + YE +    V L  +H FCE C++EW + ER+CPLCR+++G
Sbjct:  497 ADVFTFAYVFIKGLILATQGRRI-FILARSFVTLGLEFGVYVTHDELVEAGSPDCSICYETMRQ-PVKLACSHMFCEGCVTEWFDHERSCPLCRASVG 592          
The following BLAST results are available for this feature:
BLAST of EWM27218.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109398|gb|EWM27218.1|5.687e-150100.00hypothetical protein Naga_100010g92 [Nannochlorops... [more]
gi|765554865|gb|KJE95486.1|1.789e-1137.84zinc finger family protein [Capsaspora owczarzaki ... [more]
gi|754349986|ref|XP_004345525.2|1.825e-1137.84zinc finger family protein [Capsaspora owczarzaki ... [more]
gi|970654652|gb|KUF92935.1|1.985e-1136.63hypothetical protein AM588_10003859 [Phytophthora ... [more]
gi|570970494|gb|ETP33613.1|3.030e-1137.76hypothetical protein F442_17886 [Phytophthora para... [more]
gi|675207537|ref|XP_008912653.1|3.059e-1137.76hypothetical protein PPTG_16653 [Phytophthora para... [more]
gi|567978854|gb|ETL29340.1|3.088e-1137.76hypothetical protein L916_17454 [Phytophthora para... [more]
gi|970654506|gb|KUF92809.1|3.178e-1137.76RING finger and transmembrane domain-containing pr... [more]
gi|570316444|gb|ETO64392.1|3.208e-1137.76hypothetical protein F444_18065 [Phytophthora para... [more]
gi|566012749|gb|ETI35660.1|3.808e-1137.76hypothetical protein F443_18042 [Phytophthora para... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3533rna3533Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications